Wall clock time and date at job start Wed Apr 1 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47356 * 2 1 4 4 C 1.50696 * 109.47307 * 239.99989 * 2 1 3 5 5 H 1.08005 * 120.00293 * 239.99786 * 4 2 1 6 6 C 1.37883 * 120.00207 * 59.99872 * 4 2 1 7 7 N 1.31518 * 119.99681 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47244 * 60.00296 * 8 6 4 10 10 H 1.48501 * 109.46737 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47385 * 300.00035 * 8 6 4 12 12 C 1.53002 * 109.47084 * 120.00011 * 2 1 3 13 13 N 1.46497 * 109.47326 * 299.99880 * 12 2 1 14 14 C 1.34775 * 120.00228 * 180.02562 * 13 12 2 15 15 O 1.21273 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99803 * 180.02562 * 14 13 12 17 17 N 1.46496 * 109.46828 * 179.97438 * 16 14 13 18 18 N 1.40266 * 126.57732 * 270.02210 * 17 16 14 19 19 C 1.30154 * 107.75263 * 179.97438 * 18 17 16 20 20 C 1.47901 * 125.46862 * 179.73173 * 19 18 17 21 21 C 1.39541 * 120.13867 * 359.73026 * 20 19 18 22 22 C 1.37966 * 119.85539 * 179.74325 * 21 20 19 23 23 C 1.38342 * 120.14453 * 0.53103 * 22 21 20 24 24 C 1.38354 * 120.28287 * 359.74193 * 23 22 21 25 25 C 1.37973 * 120.14191 * 359.97438 * 24 23 22 26 26 O 1.35093 * 109.07167 * 0.02562 * 19 18 17 27 27 C 1.34324 * 108.85923 * 359.97438 * 26 19 18 28 28 O 1.21687 * 126.26400 * 179.97438 * 27 26 19 29 29 H 1.08997 * 109.47403 * 300.00262 * 1 2 3 30 30 H 1.09001 * 109.47026 * 59.99899 * 1 2 3 31 31 H 1.08999 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47220 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46709 * 300.00301 * 3 2 1 34 34 H 1.09000 * 109.46999 * 60.00061 * 3 2 1 35 35 H 0.96992 * 120.00097 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46738 * 180.02562 * 12 2 1 37 37 H 1.08999 * 109.47216 * 59.99929 * 12 2 1 38 38 H 0.97006 * 119.99739 * 359.97438 * 13 12 2 39 39 H 1.08997 * 109.47543 * 59.99848 * 16 14 13 40 40 H 1.08999 * 109.47009 * 299.99789 * 16 14 13 41 41 H 1.07999 * 120.06852 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.92596 * 180.25397 * 22 21 20 43 43 H 1.07997 * 119.86232 * 179.76743 * 23 22 21 44 44 H 1.08000 * 119.92780 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.07102 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0078 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5748 -1.4769 3.7808 16 6 1.3748 0.2193 4.9000 17 7 1.8632 -0.4712 6.0961 18 7 1.2226 -1.5162 6.7781 19 6 1.9763 -1.8545 7.7838 20 6 1.6697 -2.9159 8.7672 21 6 0.4855 -3.6466 8.6631 22 6 0.2079 -4.6390 9.5805 23 6 1.0953 -4.9028 10.6085 24 6 2.2685 -4.1780 10.7206 25 6 2.5607 -3.1870 9.8063 26 8 3.0807 -1.0764 7.7893 27 6 3.0162 -0.2240 6.7532 28 8 3.8451 0.6176 6.4609 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.7094 1.1618 -3.4844 36 1 3.1299 -0.7208 1.2494 37 1 1.6766 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.2848 0.2186 4.9001 40 1 1.7374 1.2472 4.8999 41 1 -0.2103 -3.4384 7.8638 42 1 -0.7064 -5.2080 9.4985 43 1 0.8716 -5.6781 11.3263 44 1 2.9574 -4.3891 11.5251 45 1 3.4770 -2.6222 9.8946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590915918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:02 Heat of formation + Delta-G solvation = -10.126354 kcal Electronic energy + Delta-G solvation = -29178.915608 eV Core-core repulsion = 24971.108100 eV Total energy + Delta-G solvation = -4207.807508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.55617 -39.67489 -39.42139 -38.02051 -36.68930 -36.03820 -33.43110 -33.28135 -31.61059 -31.31912 -30.70781 -28.25580 -25.76680 -25.65457 -25.05746 -24.42787 -23.52675 -22.42862 -21.92125 -20.44889 -18.94629 -18.42322 -18.09073 -17.31684 -16.92401 -16.65596 -16.45978 -15.84501 -15.75234 -15.27918 -14.94213 -14.77193 -14.63265 -14.29514 -13.94331 -13.91248 -13.57303 -13.24249 -12.98618 -12.93486 -12.43853 -12.30532 -12.23502 -12.21588 -11.94872 -11.57653 -11.41286 -11.22634 -11.05257 -10.87543 -10.75580 -10.42615 -10.27207 -10.17319 -9.68072 -9.68035 -9.48621 -9.34450 -8.84941 -8.71574 -8.55591 -8.37679 -6.04749 -4.14876 0.17508 0.88076 1.32606 1.72310 2.08421 2.21749 2.79364 3.28851 3.30001 3.33113 3.36316 3.53718 3.78113 4.35632 4.37955 4.43546 4.44941 4.65537 4.85980 4.87760 4.91751 4.94874 5.04812 5.17936 5.22034 5.33348 5.51936 5.59952 5.86533 5.90901 5.97244 6.15524 6.26676 6.35347 6.45437 6.69303 6.77558 6.86723 6.91684 6.97530 7.16191 7.30332 7.33864 7.51737 7.66280 7.87537 7.97522 8.09758 8.33980 8.49787 8.85141 9.50949 10.96645 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.002012 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.461662 B =13910.163854 C =14528.826813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.709 5.709 14 C 0.487 3.513 15 O -0.538 6.538 16 C 0.135 3.865 17 N -0.435 5.435 18 N -0.243 5.243 19 C 0.283 3.717 20 C -0.031 4.031 21 C -0.065 4.065 22 C -0.121 4.121 23 C -0.093 4.093 24 C -0.122 4.122 25 C -0.076 4.076 26 O -0.266 6.266 27 C 0.615 3.385 28 O -0.478 6.478 29 H 0.006 0.994 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.006 0.994 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.400 0.600 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 -5.715 26.404 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.270 3.730 15 O -0.415 6.415 16 C 0.012 3.988 17 N -0.265 5.265 18 N -0.072 5.072 19 C 0.060 3.940 20 C -0.033 4.033 21 C -0.085 4.085 22 C -0.139 4.139 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.096 4.096 26 O -0.163 6.163 27 C 0.367 3.633 28 O -0.358 6.358 29 H 0.025 0.975 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.236 0.764 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.157 -5.858 25.693 26.678 hybrid contribution 0.762 0.126 -0.804 1.115 sum -3.394 -5.732 24.890 25.766 Atomic orbital electron populations 1.21833 0.97656 0.99224 1.00141 1.18369 0.92867 0.92814 0.90434 1.21841 0.98696 0.98245 1.00142 1.20925 1.31608 1.12150 0.89845 0.92513 1.24880 0.94838 0.94932 0.98862 1.69785 1.36573 1.22659 1.23390 0.86618 0.79260 0.79772 0.82124 1.20281 1.21303 1.20278 1.21785 0.98302 0.95823 0.83040 1.46228 1.52445 1.31793 1.05612 1.20649 0.81722 0.85525 0.85103 1.90720 1.37923 1.26264 1.86616 1.21482 1.02353 0.95795 0.79211 1.49254 1.18727 1.31811 1.26735 1.77423 1.20176 1.04140 1.05440 1.23799 0.81910 0.93398 0.94900 1.17296 0.97521 0.94516 0.93946 1.21234 0.94777 0.93688 0.98805 1.21143 1.00321 0.97703 0.94752 1.21452 0.93728 0.98530 0.97497 1.21127 0.97663 0.95885 0.99331 1.21301 0.98612 0.97040 0.92673 1.85155 1.41011 1.43538 1.46593 1.19144 0.83412 0.82029 0.78727 1.91221 1.42944 1.33271 1.68328 0.97470 0.89522 0.95401 0.95373 0.89511 0.97458 0.92908 0.92556 0.92528 0.76440 0.85176 0.85179 0.84167 0.84728 0.85217 0.84892 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 2 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.51 -13.17 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.34 9.35 55.43 0.52 -22.82 16 8 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.13 2.78 4.50 -4.04 -0.02 2.77 16 13 N -0.71 -12.06 4.96 -60.29 -0.30 -12.35 16 14 C 0.49 8.31 7.90 -10.98 -0.09 8.22 16 15 O -0.54 -11.62 16.43 5.56 0.09 -11.52 16 16 C 0.14 1.68 6.89 -5.19 -0.04 1.65 16 17 N -0.43 -6.36 3.13 -66.46 -0.21 -6.57 16 18 N -0.24 -3.28 12.16 31.97 0.39 -2.89 16 19 C 0.28 3.48 7.94 -14.31 -0.11 3.37 16 20 C -0.03 -0.28 5.87 -104.97 -0.62 -0.90 16 21 C -0.07 -0.50 9.68 -39.20 -0.38 -0.88 16 22 C -0.12 -0.69 10.03 -39.64 -0.40 -1.08 16 23 C -0.09 -0.46 10.04 -39.50 -0.40 -0.86 16 24 C -0.12 -0.67 10.03 -39.64 -0.40 -1.07 16 25 C -0.08 -0.57 9.71 -39.20 -0.38 -0.95 16 26 O -0.27 -3.75 10.43 -20.77 -0.22 -3.97 16 27 C 0.62 9.96 9.24 54.15 0.50 10.46 16 28 O -0.48 -8.90 17.91 -19.00 -0.34 -9.24 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 34 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.40 5.82 6.16 -40.82 -0.25 5.56 16 39 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.13 1.32 8.12 -51.93 -0.42 0.90 16 41 H 0.14 1.04 7.82 -52.49 -0.41 0.63 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 44 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 45 H 0.14 0.92 7.89 -52.49 -0.41 0.51 16 LS Contribution 383.68 15.07 5.78 5.78 Total: -1.00 -33.09 383.68 -7.24 -40.32 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.76 Total: 2.64 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.17 Total: 4.95 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.40 Total: -44.63 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.47 Total: -24.74 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.09 -7.24 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590915918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.196 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds