Wall clock time and date at job start Wed Apr 1 2020 03:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.09002 * 109.46957 * 304.90504 * 3 2 1 5 5 C 1.50699 * 109.47306 * 184.90281 * 3 2 1 6 6 H 1.07994 * 119.99973 * 245.45235 * 5 3 2 7 7 C 1.37880 * 119.99953 * 65.45021 * 5 3 2 8 8 N 1.31512 * 120.00335 * 9.47124 * 7 5 3 9 9 Si 1.86800 * 119.99981 * 189.47073 * 7 5 3 10 10 H 1.48505 * 109.47231 * 84.99535 * 9 7 5 11 11 H 1.48497 * 109.47392 * 204.99678 * 9 7 5 12 12 H 1.48501 * 109.47124 * 324.99685 * 9 7 5 13 13 N 1.46497 * 109.47330 * 64.90001 * 3 2 1 14 14 C 1.34773 * 120.00338 * 275.00707 * 13 3 2 15 15 O 1.21591 * 119.99746 * 359.97438 * 14 13 3 16 16 C 1.47597 * 120.00560 * 179.97438 * 14 13 3 17 17 C 1.39729 * 120.09209 * 179.97438 * 16 14 13 18 18 C 1.37701 * 119.91185 * 180.02562 * 17 16 14 19 19 C 1.38992 * 120.08913 * 359.97438 * 18 17 16 20 20 O 1.35713 * 119.91172 * 179.97438 * 19 18 17 21 21 C 1.42907 * 116.99993 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47185 * 179.97438 * 21 20 19 23 23 N 1.29949 * 126.29180 * 269.97912 * 22 21 20 24 24 O 1.21303 * 110.25194 * 179.72633 * 23 22 21 25 25 C 1.33642 * 109.80742 * 0.46417 * 24 23 22 26 26 C 1.50703 * 126.54653 * 179.80193 * 25 24 23 27 27 N 1.31125 * 106.90054 * 359.54357 * 25 24 23 28 28 C 1.38994 * 120.17873 * 0.25533 * 19 18 17 29 29 C 1.37704 * 120.08669 * 359.48829 * 28 19 18 30 30 H 1.09000 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46957 * 299.99876 * 1 2 3 32 32 H 1.09004 * 109.47469 * 60.00210 * 1 2 3 33 33 H 1.09004 * 109.46957 * 240.00124 * 2 1 3 34 34 H 1.09005 * 109.47349 * 120.00332 * 2 1 3 35 35 H 0.96995 * 120.00256 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99795 * 94.99325 * 13 3 2 37 37 H 1.08001 * 120.04717 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.95626 * 179.97438 * 18 17 16 39 39 H 1.08998 * 109.47049 * 60.00098 * 21 20 19 40 40 H 1.08997 * 109.46794 * 300.00378 * 21 20 19 41 41 H 1.09009 * 109.47203 * 269.68838 * 26 25 24 42 42 H 1.08999 * 109.47035 * 29.68329 * 26 25 24 43 43 H 1.09003 * 109.47364 * 149.69076 * 26 25 24 44 44 H 1.08005 * 119.95909 * 179.72546 * 28 19 18 45 45 H 1.07997 * 120.05011 * 180.23618 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6937 7 6 4.1411 0.9801 -1.2733 8 7 3.4096 0.7115 -2.3327 9 14 5.9918 0.7327 -1.3291 10 1 6.3289 -0.6067 -0.7836 11 1 6.4618 0.8275 -2.7345 12 1 6.6561 1.7809 -0.5133 13 7 1.6504 2.0983 1.2507 14 6 0.4329 2.6652 1.3637 15 8 -0.3420 2.6327 0.4272 16 6 0.0401 3.3253 2.6240 17 6 -1.2214 3.9141 2.7429 18 6 -1.5838 4.5295 3.9202 19 6 -0.6968 4.5650 4.9897 20 8 -1.0575 5.1730 6.1482 21 6 -0.0979 5.1725 7.2072 22 6 -0.6703 5.8874 8.4039 23 7 -0.5712 7.1573 8.6612 24 8 -1.1437 7.4217 9.6974 25 6 -1.6700 6.3101 10.2204 26 6 -2.4555 6.2062 11.5023 27 7 -1.3771 5.3282 9.4022 28 6 0.5609 3.9847 4.8739 29 6 0.9289 3.3628 3.7017 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8311 0.3853 -3.1431 36 1 2.2687 2.1242 1.9977 37 1 -1.9111 3.8874 1.9122 38 1 -2.5586 4.9852 4.0127 39 1 0.8069 5.6832 6.8778 40 1 0.1432 4.1447 7.4784 41 1 -1.7749 6.0081 12.3305 42 1 -2.9833 7.1428 11.6820 43 1 -3.1763 5.3925 11.4219 44 1 1.2490 4.0183 5.7057 45 1 1.9048 2.9087 3.6137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547275190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:03 Heat of formation + Delta-G solvation = 20.515376 kcal Electronic energy + Delta-G solvation = -28566.844742 eV Core-core repulsion = 24360.365960 eV Total energy + Delta-G solvation = -4206.478783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.15605 -40.50439 -39.16658 -37.30157 -36.32907 -35.00500 -34.19628 -32.51773 -31.51432 -30.89051 -30.19696 -29.48608 -28.50084 -26.88047 -24.31183 -23.63484 -23.06832 -22.70085 -21.67934 -20.38314 -19.41355 -18.94138 -18.39267 -18.07899 -17.58899 -16.52446 -16.22677 -15.88962 -15.37163 -15.12692 -14.90466 -14.62077 -14.47775 -14.08344 -14.05246 -13.70581 -13.67788 -13.36273 -13.07550 -12.91072 -12.68349 -12.62144 -12.28231 -12.13429 -12.05373 -11.62139 -11.49556 -11.35746 -11.17069 -11.02947 -10.98369 -10.77886 -10.47344 -10.34937 -10.20333 -9.68895 -9.13349 -9.10839 -9.05933 -8.48045 -8.35227 -7.81897 -6.14748 -4.20203 0.57998 1.00745 1.28039 1.46152 2.27591 2.67645 3.23906 3.24897 3.28200 3.31728 3.32794 3.51780 4.07608 4.17371 4.27175 4.38275 4.47302 4.59324 4.66844 4.70919 4.72055 4.85724 4.98685 5.18284 5.21445 5.23500 5.25231 5.40892 5.42812 5.59279 5.89426 6.04463 6.20713 6.36079 6.40901 6.45728 6.56363 6.61410 7.00518 7.06881 7.18050 7.32785 7.41802 7.60927 7.61534 7.71536 7.84467 8.07365 8.66533 8.79110 9.12378 9.45613 10.93441 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.001827 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.743049 B =15321.441556 C =16159.070739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.058 0.942 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.544 3.456 15 O -0.546 6.546 16 C -0.155 4.155 17 C -0.024 4.024 18 C -0.156 4.156 19 C 0.142 3.858 20 O -0.309 6.309 21 C 0.154 3.846 22 C 0.169 3.831 23 N -0.359 5.359 24 O 0.087 5.913 25 C 0.180 3.820 26 C -0.063 4.063 27 N -0.470 5.470 28 C -0.216 4.216 29 C -0.046 4.046 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.386 0.614 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 9.870 27.230 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.166 3.834 4 H 0.076 0.924 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.330 3.670 15 O -0.426 6.426 16 C -0.158 4.158 17 C -0.043 4.043 18 C -0.174 4.174 19 C 0.096 3.904 20 O -0.221 6.221 21 C 0.077 3.923 22 C -0.104 4.104 23 N -0.065 5.065 24 O 0.023 5.977 25 C -0.040 4.040 26 C -0.121 4.121 27 N -0.204 5.204 28 C -0.234 4.234 29 C -0.065 4.065 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.220 0.780 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.951 9.965 25.659 29.270 hybrid contribution 1.517 -0.215 0.509 1.615 sum -8.434 9.751 26.169 29.172 Atomic orbital electron populations 1.21851 0.98000 0.98195 1.01592 1.21849 0.93025 0.99790 1.01170 1.18832 0.94389 0.88954 0.81221 0.92433 1.21159 0.90527 1.44106 1.01825 0.92132 1.24881 0.98434 0.95151 0.94982 1.69980 1.35739 1.43670 1.02122 0.86536 0.85040 0.78685 0.77275 1.20438 1.21168 1.19941 1.46432 1.14408 1.55603 1.18528 1.18033 0.82963 0.79244 0.86744 1.90748 1.51677 1.60291 1.39868 1.20302 0.95914 1.04002 0.95582 1.21122 0.95056 0.91807 0.96342 1.20353 1.00268 1.05256 0.91567 1.19104 0.93496 0.92655 0.85105 1.86006 1.41896 1.73480 1.20741 1.20591 0.90279 1.00379 0.81009 1.25156 0.99635 0.87655 0.97958 1.74695 1.14982 1.17187 0.99675 1.85328 1.49636 1.35866 1.26829 1.28920 0.96093 0.80294 0.98685 1.20452 0.98735 1.05931 0.86978 1.71903 1.15208 1.29990 1.03315 1.21115 0.96343 1.05695 1.00280 1.21192 0.98902 0.95008 0.91429 0.95769 0.93968 0.92904 0.90206 0.94719 0.92537 0.78048 0.83780 0.84779 0.88679 0.88210 0.87777 0.88162 0.87476 0.85104 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.15 0.32 -2.77 16 2 C -0.12 -2.86 5.50 -26.73 -0.15 -3.00 16 3 C 0.27 6.70 2.11 -69.08 -0.15 6.56 16 4 H 0.06 1.69 7.52 -51.93 -0.39 1.29 16 5 C -0.54 -14.10 8.66 -34.44 -0.30 -14.40 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.86 5.16 -17.82 -0.09 1.77 16 8 N -0.88 -24.77 12.16 55.43 0.67 -24.10 16 9 Si 0.90 20.52 29.55 -169.99 -5.02 15.50 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.56 4.97 -55.96 -0.28 -14.84 16 14 C 0.54 11.01 6.33 -12.44 -0.08 10.93 16 15 O -0.55 -12.80 13.47 5.29 0.07 -12.73 16 16 C -0.15 -2.49 5.87 -104.96 -0.62 -3.10 16 17 C -0.02 -0.36 9.58 -39.22 -0.38 -0.73 16 18 C -0.16 -1.99 9.97 -39.50 -0.39 -2.38 16 19 C 0.14 1.75 6.70 -39.02 -0.26 1.49 16 20 O -0.31 -3.69 10.11 -18.84 -0.19 -3.88 16 21 C 0.15 1.45 5.36 36.00 0.19 1.65 16 22 C 0.17 1.78 7.85 -156.37 -1.23 0.55 16 23 N -0.36 -3.89 12.16 30.90 0.38 -3.52 16 24 O 0.09 0.74 11.31 18.10 0.20 0.94 16 25 C 0.18 1.22 8.51 -13.06 -0.11 1.10 16 26 C -0.06 -0.08 10.51 36.01 0.38 0.30 16 27 N -0.47 -4.59 11.55 -9.87 -0.11 -4.70 16 28 C -0.22 -2.47 9.01 -39.50 -0.36 -2.82 16 29 C -0.05 -0.62 9.53 -39.21 -0.37 -0.99 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.92 5.65 -51.93 -0.29 0.62 16 32 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 33 H 0.08 2.09 6.80 -51.93 -0.35 1.74 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 36 H 0.39 6.90 6.55 -40.82 -0.27 6.64 16 37 H 0.14 2.09 7.64 -52.49 -0.40 1.69 16 38 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.10 0.75 7.64 -51.93 -0.40 0.35 16 40 H 0.10 0.77 7.66 -51.93 -0.40 0.38 16 41 H 0.10 -0.03 8.14 -51.92 -0.42 -0.46 16 42 H 0.10 -0.06 8.14 -51.93 -0.42 -0.49 16 43 H 0.11 0.10 8.14 -51.93 -0.42 -0.33 16 44 H 0.13 1.11 6.28 -52.48 -0.33 0.78 16 45 H 0.13 1.56 6.39 -52.49 -0.34 1.22 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -33.89 380.54 -7.78 -41.67 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.65 Total: 5.78 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.59 Total: -5.86 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.66 Total: -47.16 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.67 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.89 -7.78 -41.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547275190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.185 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds