Wall clock time and date at job start Wed Apr 1 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47356 * 2 1 4 4 C 1.50696 * 109.47307 * 239.99989 * 2 1 3 5 5 H 1.08005 * 120.00293 * 239.99786 * 4 2 1 6 6 C 1.37883 * 120.00207 * 59.99872 * 4 2 1 7 7 N 1.31518 * 119.99681 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47244 * 60.00296 * 8 6 4 10 10 H 1.48501 * 109.46737 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47385 * 300.00035 * 8 6 4 12 12 C 1.53002 * 109.47084 * 120.00011 * 2 1 3 13 13 N 1.46497 * 109.47326 * 299.99880 * 12 2 1 14 14 C 1.34775 * 120.00228 * 180.02562 * 13 12 2 15 15 O 1.21273 * 120.00024 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99803 * 180.02562 * 14 13 12 17 17 N 1.46496 * 109.46828 * 179.97438 * 16 14 13 18 18 N 1.40266 * 126.57732 * 270.02210 * 17 16 14 19 19 C 1.30154 * 107.75263 * 179.97438 * 18 17 16 20 20 C 1.47901 * 125.46862 * 179.73173 * 19 18 17 21 21 C 1.39541 * 120.13867 * 359.73026 * 20 19 18 22 22 C 1.37966 * 119.85539 * 179.74325 * 21 20 19 23 23 C 1.38342 * 120.14453 * 0.53103 * 22 21 20 24 24 C 1.38354 * 120.28287 * 359.74193 * 23 22 21 25 25 C 1.37973 * 120.14191 * 359.97438 * 24 23 22 26 26 O 1.35093 * 109.07167 * 0.02562 * 19 18 17 27 27 C 1.34324 * 108.85923 * 359.97438 * 26 19 18 28 28 O 1.21687 * 126.26400 * 179.97438 * 27 26 19 29 29 H 1.08997 * 109.47403 * 300.00262 * 1 2 3 30 30 H 1.09001 * 109.47026 * 59.99899 * 1 2 3 31 31 H 1.08999 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47220 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46709 * 300.00301 * 3 2 1 34 34 H 1.09000 * 109.46999 * 60.00061 * 3 2 1 35 35 H 0.96992 * 120.00097 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46738 * 180.02562 * 12 2 1 37 37 H 1.08999 * 109.47216 * 59.99929 * 12 2 1 38 38 H 0.97006 * 119.99739 * 359.97438 * 13 12 2 39 39 H 1.08997 * 109.47543 * 59.99848 * 16 14 13 40 40 H 1.08999 * 109.47009 * 299.99789 * 16 14 13 41 41 H 1.07999 * 120.06852 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.92596 * 180.25397 * 22 21 20 43 43 H 1.07997 * 119.86232 * 179.76743 * 23 22 21 44 44 H 1.08000 * 119.92780 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.07102 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0078 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0082 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5748 -1.4769 3.7808 16 6 1.3748 0.2193 4.9000 17 7 1.8632 -0.4712 6.0961 18 7 1.2226 -1.5162 6.7781 19 6 1.9763 -1.8545 7.7838 20 6 1.6697 -2.9159 8.7672 21 6 0.4855 -3.6466 8.6631 22 6 0.2079 -4.6390 9.5805 23 6 1.0953 -4.9028 10.6085 24 6 2.2685 -4.1780 10.7206 25 6 2.5607 -3.1870 9.8063 26 8 3.0807 -1.0764 7.7893 27 6 3.0162 -0.2240 6.7532 28 8 3.8451 0.6176 6.4609 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.7094 1.1618 -3.4844 36 1 3.1299 -0.7208 1.2494 37 1 1.6766 -1.7489 1.2493 38 1 0.9942 0.7582 2.3564 39 1 0.2848 0.2186 4.9001 40 1 1.7374 1.2472 4.8999 41 1 -0.2103 -3.4384 7.8638 42 1 -0.7064 -5.2080 9.4985 43 1 0.8716 -5.6781 11.3263 44 1 2.9574 -4.3891 11.5251 45 1 3.4770 -2.6222 9.8946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590915918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:01 Heat of formation + Delta-G solvation = -32.430165 kcal Electronic energy + Delta-G solvation = -29179.882774 eV Core-core repulsion = 24971.108100 eV Total energy + Delta-G solvation = -4208.774674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.63911 -40.96160 -40.14162 -39.22543 -38.28658 -37.29366 -35.10896 -34.17315 -32.92197 -32.09644 -31.74846 -29.35833 -27.55784 -27.43646 -26.65936 -25.44892 -24.42424 -23.18229 -22.73482 -21.79385 -20.67058 -19.43524 -19.26096 -18.32697 -18.18053 -17.79414 -17.64415 -17.34381 -16.75400 -16.53947 -16.46634 -15.99256 -15.67847 -15.16128 -14.91612 -14.86906 -14.76701 -14.73244 -14.40103 -14.03413 -13.76416 -13.49778 -13.42560 -13.35276 -13.16100 -13.09218 -12.68632 -12.64706 -12.43920 -12.27935 -12.25063 -12.14724 -12.02399 -11.49634 -11.45072 -11.21501 -10.75079 -10.63089 -10.40943 -10.06572 -9.96717 -9.58534 -8.03558 -6.18971 -0.52025 0.24625 0.40783 0.81319 1.00243 1.28220 1.42476 1.43960 1.45854 1.50334 2.19373 2.46576 2.79008 2.81291 3.19891 3.46864 3.61886 3.90559 3.94396 4.02380 4.07721 4.18583 4.28219 4.38361 4.45595 4.47221 4.51565 4.59708 4.70436 4.85222 4.96027 5.05775 5.07794 5.09572 5.19322 5.30237 5.33039 5.44268 5.52274 5.52918 5.66360 5.67579 5.91566 6.03785 6.15826 6.20304 6.20717 6.42530 6.51142 6.84276 7.14437 7.48327 8.94943 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.002012 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.461662 B =13910.163854 C =14528.826813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.896 5.896 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.149 3.851 13 N -0.699 5.699 14 C 0.487 3.513 15 O -0.588 6.588 16 C 0.138 3.862 17 N -0.436 5.436 18 N -0.262 5.262 19 C 0.293 3.707 20 C -0.061 4.061 21 C -0.073 4.073 22 C -0.122 4.122 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.084 4.084 26 O -0.269 6.269 27 C 0.607 3.393 28 O -0.512 6.512 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.014 0.986 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.261 0.739 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.416 0.584 39 H 0.174 0.826 40 H 0.159 0.841 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 -6.422 28.707 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.171 4.171 7 N -0.535 5.535 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.025 3.975 13 N -0.351 5.351 14 C 0.272 3.728 15 O -0.468 6.468 16 C 0.016 3.984 17 N -0.266 5.266 18 N -0.090 5.090 19 C 0.070 3.930 20 C -0.063 4.063 21 C -0.093 4.093 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.139 4.139 25 C -0.105 4.105 26 O -0.166 6.166 27 C 0.359 3.641 28 O -0.395 6.395 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.254 0.746 39 H 0.191 0.809 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.180 0.820 44 H 0.177 0.823 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.659 -6.552 28.005 29.312 hybrid contribution 1.199 0.203 -1.376 1.836 sum -4.460 -6.349 26.629 27.736 Atomic orbital electron populations 1.21668 0.96627 0.98803 1.00752 1.18372 0.93615 0.93006 0.89977 1.21692 0.97789 0.97808 1.00723 1.21221 1.31809 1.12176 0.91668 0.94046 1.25432 0.95184 0.95641 1.00876 1.69884 1.36814 1.23084 1.23697 0.85847 0.78513 0.78877 0.79737 1.20262 1.20673 1.20534 1.21294 0.96836 0.95205 0.84125 1.45977 1.52487 1.31982 1.04688 1.21449 0.80455 0.84822 0.86077 1.90702 1.40113 1.28675 1.87355 1.21767 1.04696 0.95852 0.76101 1.49420 1.18261 1.32019 1.26889 1.77450 1.20537 1.04695 1.06290 1.24584 0.80648 0.92907 0.94815 1.17508 0.99172 0.95035 0.94591 1.21353 0.94210 0.94228 0.99466 1.21481 1.01384 0.96935 0.94144 1.21896 0.92721 0.98239 0.97216 1.21475 0.98388 0.94837 0.99202 1.21458 0.98416 0.97820 0.92764 1.85126 1.41876 1.43488 1.46073 1.19302 0.83586 0.82060 0.79167 1.91176 1.44090 1.34809 1.69468 0.93783 0.91868 0.96286 0.96660 0.91777 0.93909 0.92964 0.94790 0.94187 0.74613 0.80852 0.82406 0.84496 0.82286 0.82016 0.82315 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -28.06 8.01 25.60 0.21 -27.86 16 5 H 0.04 2.25 7.74 -2.91 -0.02 2.23 16 6 C 0.03 1.51 5.15 84.66 0.44 1.95 16 7 N -0.90 -47.36 9.35 21.45 0.20 -47.16 16 8 Si 0.94 42.78 29.54 68.60 2.03 44.80 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 C 0.15 6.32 4.50 86.38 0.39 6.71 16 13 N -0.70 -22.86 4.96 -463.06 -2.30 -25.16 16 14 C 0.49 16.20 7.90 87.66 0.69 16.89 16 15 O -0.59 -25.78 16.43 -3.01 -0.05 -25.83 16 16 C 0.14 3.16 6.89 85.64 0.59 3.75 16 17 N -0.44 -12.51 3.13 -594.43 -1.86 -14.37 16 18 N -0.26 -6.97 12.16 -167.01 -2.03 -9.00 16 19 C 0.29 7.24 7.94 87.50 0.69 7.93 16 20 C -0.06 -1.10 5.87 -20.09 -0.12 -1.22 16 21 C -0.07 -1.04 9.68 22.52 0.22 -0.82 16 22 C -0.12 -1.04 10.03 22.23 0.22 -0.82 16 23 C -0.08 -0.52 10.04 22.32 0.22 -0.29 16 24 C -0.12 -1.00 10.03 22.23 0.22 -0.78 16 25 C -0.08 -1.18 9.71 22.52 0.22 -0.96 16 26 O -0.27 -7.75 10.43 12.50 0.13 -7.62 16 27 C 0.61 19.90 9.24 129.76 1.20 21.10 16 28 O -0.51 -19.47 17.91 18.83 0.34 -19.14 16 29 H 0.04 1.51 6.86 -2.39 -0.02 1.49 16 30 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 34 H 0.04 1.51 6.86 -2.39 -0.02 1.50 16 35 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.03 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.42 10.90 6.16 -92.70 -0.57 10.33 16 39 H 0.17 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.16 2.78 8.12 -2.39 -0.02 2.76 16 41 H 0.14 1.96 7.82 -2.91 -0.02 1.94 16 42 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 43 H 0.16 0.02 8.06 -2.91 -0.02 -0.01 16 44 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 45 H 0.14 1.80 7.89 -2.91 -0.02 1.78 16 Total: -1.00 -74.78 383.68 3.25 -71.52 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.46 Total: 13.38 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.33 Total: 18.57 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.98 Total: -95.69 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: 0.42 Total: -52.58 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -74.78 3.25 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590915918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.093 kcal (2) G-P(sol) polarization free energy of solvation -74.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds