Wall clock time and date at job start Wed Apr 1 2020 03:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46712 * 2 1 4 4 H 1.09004 * 109.47313 * 55.00209 * 3 2 1 5 5 C 1.50699 * 109.47131 * 174.99848 * 3 2 1 6 6 H 1.08004 * 120.00364 * 119.99359 * 5 3 2 7 7 C 1.37878 * 120.00183 * 300.00759 * 5 3 2 8 8 N 1.31514 * 119.99977 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00040 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47138 * 119.99380 * 9 7 5 12 12 H 1.48505 * 109.47089 * 239.99204 * 9 7 5 13 13 N 1.46497 * 109.47266 * 294.99922 * 3 2 1 14 14 C 1.34776 * 120.00055 * 85.00125 * 13 3 2 15 15 O 1.21590 * 119.99800 * 0.02562 * 14 13 3 16 16 C 1.47607 * 120.00242 * 179.97438 * 14 13 3 17 17 C 1.39738 * 120.08579 * 0.27535 * 16 14 13 18 18 C 1.37696 * 119.91059 * 180.27358 * 17 16 14 19 19 C 1.38998 * 120.08568 * 359.45088 * 18 17 16 20 20 O 1.35711 * 119.91150 * 180.30414 * 19 18 17 21 21 C 1.42898 * 117.00372 * 180.02562 * 20 19 18 22 22 C 1.50697 * 109.47452 * 179.97438 * 21 20 19 23 23 N 1.29947 * 126.28767 * 90.02295 * 22 21 20 24 24 O 1.21298 * 110.25067 * 179.97438 * 23 22 21 25 25 C 1.33637 * 109.81312 * 359.97438 * 24 23 22 26 26 C 1.50700 * 126.55388 * 179.97438 * 25 24 23 27 27 N 1.31133 * 106.89848 * 359.77080 * 25 24 23 28 28 C 1.38999 * 120.17736 * 0.27883 * 19 18 17 29 29 C 1.37693 * 120.08710 * 359.97438 * 28 19 18 30 30 H 1.08997 * 109.47022 * 60.00321 * 1 2 3 31 31 H 1.09009 * 109.46523 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47124 * 299.99359 * 1 2 3 33 33 H 1.08997 * 109.46603 * 240.00098 * 2 1 3 34 34 H 1.08997 * 109.46814 * 120.00191 * 2 1 3 35 35 H 0.97001 * 120.00476 * 180.02562 * 8 7 5 36 36 H 0.96998 * 119.99970 * 265.00343 * 13 3 2 37 37 H 1.07998 * 120.04334 * 0.02562 * 17 16 14 38 38 H 1.08002 * 119.95978 * 179.73309 * 18 17 16 39 39 H 1.09003 * 109.46788 * 299.99869 * 21 20 19 40 40 H 1.08998 * 109.47527 * 59.99216 * 21 20 19 41 41 H 1.09001 * 109.46865 * 359.97438 * 26 25 24 42 42 H 1.08995 * 109.46918 * 119.97737 * 26 25 24 43 43 H 1.09003 * 109.47588 * 239.98114 * 26 25 24 44 44 H 1.07996 * 119.95189 * 180.02562 * 28 19 18 45 45 H 1.08006 * 120.04504 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8802 1.3811 10 1 6.5988 1.5444 0.1932 11 1 6.3999 1.6159 2.6091 12 1 6.4963 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3669 15 8 -0.3413 2.6325 -0.4317 16 6 0.0447 3.3247 -2.6280 17 6 0.9338 3.3583 -3.7056 18 6 0.5681 3.9803 -4.8783 19 6 -0.6879 4.5643 -4.9951 20 8 -1.0470 5.1710 -6.1547 21 6 -2.3518 5.7512 -6.2064 22 6 -2.5711 6.3747 -7.5607 23 7 -3.0723 5.7870 -8.6058 24 8 -3.1179 6.5592 -9.5401 25 6 -2.6361 7.7490 -9.1684 26 6 -2.5176 8.9788 -10.0314 27 7 -2.2901 7.6433 -7.9080 28 6 -1.5772 4.5281 -3.9274 29 6 -1.2170 3.9126 -2.7496 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8293 -0.0606 2.9502 36 1 2.2719 2.1231 -1.9977 37 1 1.9079 2.9005 -3.6173 38 1 1.2562 4.0104 -5.7102 39 1 -3.1005 4.9774 -6.0366 40 1 -2.4397 6.5170 -5.4357 41 1 -2.8900 8.7579 -11.0317 42 1 -3.1050 9.7866 -9.5951 43 1 -1.4721 9.2812 -10.0916 44 1 -2.5522 4.9827 -4.0222 45 1 -1.9087 3.8846 -1.9205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547275191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:05 Heat of formation + Delta-G solvation = -1.735064 kcal Electronic energy + Delta-G solvation = -28533.476859 eV Core-core repulsion = 24326.033225 eV Total energy + Delta-G solvation = -4207.443634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.80778 -41.56400 -40.59858 -38.43001 -37.05410 -36.84380 -34.75117 -34.36611 -33.03588 -32.21349 -31.25134 -29.95198 -29.32070 -28.76844 -25.35264 -25.01094 -24.23543 -23.83069 -22.46360 -21.98179 -21.10642 -19.78935 -19.43069 -18.95474 -18.72649 -17.77701 -17.43301 -17.07395 -16.88695 -16.34853 -16.21012 -15.92134 -15.61326 -15.12343 -15.09349 -14.60023 -14.55971 -14.21718 -14.20883 -14.09326 -13.82796 -13.57813 -13.46554 -13.41474 -13.16132 -13.01081 -12.87160 -12.78474 -12.70416 -12.34934 -12.15082 -12.11560 -12.04845 -11.94566 -11.58739 -11.07887 -11.03757 -10.76997 -10.52638 -10.15139 -9.71153 -9.32352 -8.15648 -6.32813 -0.13356 -0.02179 0.27439 0.80131 1.44372 1.45659 1.57347 1.79435 1.95488 1.96963 2.35766 2.62153 2.66080 2.83988 2.87426 3.14090 3.59962 3.76146 3.79392 3.93773 3.94747 4.13667 4.21344 4.32113 4.44100 4.48070 4.50331 4.57364 4.62394 4.65819 4.75417 4.88174 4.93772 5.02976 5.08488 5.14027 5.17243 5.24409 5.36811 5.44262 5.49154 5.56504 5.62429 5.79942 5.93440 6.13616 6.16968 6.74827 6.97748 6.99931 7.33553 7.55461 8.90030 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024373 B = 0.001756 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.541404 B =15939.208264 C =16656.512099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.588 6.588 16 C -0.181 4.181 17 C -0.042 4.042 18 C -0.154 4.154 19 C 0.150 3.850 20 O -0.317 6.317 21 C 0.148 3.852 22 C 0.155 3.845 23 N -0.385 5.385 24 O 0.085 5.915 25 C 0.195 3.805 26 C -0.063 4.063 27 N -0.502 5.502 28 C -0.207 4.207 29 C -0.029 4.029 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.118 0.882 44 H 0.163 0.837 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 16.288 -26.884 33.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.349 5.349 14 C 0.332 3.668 15 O -0.471 6.471 16 C -0.184 4.184 17 C -0.061 4.061 18 C -0.173 4.173 19 C 0.104 3.896 20 O -0.230 6.230 21 C 0.072 3.928 22 C -0.117 4.117 23 N -0.093 5.093 24 O 0.022 5.978 25 C -0.024 4.024 26 C -0.120 4.120 27 N -0.236 5.236 28 C -0.226 4.226 29 C -0.048 4.048 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.237 0.763 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.136 0.864 44 H 0.180 0.820 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.237 15.477 -25.790 32.471 hybrid contribution 0.931 -0.225 0.509 1.085 sum -11.306 15.253 -25.281 31.616 Atomic orbital electron populations 1.21685 0.97055 0.99136 1.00251 1.21788 0.93718 0.99108 1.01368 1.18420 0.93801 0.89218 0.81218 0.98204 1.21597 0.91296 1.38882 1.06753 0.90990 1.25765 1.03295 0.94380 0.95020 1.70053 1.36979 1.38381 1.09849 0.85321 0.79150 0.77799 0.78195 1.18427 1.21074 1.20464 1.46193 1.15265 1.55733 1.17679 1.18642 0.82014 0.78387 0.87782 1.90712 1.52574 1.61858 1.41907 1.19993 0.97623 1.06307 0.94480 1.21301 0.99040 0.94983 0.90739 1.20514 0.95283 1.02016 0.99443 1.19232 0.94058 0.91910 0.84397 1.85991 1.33859 1.69261 1.33860 1.20859 0.84247 0.98620 0.89085 1.25375 1.00251 0.88352 0.97766 1.74665 1.20774 1.16657 0.97165 1.85294 1.60362 1.19203 1.32934 1.29946 0.90628 0.90990 0.90875 1.20834 1.06984 0.86193 0.97996 1.71905 1.22909 1.16833 1.12002 1.21363 1.01776 1.06513 0.92927 1.21106 0.94322 0.92001 0.97368 0.93936 0.93558 0.95430 0.94031 0.90841 0.92603 0.76251 0.83219 0.82733 0.87147 0.86587 0.85706 0.85957 0.86384 0.81998 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.99 0.61 -5.12 16 2 C -0.12 -6.06 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.41 2.24 44.24 0.10 14.51 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.01 16 5 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.84 5.29 84.65 0.45 1.28 16 8 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.70 -29.75 4.97 -449.21 -2.23 -31.99 16 14 C 0.54 22.59 6.33 86.72 0.55 23.14 16 15 O -0.59 -28.81 13.48 -4.00 -0.05 -28.87 16 16 C -0.18 -5.79 5.88 -20.08 -0.12 -5.91 16 17 C -0.04 -1.08 9.53 22.50 0.21 -0.87 16 18 C -0.15 -3.47 9.97 22.32 0.22 -3.25 16 19 C 0.15 3.35 6.70 22.63 0.15 3.50 16 20 O -0.32 -6.87 10.11 -90.32 -0.91 -7.78 16 21 C 0.15 2.49 5.36 71.24 0.38 2.87 16 22 C 0.16 3.06 7.85 138.46 1.09 4.14 16 23 N -0.38 -7.89 12.16 -60.34 -0.73 -8.63 16 24 O 0.08 1.32 11.31 74.89 0.85 2.17 16 25 C 0.19 2.25 8.51 88.38 0.75 3.00 16 26 C -0.06 0.02 10.51 71.24 0.75 0.77 16 27 N -0.50 -9.06 11.55 -303.21 -3.50 -12.56 16 28 C -0.21 -4.47 9.01 22.32 0.20 -4.27 16 29 C -0.03 -0.81 9.58 22.50 0.22 -0.59 16 30 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 33 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 4.09 5.95 -2.39 -0.01 4.08 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.40 14.42 6.56 -92.71 -0.61 13.82 16 37 H 0.15 3.36 6.39 -2.91 -0.02 3.34 16 38 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.11 1.48 7.65 -2.39 -0.02 1.47 16 40 H 0.12 1.54 7.65 -2.39 -0.02 1.52 16 41 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.16 2.39 6.28 -2.91 -0.02 2.37 16 45 H 0.13 3.87 7.64 -2.91 -0.02 3.84 16 Total: -1.00 -76.02 379.18 2.07 -73.95 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.44 Total: 23.25 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.96 Total: -1.54 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -6.23 Total: -105.43 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.12 Total: -34.48 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -76.02 2.07 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547275191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.214 kcal (2) G-P(sol) polarization free energy of solvation -76.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds