Wall clock time and date at job start Wed Apr 1 2020 03:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46712 * 2 1 4 4 H 1.09004 * 109.47313 * 55.00209 * 3 2 1 5 5 C 1.50699 * 109.47131 * 174.99848 * 3 2 1 6 6 H 1.08004 * 120.00364 * 119.99359 * 5 3 2 7 7 C 1.37878 * 120.00183 * 300.00759 * 5 3 2 8 8 N 1.31514 * 119.99977 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00040 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47138 * 119.99380 * 9 7 5 12 12 H 1.48505 * 109.47089 * 239.99204 * 9 7 5 13 13 N 1.46497 * 109.47266 * 294.99922 * 3 2 1 14 14 C 1.34776 * 120.00055 * 85.00125 * 13 3 2 15 15 O 1.21590 * 119.99800 * 0.02562 * 14 13 3 16 16 C 1.47607 * 120.00242 * 179.97438 * 14 13 3 17 17 C 1.39738 * 120.08579 * 0.27535 * 16 14 13 18 18 C 1.37696 * 119.91059 * 180.27358 * 17 16 14 19 19 C 1.38998 * 120.08568 * 359.45088 * 18 17 16 20 20 O 1.35711 * 119.91150 * 180.30414 * 19 18 17 21 21 C 1.42898 * 117.00372 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47452 * 179.97438 * 21 20 19 23 23 N 1.29947 * 126.28767 * 90.02295 * 22 21 20 24 24 O 1.21298 * 110.25067 * 179.97438 * 23 22 21 25 25 C 1.33637 * 109.81312 * 359.97438 * 24 23 22 26 26 C 1.50700 * 126.55388 * 179.97438 * 25 24 23 27 27 N 1.31133 * 106.89848 * 359.77080 * 25 24 23 28 28 C 1.38999 * 120.17736 * 0.27883 * 19 18 17 29 29 C 1.37693 * 120.08710 * 359.97438 * 28 19 18 30 30 H 1.08997 * 109.47022 * 60.00321 * 1 2 3 31 31 H 1.09009 * 109.46523 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47124 * 299.99359 * 1 2 3 33 33 H 1.08997 * 109.46603 * 240.00098 * 2 1 3 34 34 H 1.08997 * 109.46814 * 120.00191 * 2 1 3 35 35 H 0.97001 * 120.00476 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99970 * 265.00343 * 13 3 2 37 37 H 1.07998 * 120.04334 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.95978 * 179.73309 * 18 17 16 39 39 H 1.09003 * 109.46788 * 299.99869 * 21 20 19 40 40 H 1.08998 * 109.47527 * 59.99216 * 21 20 19 41 41 H 1.09001 * 109.46865 * 359.97438 * 26 25 24 42 42 H 1.08995 * 109.46918 * 119.97737 * 26 25 24 43 43 H 1.09003 * 109.47588 * 239.98114 * 26 25 24 44 44 H 1.07996 * 119.95189 * 180.02562 * 28 19 18 45 45 H 1.08006 * 120.04504 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8802 1.3811 10 1 6.5988 1.5444 0.1932 11 1 6.3999 1.6159 2.6091 12 1 6.4963 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6325 -0.4317 16 6 0.0447 3.3247 -2.6280 17 6 0.9338 3.3583 -3.7056 18 6 0.5681 3.9803 -4.8783 19 6 -0.6879 4.5643 -4.9951 20 8 -1.0470 5.1710 -6.1547 21 6 -2.3518 5.7512 -6.2064 22 6 -2.5711 6.3747 -7.5607 23 7 -3.0723 5.7870 -8.6058 24 8 -3.1179 6.5592 -9.5401 25 6 -2.6361 7.7490 -9.1684 26 6 -2.5176 8.9788 -10.0314 27 7 -2.2901 7.6433 -7.9080 28 6 -1.5772 4.5281 -3.9274 29 6 -1.2170 3.9126 -2.7496 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8293 -0.0606 2.9502 36 1 2.2719 2.1231 -1.9977 37 1 1.9079 2.9005 -3.6173 38 1 1.2562 4.0104 -5.7102 39 1 -3.1005 4.9774 -6.0366 40 1 -2.4397 6.5170 -5.4357 41 1 -2.8900 8.7579 -11.0317 42 1 -3.1050 9.7866 -9.5951 43 1 -1.4721 9.2812 -10.0916 44 1 -2.5522 4.9827 -4.0222 45 1 -1.9087 3.8846 -1.9205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547275191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:06 Heat of formation + Delta-G solvation = 21.778561 kcal Electronic energy + Delta-G solvation = -28532.457231 eV Core-core repulsion = 24326.033225 eV Total energy + Delta-G solvation = -4206.424007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.15936 -40.50432 -39.16513 -37.30258 -36.33089 -35.02041 -34.19723 -32.51136 -31.31561 -31.15621 -30.04308 -29.48872 -28.48920 -26.89910 -24.31838 -23.66961 -23.05684 -22.60289 -21.73381 -20.36129 -19.38067 -18.93211 -18.39627 -18.08176 -17.59071 -16.51597 -16.23147 -15.82126 -15.39414 -15.16930 -14.95782 -14.51299 -14.45490 -14.19291 -14.05353 -13.71867 -13.55571 -13.50987 -12.96898 -12.85515 -12.70122 -12.60610 -12.36368 -12.12438 -12.01875 -11.63130 -11.52412 -11.24697 -11.17421 -10.99622 -10.93853 -10.83022 -10.47571 -10.30381 -10.16881 -9.61862 -9.14119 -9.09515 -9.01992 -8.49732 -8.34733 -7.79423 -6.12003 -4.21299 0.57900 1.00037 1.28800 1.45841 2.27509 2.67119 3.23554 3.24316 3.27628 3.32086 3.34624 3.51364 4.07743 4.17346 4.27045 4.38452 4.47746 4.58736 4.68618 4.70047 4.75508 4.85363 4.98467 5.18390 5.19588 5.24546 5.28986 5.38475 5.41750 5.50647 5.92280 6.11258 6.22568 6.41183 6.43931 6.48329 6.52204 6.68249 7.05700 7.08064 7.21874 7.37884 7.45515 7.60721 7.63136 7.74491 7.91075 8.18717 8.66698 8.78252 9.12674 9.46047 10.93382 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.001756 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.541404 B =15939.208264 C =16656.512099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.544 3.456 15 O -0.547 6.547 16 C -0.155 4.155 17 C -0.048 4.048 18 C -0.154 4.154 19 C 0.142 3.858 20 O -0.309 6.309 21 C 0.154 3.846 22 C 0.169 3.831 23 N -0.360 5.360 24 O 0.087 5.913 25 C 0.181 3.819 26 C -0.062 4.062 27 N -0.470 5.470 28 C -0.217 4.217 29 C -0.023 4.023 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.387 0.613 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 14.875 -23.828 30.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.330 3.670 15 O -0.427 6.427 16 C -0.158 4.158 17 C -0.067 4.067 18 C -0.172 4.172 19 C 0.096 3.904 20 O -0.221 6.221 21 C 0.078 3.922 22 C -0.104 4.104 23 N -0.066 5.066 24 O 0.024 5.976 25 C -0.040 4.040 26 C -0.120 4.120 27 N -0.204 5.204 28 C -0.236 4.236 29 C -0.042 4.042 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.149 0.851 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.586 14.037 -22.679 29.492 hybrid contribution 1.142 0.069 -0.287 1.179 sum -11.444 14.106 -22.966 29.281 Atomic orbital electron populations 1.21848 0.98345 0.98049 1.01275 1.21935 0.92646 0.99734 1.02308 1.18826 0.94276 0.89230 0.80905 0.93137 1.21264 0.90671 1.38948 1.06318 0.92030 1.24884 0.98597 0.94807 0.95389 1.69904 1.35023 1.37654 1.09315 0.86405 0.84890 0.77751 0.78117 1.19745 1.20896 1.20895 1.46451 1.14377 1.55554 1.18570 1.18033 0.82975 0.79239 0.86732 1.90742 1.51583 1.60405 1.40019 1.20302 0.95883 1.03992 0.95642 1.21228 0.99033 0.95197 0.91200 1.20301 0.94753 1.02728 0.99456 1.19102 0.94121 0.92897 0.84253 1.86000 1.32394 1.69469 1.34248 1.20589 0.85126 0.97735 0.88800 1.25157 0.99948 0.87848 0.97413 1.74689 1.19757 1.15501 0.96647 1.85331 1.60163 1.18649 1.33506 1.28926 0.93205 0.90635 0.91193 1.20445 1.05809 0.88238 0.97550 1.71892 1.21239 1.16901 1.10417 1.21157 1.00549 1.07587 0.94311 1.21074 0.95001 0.91658 0.96478 0.94248 0.95861 0.93116 0.95017 0.88239 0.92618 0.77968 0.84471 0.84764 0.88695 0.88216 0.88257 0.87604 0.87587 0.85116 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.77 2.24 -69.09 -0.15 6.62 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.70 -14.65 4.97 -55.96 -0.28 -14.93 16 14 C 0.54 11.04 6.33 -12.44 -0.08 10.96 16 15 O -0.55 -12.82 13.48 5.29 0.07 -12.75 16 16 C -0.15 -2.50 5.88 -104.96 -0.62 -3.11 16 17 C -0.05 -0.65 9.53 -39.22 -0.37 -1.02 16 18 C -0.15 -1.91 9.97 -39.50 -0.39 -2.30 16 19 C 0.14 1.75 6.70 -39.02 -0.26 1.49 16 20 O -0.31 -3.70 10.11 -18.84 -0.19 -3.89 16 21 C 0.15 1.46 5.36 36.00 0.19 1.65 16 22 C 0.17 1.78 7.85 -156.37 -1.23 0.56 16 23 N -0.36 -3.88 12.16 30.90 0.38 -3.51 16 24 O 0.09 0.74 11.31 18.12 0.20 0.94 16 25 C 0.18 1.22 8.51 -13.06 -0.11 1.11 16 26 C -0.06 -0.08 10.51 36.01 0.38 0.30 16 27 N -0.47 -4.60 11.55 -9.87 -0.11 -4.72 16 28 C -0.22 -2.57 9.01 -39.50 -0.36 -2.93 16 29 C -0.02 -0.33 9.58 -39.22 -0.38 -0.71 16 30 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 31 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.39 7.00 6.56 -40.82 -0.27 6.73 16 37 H 0.14 1.65 6.39 -52.49 -0.34 1.31 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.10 0.75 7.65 -51.93 -0.40 0.35 16 40 H 0.10 0.78 7.65 -51.93 -0.40 0.39 16 41 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.11 0.02 8.14 -51.93 -0.42 -0.41 16 43 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.13 1.16 6.28 -52.49 -0.33 0.83 16 45 H 0.14 2.00 7.64 -52.48 -0.40 1.60 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -33.76 379.18 -7.82 -41.58 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.61 Total: 6.10 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -3.60 Total: -6.10 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.61 Total: -47.15 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.09 Total: -15.70 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.76 -7.82 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547275191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.360 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds