Wall clock time and date at job start Wed Apr 1 2020 03:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47350 * 2 1 4 4 H 1.08992 * 109.46784 * 305.64324 * 3 2 1 5 5 C 1.50697 * 109.46904 * 185.63947 * 3 2 1 6 6 H 1.07993 * 120.00605 * 239.99576 * 5 3 2 7 7 C 1.37885 * 119.99607 * 60.00335 * 5 3 2 8 8 N 1.31512 * 119.99959 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99515 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47532 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46904 * 120.00356 * 9 7 5 12 12 H 1.48503 * 109.47296 * 239.99642 * 9 7 5 13 13 N 1.46900 * 109.47072 * 65.64536 * 3 2 1 14 14 C 1.46903 * 111.00090 * 205.21808 * 13 3 2 15 15 C 1.50693 * 109.47207 * 185.19783 * 14 13 3 16 16 N 1.32433 * 118.53399 * 90.00091 * 15 14 13 17 17 C 1.32321 * 121.53608 * 179.97438 * 16 15 14 18 18 O 1.35275 * 120.87635 * 179.97438 * 17 16 15 19 19 C 1.41586 * 118.24610 * 359.97438 * 17 16 15 20 20 C 1.40100 * 121.87747 * 180.02562 * 19 17 16 21 21 C 1.36068 * 119.86480 * 179.97438 * 20 19 17 22 22 C 1.40461 * 120.77756 * 0.02562 * 21 20 19 23 23 C 1.47883 * 119.71966 * 179.97438 * 22 21 20 24 24 O 1.21449 * 119.99663 * 180.02562 * 23 22 21 25 25 O 1.34692 * 120.00047 * 0.02562 * 23 22 21 26 26 C 1.45202 * 117.00136 * 180.02562 * 25 23 22 27 27 C 1.38600 * 120.55660 * 359.97438 * 22 21 20 28 28 C 1.40120 * 119.36305 * 0.02562 * 27 22 21 29 29 N 1.31108 * 118.53832 * 269.72611 * 15 14 13 30 30 H 1.09001 * 109.46842 * 294.41334 * 1 2 3 31 31 H 1.08999 * 109.46925 * 54.40958 * 1 2 3 32 32 H 1.09003 * 109.47335 * 174.41582 * 1 2 3 33 33 H 1.08998 * 109.46909 * 239.99372 * 2 1 3 34 34 H 1.09001 * 109.46998 * 120.00129 * 2 1 3 35 35 H 0.97007 * 119.99331 * 180.02562 * 8 7 5 36 36 H 1.00903 * 110.99626 * 329.16748 * 13 3 2 37 37 H 1.08999 * 109.46571 * 305.19832 * 14 13 3 38 38 H 1.09001 * 109.47269 * 65.19195 * 14 13 3 39 39 H 0.96703 * 114.00400 * 89.99714 * 18 17 16 40 40 H 1.08000 * 120.06881 * 359.95527 * 20 19 17 41 41 H 1.07996 * 119.60882 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47415 * 59.99324 * 26 25 23 43 43 H 1.08996 * 109.47241 * 180.02562 * 26 25 23 44 44 H 1.09007 * 109.46295 * 299.99738 * 26 25 23 45 45 H 1.07996 * 120.31979 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4447 -0.1396 6 1 4.1541 1.8863 0.6316 7 6 4.1302 0.8828 -1.2523 8 7 3.3831 0.3447 -2.1913 9 14 5.9901 0.8862 -1.4256 10 1 6.5965 1.5466 -0.2419 11 1 6.4812 -0.5123 -1.5173 12 1 6.3713 1.6262 -2.6554 13 7 1.6649 2.0945 1.2617 14 6 1.5793 3.5517 1.0962 15 6 1.3189 4.1948 2.4339 16 7 2.3555 4.5526 3.1763 17 6 2.1954 5.1222 4.3599 18 8 3.2640 5.4820 5.1074 19 6 0.8763 5.3452 4.8232 20 6 0.6190 5.9429 6.0640 21 6 -0.6653 6.1383 6.4687 22 6 -1.7423 5.7468 5.6564 23 6 -3.1289 5.9697 6.1196 24 8 -4.0638 5.6327 5.4216 25 8 -3.3548 6.5465 7.3157 26 6 -4.7408 6.7336 7.7060 27 6 -1.5164 5.1533 4.4245 28 6 -0.1995 4.9452 3.9932 29 7 0.0762 4.3801 2.8085 30 1 -0.3633 0.4248 0.9358 31 1 -0.3633 0.5981 -0.8357 32 1 -0.3634 -1.0228 -0.1000 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.7980 -0.0509 -2.9738 36 1 0.7987 1.7197 1.6188 37 1 2.5183 3.9268 0.6893 38 1 0.7652 3.7925 0.4126 39 1 3.5747 6.3826 4.9416 40 1 1.4384 6.2478 6.6980 41 1 -0.8588 6.5990 7.4261 42 1 -5.2402 5.7657 7.7485 43 1 -4.7813 7.2072 8.6868 44 1 -5.2414 7.3689 6.9752 45 1 -2.3473 4.8541 3.8028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563365205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:26 Heat of formation + Delta-G solvation = -75.390200 kcal Electronic energy + Delta-G solvation = -29145.442297 eV Core-core repulsion = 24934.804736 eV Total energy + Delta-G solvation = -4210.637560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.73296 -41.56334 -39.08653 -39.03911 -37.90984 -37.58617 -34.62393 -34.44047 -33.36878 -32.64474 -31.27752 -29.15939 -28.71828 -27.13646 -26.37784 -24.70850 -23.81731 -23.49947 -22.58039 -21.51026 -20.22455 -19.92005 -19.07433 -18.39273 -18.36567 -17.71030 -17.51467 -17.28953 -16.88339 -16.41365 -16.13342 -15.81115 -15.45785 -15.26686 -15.06092 -14.90627 -14.49126 -14.38250 -14.10114 -13.99303 -13.78869 -13.54058 -13.28740 -13.10741 -13.04935 -12.90211 -12.82168 -12.73295 -12.50106 -12.02510 -11.97663 -11.88573 -11.86630 -11.84125 -11.55313 -11.43062 -11.06067 -10.57975 -10.47947 -10.42361 -9.53875 -9.12341 -8.05617 -6.16789 -1.22256 -0.77601 0.44725 1.04113 1.41794 1.43967 1.44098 1.56770 1.87032 2.11538 2.46043 2.64883 2.76570 3.05940 3.19983 3.36333 3.48039 3.65408 3.76731 3.83102 4.02773 4.13741 4.29929 4.35298 4.37633 4.46493 4.51976 4.55367 4.65039 4.67614 4.73293 4.77512 4.94717 4.96363 5.07542 5.08818 5.17207 5.21817 5.33120 5.36418 5.55188 5.75306 5.81068 5.86562 6.31014 6.40758 6.44632 6.49562 6.83375 6.94887 6.95755 7.51391 8.98155 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002375 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.395121 B =11787.298878 C =13203.287593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.228 3.772 4 H -0.021 1.021 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.918 5.918 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.678 5.678 14 C 0.137 3.863 15 C 0.361 3.639 16 N -0.547 5.547 17 C 0.412 3.588 18 O -0.463 6.463 19 C -0.163 4.163 20 C -0.054 4.054 21 C -0.073 4.073 22 C -0.078 4.078 23 C 0.513 3.487 24 O -0.527 6.527 25 O -0.345 6.345 26 C 0.028 3.972 27 C -0.042 4.042 28 C 0.141 3.859 29 N -0.521 5.521 30 H 0.051 0.949 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.327 0.673 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.436 0.564 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.063 0.937 43 H 0.140 0.860 44 H 0.064 0.936 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 17.515 23.127 31.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C 0.120 3.880 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.311 5.311 14 C 0.005 3.995 15 C 0.092 3.908 16 N -0.273 5.273 17 C 0.210 3.790 18 O -0.275 6.275 19 C -0.169 4.169 20 C -0.074 4.074 21 C -0.090 4.090 22 C -0.083 4.083 23 C 0.358 3.642 24 O -0.418 6.418 25 O -0.261 6.261 26 C -0.065 4.065 27 C -0.061 4.061 28 C 0.015 3.985 29 N -0.238 5.238 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.301 0.699 40 H 0.203 0.797 41 H 0.201 0.799 42 H 0.081 0.919 43 H 0.158 0.842 44 H 0.083 0.917 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.860 16.422 22.358 29.791 hybrid contribution -0.105 0.432 -0.737 0.860 sum -10.965 16.854 21.621 29.526 Atomic orbital electron populations 1.21749 0.96347 1.01217 1.00351 1.21594 0.94124 0.98732 1.01375 1.18979 0.94399 0.90715 0.83910 1.00375 1.21447 0.92506 1.36656 1.04180 0.93280 1.25662 1.02285 0.95289 0.95535 1.70001 1.36113 1.39868 1.09877 0.85532 0.80801 0.77654 0.77777 1.19724 1.20629 1.20544 1.60537 1.36909 1.01506 1.32139 1.20471 1.01458 0.89367 0.88155 1.22722 0.82510 0.90207 0.95331 1.67746 1.37744 1.14393 1.07398 1.19839 0.86198 0.87620 0.85375 1.84619 1.44884 1.39628 1.58334 1.19948 0.93270 1.04202 0.99460 1.21214 0.98955 0.94789 0.92469 1.21449 0.90093 0.96955 1.00538 1.19224 0.91323 1.02506 0.95207 1.21147 0.89209 0.74028 0.79824 1.90870 1.45845 1.48692 1.56368 1.86513 1.33447 1.71988 1.34118 1.23675 0.77143 1.02785 1.02905 1.21059 0.94753 0.95195 0.95100 1.18912 0.94080 0.95442 0.90104 1.68588 1.22427 1.16115 1.16624 0.93050 0.94118 0.92272 0.90805 0.94673 0.93000 0.85455 0.89723 0.93087 0.69914 0.79740 0.79912 0.91865 0.84181 0.91736 0.83595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 9.65 71.98 0.69 -4.82 16 2 C -0.12 -5.85 5.36 30.60 0.16 -5.68 16 3 C 0.23 11.82 2.02 44.17 0.09 11.91 16 4 H -0.02 -1.20 7.85 -2.39 -0.02 -1.22 16 5 C -0.51 -29.14 8.55 25.60 0.22 -28.92 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.59 5.29 84.66 0.45 1.04 16 8 N -0.92 -53.34 11.29 21.45 0.24 -53.09 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.68 -30.97 6.26 -499.48 -3.12 -34.10 16 14 C 0.14 5.67 5.85 85.55 0.50 6.17 16 15 C 0.36 13.37 7.18 138.76 1.00 14.37 16 16 N -0.55 -19.11 10.30 -299.82 -3.09 -22.20 16 17 C 0.41 10.57 7.89 85.45 0.67 11.24 16 18 O -0.46 -8.17 12.91 -85.60 -1.11 -9.28 16 19 C -0.16 -3.66 5.76 -21.16 -0.12 -3.79 16 20 C -0.05 -0.70 9.58 22.22 0.21 -0.49 16 21 C -0.07 -0.85 9.52 22.31 0.21 -0.64 16 22 C -0.08 -1.43 5.87 -20.10 -0.12 -1.55 16 23 C 0.51 9.73 7.90 70.38 0.56 10.29 16 24 O -0.53 -13.42 16.09 20.00 0.32 -13.09 16 25 O -0.35 -4.54 9.77 -56.01 -0.55 -5.09 16 26 C 0.03 0.22 10.56 113.37 1.20 1.42 16 27 C -0.04 -1.01 9.58 22.81 0.22 -0.79 16 28 C 0.14 3.93 6.61 40.09 0.26 4.19 16 29 N -0.52 -17.83 10.32 -181.81 -1.88 -19.71 16 30 H 0.05 1.86 6.65 -2.39 -0.02 1.84 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 4.04 5.94 -2.39 -0.01 4.03 16 34 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 36 H 0.33 14.00 6.64 -89.69 -0.60 13.40 16 37 H 0.08 3.79 7.92 -2.39 -0.02 3.77 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.44 2.47 9.06 -74.06 -0.67 1.80 16 40 H 0.19 0.99 7.70 -2.91 -0.02 0.97 16 41 H 0.18 0.89 7.57 -2.91 -0.02 0.86 16 42 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 43 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 44 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 45 H 0.15 3.76 7.61 -2.91 -0.02 3.74 16 Total: -1.00 -76.41 385.01 -1.15 -77.56 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -0.21 Total: 17.84 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.21 Total: 13.95 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -7.85 Total: -129.10 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.33 Total: -27.46 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -76.41 -1.15 -77.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.166 kcal (2) G-P(sol) polarization free energy of solvation -76.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds