Wall clock time and date at job start Wed Apr 1 2020 03:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.09002 * 109.46957 * 304.90504 * 3 2 1 5 5 C 1.50699 * 109.47306 * 184.90281 * 3 2 1 6 6 H 1.07994 * 119.99973 * 245.45235 * 5 3 2 7 7 C 1.37880 * 119.99953 * 65.45021 * 5 3 2 8 8 N 1.31512 * 120.00335 * 9.47124 * 7 5 3 9 9 Si 1.86800 * 119.99981 * 189.47073 * 7 5 3 10 10 H 1.48505 * 109.47231 * 84.99535 * 9 7 5 11 11 H 1.48497 * 109.47392 * 204.99678 * 9 7 5 12 12 H 1.48501 * 109.47124 * 324.99685 * 9 7 5 13 13 N 1.46497 * 109.47330 * 64.90001 * 3 2 1 14 14 C 1.34773 * 120.00338 * 275.00707 * 13 3 2 15 15 O 1.21591 * 119.99746 * 359.97438 * 14 13 3 16 16 C 1.47597 * 120.00560 * 179.97438 * 14 13 3 17 17 C 1.39729 * 120.09209 * 179.97438 * 16 14 13 18 18 C 1.37701 * 119.91185 * 180.02562 * 17 16 14 19 19 C 1.38992 * 120.08913 * 359.97438 * 18 17 16 20 20 O 1.35713 * 119.91172 * 179.97438 * 19 18 17 21 21 C 1.42907 * 116.99993 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47185 * 179.97438 * 21 20 19 23 23 N 1.29949 * 126.29180 * 269.97912 * 22 21 20 24 24 O 1.21303 * 110.25194 * 179.72633 * 23 22 21 25 25 C 1.33642 * 109.80742 * 0.46417 * 24 23 22 26 26 C 1.50703 * 126.54653 * 179.80193 * 25 24 23 27 27 N 1.31125 * 106.90054 * 359.54357 * 25 24 23 28 28 C 1.38994 * 120.17873 * 0.25533 * 19 18 17 29 29 C 1.37704 * 120.08669 * 359.48829 * 28 19 18 30 30 H 1.09000 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46957 * 299.99876 * 1 2 3 32 32 H 1.09004 * 109.47469 * 60.00210 * 1 2 3 33 33 H 1.09004 * 109.46957 * 240.00124 * 2 1 3 34 34 H 1.09005 * 109.47349 * 120.00332 * 2 1 3 35 35 H 0.96995 * 120.00256 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99795 * 94.99325 * 13 3 2 37 37 H 1.08001 * 120.04717 * 359.97438 * 17 16 14 38 38 H 1.07999 * 119.95626 * 179.97438 * 18 17 16 39 39 H 1.08998 * 109.47049 * 60.00098 * 21 20 19 40 40 H 1.08997 * 109.46794 * 300.00378 * 21 20 19 41 41 H 1.09009 * 109.47203 * 269.68838 * 26 25 24 42 42 H 1.08999 * 109.47035 * 29.68329 * 26 25 24 43 43 H 1.09003 * 109.47364 * 149.69076 * 26 25 24 44 44 H 1.08005 * 119.95909 * 179.72546 * 28 19 18 45 45 H 1.07997 * 120.05011 * 180.23618 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6937 7 6 4.1411 0.9801 -1.2733 8 7 3.4096 0.7115 -2.3327 9 14 5.9918 0.7327 -1.3291 10 1 6.3289 -0.6067 -0.7836 11 1 6.4618 0.8275 -2.7345 12 1 6.6561 1.7809 -0.5133 13 7 1.6504 2.0983 1.2507 14 6 0.4329 2.6652 1.3637 15 8 -0.3420 2.6327 0.4272 16 6 0.0401 3.3253 2.6240 17 6 -1.2214 3.9141 2.7429 18 6 -1.5838 4.5295 3.9202 19 6 -0.6968 4.5650 4.9897 20 8 -1.0575 5.1730 6.1482 21 6 -0.0979 5.1725 7.2072 22 6 -0.6703 5.8874 8.4039 23 7 -0.5712 7.1573 8.6612 24 8 -1.1437 7.4217 9.6974 25 6 -1.6700 6.3101 10.2204 26 6 -2.4555 6.2062 11.5023 27 7 -1.3771 5.3282 9.4022 28 6 0.5609 3.9847 4.8739 29 6 0.9289 3.3628 3.7017 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8311 0.3853 -3.1431 36 1 2.2687 2.1242 1.9977 37 1 -1.9111 3.8874 1.9122 38 1 -2.5586 4.9852 4.0127 39 1 0.8069 5.6832 6.8778 40 1 0.1432 4.1447 7.4784 41 1 -1.7749 6.0081 12.3305 42 1 -2.9833 7.1428 11.6820 43 1 -3.1763 5.3925 11.4219 44 1 1.2490 4.0183 5.7057 45 1 1.9048 2.9087 3.6137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547275190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:02 Heat of formation + Delta-G solvation = -3.294906 kcal Electronic energy + Delta-G solvation = -28567.877234 eV Core-core repulsion = 24360.365960 eV Total energy + Delta-G solvation = -4207.511274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.80051 -41.56105 -40.59494 -38.42537 -37.04437 -36.82074 -34.75091 -34.35617 -33.15783 -32.08970 -31.30206 -29.95996 -29.38303 -28.69597 -25.35642 -24.91324 -24.36510 -23.79908 -22.51665 -21.90083 -21.15218 -19.79168 -19.41469 -18.94400 -18.73293 -17.70093 -17.53722 -17.06741 -16.91187 -16.25581 -16.18626 -15.93107 -15.64289 -15.24340 -14.97834 -14.59692 -14.50974 -14.28459 -14.18559 -14.05623 -13.87442 -13.59794 -13.40369 -13.39369 -13.24589 -13.01946 -12.91115 -12.79537 -12.61582 -12.34461 -12.19608 -12.11459 -12.06520 -11.95049 -11.61770 -11.09357 -11.06992 -10.74079 -10.52272 -10.14550 -9.72278 -9.32264 -8.18625 -6.31735 -0.12835 -0.01750 0.27456 0.80899 1.45117 1.46137 1.55552 1.79614 1.95845 1.98320 2.36063 2.61665 2.67107 2.84847 2.88003 3.13166 3.59346 3.77138 3.81903 3.92106 3.95795 4.14950 4.21323 4.35687 4.45069 4.46872 4.52320 4.53540 4.59928 4.67139 4.71981 4.89629 4.91653 4.99700 5.07522 5.14320 5.16182 5.22641 5.36886 5.42583 5.51067 5.54168 5.61927 5.75333 5.93160 6.07242 6.14233 6.76402 6.98097 7.00431 7.33769 7.56104 8.90125 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.001827 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.743049 B =15321.441556 C =16159.070739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.275 3.725 4 H 0.004 0.996 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.699 5.699 14 C 0.543 3.457 15 O -0.588 6.588 16 C -0.180 4.180 17 C -0.030 4.030 18 C -0.158 4.158 19 C 0.151 3.849 20 O -0.319 6.319 21 C 0.148 3.852 22 C 0.155 3.845 23 N -0.385 5.385 24 O 0.084 5.916 25 C 0.194 3.806 26 C -0.063 4.063 27 N -0.501 5.501 28 C -0.205 4.205 29 C -0.040 4.040 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.112 0.888 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.168 0.832 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.861 10.209 31.066 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.331 3.669 15 O -0.471 6.471 16 C -0.184 4.184 17 C -0.049 4.049 18 C -0.176 4.176 19 C 0.105 3.895 20 O -0.232 6.232 21 C 0.072 3.928 22 C -0.118 4.118 23 N -0.093 5.093 24 O 0.021 5.979 25 C -0.025 4.025 26 C -0.121 4.121 27 N -0.236 5.236 28 C -0.223 4.223 29 C -0.059 4.059 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.238 0.762 37 H 0.152 0.848 38 H 0.167 0.833 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.133 0.867 44 H 0.185 0.815 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.102 10.316 29.561 32.606 hybrid contribution 1.133 -0.211 -0.497 1.256 sum -7.969 10.104 29.064 31.785 Atomic orbital electron populations 1.21692 0.96795 0.99365 1.00444 1.21698 0.94010 0.98936 1.00432 1.18427 0.93884 0.89117 0.81424 0.97848 1.21524 0.91191 1.43799 1.02221 0.90856 1.25778 1.03188 0.94810 0.94561 1.70135 1.37792 1.44699 1.02755 0.85426 0.79206 0.79039 0.77071 1.19534 1.21513 1.18777 1.46163 1.15233 1.55735 1.17656 1.18645 0.82040 0.78403 0.87771 1.90720 1.52742 1.61790 1.41833 1.19983 0.97510 1.06275 0.94615 1.21068 0.94576 0.92307 0.96954 1.20451 1.01197 1.04911 0.91076 1.19202 0.93564 0.91699 0.85063 1.85993 1.43092 1.73116 1.20954 1.20887 0.90129 1.01713 0.80099 1.25403 1.00029 0.87810 0.98539 1.74671 1.16207 1.17623 1.00815 1.85289 1.49721 1.36411 1.26438 1.29943 0.94425 0.79061 0.99057 1.20840 0.98820 1.07533 0.84861 1.71916 1.16457 1.31118 1.04104 1.21419 0.96435 1.04001 1.00467 1.21341 0.98902 0.94681 0.90979 0.93268 0.93668 0.95485 0.92921 0.93182 0.92642 0.76206 0.84764 0.83292 0.87036 0.86320 0.85503 0.85777 0.86738 0.81490 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.11 -5.47 5.50 30.59 0.17 -5.30 16 3 C 0.27 14.21 2.11 44.25 0.09 14.30 16 4 H 0.00 0.22 7.52 -2.39 -0.02 0.20 16 5 C -0.55 -29.01 8.66 25.60 0.22 -28.79 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.93 5.16 84.66 0.44 1.36 16 8 N -0.92 -53.28 12.16 21.45 0.26 -53.02 16 9 Si 0.97 42.02 29.55 68.60 2.03 44.05 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.70 -29.34 4.97 -449.21 -2.23 -31.57 16 14 C 0.54 22.54 6.33 86.71 0.55 23.09 16 15 O -0.59 -29.05 13.47 -4.00 -0.05 -29.11 16 16 C -0.18 -5.77 5.87 -20.08 -0.12 -5.88 16 17 C -0.03 -0.88 9.58 22.50 0.22 -0.66 16 18 C -0.16 -3.84 9.97 22.32 0.22 -3.62 16 19 C 0.15 3.36 6.70 22.63 0.15 3.51 16 20 O -0.32 -6.90 10.11 -90.34 -0.91 -7.81 16 21 C 0.15 2.41 5.36 71.23 0.38 2.79 16 22 C 0.15 3.02 7.85 138.46 1.09 4.10 16 23 N -0.39 -7.90 12.16 -60.31 -0.73 -8.63 16 24 O 0.08 1.31 11.31 74.84 0.85 2.16 16 25 C 0.19 2.23 8.51 88.38 0.75 2.98 16 26 C -0.06 0.03 10.51 71.24 0.75 0.78 16 27 N -0.50 -8.96 11.55 -303.18 -3.50 -12.46 16 28 C -0.20 -4.03 9.01 22.32 0.20 -3.83 16 29 C -0.04 -0.98 9.53 22.51 0.21 -0.77 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 2.00 5.65 -2.38 -0.01 1.99 16 32 H 0.03 1.32 7.84 -2.38 -0.02 1.31 16 33 H 0.05 2.85 6.80 -2.38 -0.02 2.84 16 34 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.40 14.03 6.55 -92.71 -0.61 13.42 16 37 H 0.13 4.10 7.64 -2.91 -0.02 4.08 16 38 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 39 H 0.11 1.42 7.64 -2.39 -0.02 1.40 16 40 H 0.12 1.45 7.66 -2.39 -0.02 1.44 16 41 H 0.13 -0.54 8.14 -2.38 -0.02 -0.56 16 42 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.17 2.05 6.28 -2.91 -0.02 2.04 16 45 H 0.15 3.08 6.39 -2.91 -0.02 3.07 16 Total: -1.00 -77.11 380.54 2.07 -75.03 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.44 Total: 22.39 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.94 Total: -1.03 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -6.21 Total: -105.68 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.12 Total: -34.76 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -77.11 2.07 -75.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547275190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.740 kcal (2) G-P(sol) polarization free energy of solvation -77.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds