Wall clock time and date at job start Wed Apr 1 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47235 * 2 1 4 4 C 1.50704 * 109.47120 * 119.99781 * 2 1 3 5 5 N 1.29911 * 124.84772 * 120.00196 * 4 2 1 6 6 C 1.36082 * 108.79981 * 179.97438 * 5 4 2 7 7 C 1.39529 * 133.72535 * 180.02562 * 6 5 4 8 8 C 1.38350 * 119.66392 * 179.97438 * 7 6 5 9 9 N 1.39869 * 119.87266 * 180.02562 * 8 7 6 10 10 C 1.34771 * 120.00560 * 213.48080 * 9 8 7 11 11 O 1.21387 * 119.99791 * 5.27797 * 10 9 8 12 12 C 1.49339 * 120.00356 * 185.27880 * 10 9 8 13 13 O 1.21365 * 119.99741 * 359.97438 * 12 10 9 14 14 N 1.34771 * 120.00356 * 179.97438 * 12 10 9 15 15 C 1.46503 * 120.00493 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47584 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47406 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99722 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00251 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99905 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00107 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46889 * 89.99909 * 21 19 17 23 23 H 1.48499 * 109.47400 * 209.99784 * 21 19 17 24 24 H 1.48498 * 109.47411 * 330.00087 * 21 19 17 25 25 C 1.39352 * 120.25927 * 0.02562 * 8 7 6 26 26 C 1.37787 * 120.40479 * 0.27328 * 25 8 7 27 27 C 1.38723 * 119.97634 * 359.45105 * 26 25 8 28 28 O 1.34215 * 124.84891 * 299.97524 * 4 2 1 29 29 H 1.09000 * 109.46758 * 300.00107 * 1 2 3 30 30 H 1.09002 * 109.46910 * 59.99988 * 1 2 3 31 31 H 1.08996 * 109.46758 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47491 * 239.99773 * 2 1 3 33 33 H 1.08999 * 109.47066 * 59.99512 * 3 2 1 34 34 H 1.08999 * 109.47169 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46528 * 300.00115 * 3 2 1 36 36 H 1.07996 * 120.16485 * 359.97438 * 7 6 5 37 37 H 0.97001 * 119.99431 * 33.47370 * 9 8 7 38 38 H 0.97006 * 120.00104 * 0.02562 * 14 12 10 39 39 H 1.08994 * 109.47124 * 300.00421 * 15 14 12 40 40 H 1.09006 * 109.46270 * 59.99827 * 15 14 12 41 41 H 1.09008 * 109.47201 * 300.00573 * 16 15 14 42 42 H 1.09000 * 109.47069 * 59.99767 * 16 15 14 43 43 H 0.96996 * 120.00180 * 180.02562 * 20 19 17 44 44 H 1.08005 * 119.79707 * 179.97438 * 25 8 7 45 45 H 1.08010 * 120.01534 * 179.72793 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7824 -1.7710 1.2211 6 6 3.0415 -2.1364 2.5061 7 6 3.7751 -3.1725 3.0850 8 6 3.8476 -3.2734 4.4629 9 7 4.5822 -4.3100 5.0478 10 6 4.1760 -4.8491 6.2143 11 8 3.1230 -4.5026 6.7089 12 6 5.0213 -5.8727 6.8984 13 8 6.0738 -6.2195 6.4036 14 7 4.6153 -6.4114 8.0651 15 6 5.4442 -7.4160 8.7360 16 6 4.7601 -7.8599 10.0305 17 6 5.6130 -8.8927 10.7208 18 1 6.5493 -9.2020 10.2801 19 6 5.1977 -9.4437 11.9145 20 7 4.0574 -9.0675 12.4510 21 14 6.2547 -10.7246 12.7699 22 1 7.1987 -10.0489 13.6960 23 1 5.3851 -11.6510 13.5384 24 1 7.0207 -11.4920 11.7552 25 6 3.1917 -2.3463 5.2704 26 6 2.4604 -1.3240 4.7059 27 6 2.3833 -1.2069 3.3258 28 8 1.7692 -0.3373 2.4926 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 4.2836 -3.8921 2.4605 37 1 5.3841 -4.6410 4.6137 38 1 3.7738 -6.1345 8.4605 39 1 5.5744 -8.2765 8.0799 40 1 6.4184 -6.9861 8.9692 41 1 4.6302 -6.9990 10.6865 42 1 3.7857 -8.2894 9.7977 43 1 3.7654 -9.4549 13.2909 44 1 3.2530 -2.4323 6.3452 45 1 1.9508 -0.6114 5.3378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543210446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:16 Heat of formation + Delta-G solvation = -65.664908 kcal Electronic energy + Delta-G solvation = -28064.980047 eV Core-core repulsion = 23854.764207 eV Total energy + Delta-G solvation = -4210.215840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.40293 -42.17423 -40.31155 -38.90241 -36.99375 -36.69882 -36.02571 -35.20958 -34.78434 -31.73001 -31.46184 -30.17932 -28.13417 -27.54594 -25.85238 -25.28735 -23.82551 -23.29075 -22.78725 -21.94263 -21.33516 -20.07226 -19.33796 -18.59705 -18.41316 -17.87896 -17.58402 -17.51795 -16.99042 -16.51822 -16.36503 -16.17164 -15.93380 -15.38493 -15.23853 -15.04670 -14.95864 -14.60787 -14.37240 -14.30596 -14.21923 -13.77609 -13.25904 -13.08916 -12.98531 -12.94584 -12.82780 -12.67034 -12.62340 -12.52841 -12.28217 -12.18488 -12.01456 -11.72485 -11.69002 -11.49211 -11.42274 -10.83395 -10.61161 -10.24034 -9.64798 -9.39818 -8.23034 -6.33906 -0.47863 -0.30270 0.36136 1.04481 1.27084 1.37638 1.44060 1.44361 1.55634 1.95101 2.33924 2.45218 2.46320 2.70840 3.12393 3.25383 3.34496 3.72532 3.80699 3.86433 4.00513 4.01215 4.14365 4.24850 4.38131 4.46020 4.46516 4.73370 4.74348 4.82197 4.82713 4.87816 4.89141 4.92824 4.97423 5.03148 5.04724 5.12669 5.28155 5.29773 5.40996 5.45875 5.55909 5.73570 5.80713 6.13192 6.23140 6.45392 6.53527 6.77363 6.83554 7.35787 8.88821 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.040788 B = 0.001505 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.312880 B =18596.563417 C =18948.766967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.004 4.004 3 C -0.147 4.147 4 C 0.263 3.737 5 N -0.508 5.508 6 C 0.023 3.977 7 C -0.089 4.089 8 C 0.146 3.854 9 N -0.631 5.631 10 C 0.521 3.479 11 O -0.511 6.511 12 C 0.507 3.493 13 O -0.543 6.543 14 N -0.684 5.684 15 C 0.137 3.863 16 C 0.017 3.983 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.966 3.034 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.264 1.264 25 C -0.099 4.099 26 C -0.063 4.063 27 C -0.019 4.019 28 O -0.213 6.213 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.157 0.843 37 H 0.435 0.565 38 H 0.416 0.584 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.154 0.846 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 22.415 -25.954 34.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 C -0.205 4.205 4 C 0.051 3.949 5 N -0.238 5.238 6 C -0.089 4.089 7 C -0.111 4.111 8 C 0.051 3.949 9 N -0.279 5.279 10 C 0.303 3.697 11 O -0.385 6.385 12 C 0.287 3.713 13 O -0.421 6.421 14 N -0.335 5.335 15 C 0.015 3.985 16 C -0.020 4.020 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.790 3.210 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.119 4.119 26 C -0.083 4.083 27 C -0.070 4.070 28 O -0.104 6.104 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.174 0.826 37 H 0.275 0.725 38 H 0.253 0.747 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.171 0.829 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.582 22.006 -26.250 34.706 hybrid contribution 0.161 -0.646 1.441 1.588 sum -5.421 21.360 -24.809 33.183 Atomic orbital electron populations 1.21918 0.91189 1.02928 1.04541 1.20240 0.97843 0.96493 0.87793 1.21911 1.01487 0.92545 1.04529 1.27406 0.91525 0.90509 0.85433 1.70649 1.18258 1.13940 1.20916 1.19700 1.01813 0.98391 0.88991 1.19941 1.00741 0.98116 0.92261 1.17403 0.96989 0.89309 0.91173 1.42983 1.29033 1.33988 1.21880 1.20124 0.85523 0.82227 0.81796 1.90794 1.22463 1.60644 1.64624 1.19896 0.86082 0.82889 0.82447 1.90758 1.23914 1.62044 1.65402 1.46044 1.25415 1.40576 1.21454 1.21520 0.93760 0.89370 0.93874 1.19188 0.95780 0.95905 0.91150 1.21455 1.06741 1.23338 1.06793 0.91677 1.25883 0.96360 0.99008 0.97993 1.70068 1.22353 1.44588 1.19679 0.85432 0.78428 0.78577 0.78529 1.19821 1.20864 1.18792 1.21129 0.97245 0.92227 1.01270 1.19949 1.00168 0.99589 0.88550 1.20578 0.99879 0.92668 0.93844 1.84475 1.61208 1.47758 1.16997 0.92027 0.87923 0.92709 0.85471 0.92007 0.92504 0.87978 0.82578 0.72492 0.74690 0.91824 0.91710 0.97235 0.97333 0.92618 0.82887 0.81671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.18 71.98 0.66 -0.35 16 2 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 3 C -0.15 -0.92 9.18 71.98 0.66 -0.26 16 4 C 0.26 4.86 6.74 88.39 0.60 5.45 16 5 N -0.51 -11.81 11.34 -296.30 -3.36 -15.17 16 6 C 0.02 0.54 7.23 39.30 0.28 0.82 16 7 C -0.09 -1.89 10.00 22.61 0.23 -1.66 16 8 C 0.15 3.17 6.27 38.15 0.24 3.41 16 9 N -0.63 -13.60 5.32 -304.85 -1.62 -15.22 16 10 C 0.52 13.95 7.62 87.24 0.66 14.61 16 11 O -0.51 -15.16 14.15 -3.36 -0.05 -15.21 16 12 C 0.51 15.82 7.89 87.24 0.69 16.51 16 13 O -0.54 -18.71 16.48 -3.29 -0.05 -18.77 16 14 N -0.68 -23.18 5.55 -464.53 -2.58 -25.75 16 15 C 0.14 5.48 5.61 86.38 0.48 5.97 16 16 C 0.02 0.85 5.09 29.84 0.15 1.00 16 17 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 18 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 19 C 0.01 0.35 5.46 84.66 0.46 0.81 16 20 N -0.93 -54.01 13.29 21.45 0.28 -53.72 16 21 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.10 -2.11 8.63 22.43 0.19 -1.91 16 26 C -0.06 -1.23 10.05 22.28 0.22 -1.00 16 27 C -0.02 -0.43 7.43 22.89 0.17 -0.26 16 28 O -0.21 -4.39 10.77 -10.58 -0.11 -4.50 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.43 7.82 8.29 -92.71 -0.77 7.05 16 38 H 0.42 13.43 7.94 -92.70 -0.74 12.70 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.15 3.32 6.40 -2.91 -0.02 3.30 16 45 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -68.66 390.99 -0.02 -68.68 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.46 Total: 21.02 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.90 Total: 13.82 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -7.27 Total: -109.88 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.22 Total: -38.48 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.66 -0.02 -68.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543210446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.018 kcal (2) G-P(sol) polarization free energy of solvation -68.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds