Wall clock time and date at job start Wed Apr 1 2020 03:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 H 1.08997 * 109.47205 * 55.00265 * 3 2 1 5 5 C 1.50695 * 109.46977 * 175.00128 * 3 2 1 6 6 H 1.07999 * 120.00235 * 120.00496 * 5 3 2 7 7 C 1.37880 * 120.00251 * 299.99661 * 5 3 2 8 8 N 1.31518 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00285 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47041 * 90.00434 * 9 7 5 11 11 H 1.48499 * 109.47030 * 210.00341 * 9 7 5 12 12 H 1.48502 * 109.47070 * 329.99824 * 9 7 5 13 13 N 1.46497 * 109.47163 * 295.00182 * 3 2 1 14 14 C 1.34776 * 120.00330 * 85.00145 * 13 3 2 15 15 O 1.21359 * 119.99919 * 359.97438 * 14 13 3 16 16 C 1.49357 * 120.00170 * 180.02562 * 14 13 3 17 17 O 1.21368 * 120.00142 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00170 * 179.97438 * 16 14 13 19 19 C 1.39269 * 120.00288 * 175.42573 * 18 16 14 20 20 C 1.39198 * 119.86402 * 214.88544 * 19 18 16 21 21 C 1.37786 * 120.10778 * 179.77728 * 20 19 18 22 22 C 1.39438 * 119.67405 * 0.53044 * 21 20 19 23 23 C 1.39899 * 120.14128 * 359.66992 * 22 21 20 24 24 C 1.37482 * 119.92639 * 0.09331 * 23 22 21 25 25 C 1.50578 * 119.19421 * 180.13585 * 23 22 21 26 26 C 1.52695 * 109.90235 * 325.95122 * 25 23 22 27 27 N 1.46034 * 111.03348 * 51.12848 * 26 25 23 28 28 C 1.34801 * 121.21701 * 322.29667 * 27 26 25 29 29 O 1.21584 * 120.42732 * 182.71564 * 28 27 26 30 30 H 1.08997 * 109.47260 * 299.99591 * 1 2 3 31 31 H 1.08996 * 109.47601 * 60.00264 * 1 2 3 32 32 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46946 * 240.00080 * 2 1 3 34 34 H 1.09004 * 109.47110 * 120.00103 * 2 1 3 35 35 H 0.97000 * 120.00425 * 179.97438 * 8 7 5 36 36 H 0.97006 * 119.99781 * 265.27594 * 13 3 2 37 37 H 0.97005 * 119.99956 * 355.42116 * 18 16 14 38 38 H 1.08003 * 119.95021 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.16396 * 180.25035 * 21 20 19 40 40 H 1.07994 * 120.05868 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.39819 * 86.08413 * 25 23 22 42 42 H 1.09004 * 109.39751 * 205.82815 * 25 23 22 43 43 H 1.08997 * 109.16923 * 290.73204 * 26 25 23 44 44 H 1.08994 * 109.12233 * 171.49975 * 26 25 23 45 45 H 0.96999 * 119.39217 * 142.32095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.4415 2.1142 2.0849 11 1 6.4395 -0.3097 2.1549 12 1 6.6135 0.8417 0.0278 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3402 2.6319 -0.4338 16 6 0.0397 3.3317 -2.6433 17 8 0.8148 3.3638 -3.5767 18 7 -1.1778 3.8981 -2.7587 19 6 -1.5117 4.6025 -3.9128 20 6 -2.3305 5.7249 -3.8273 21 6 -2.6602 6.4282 -4.9653 22 6 -2.1788 6.0034 -6.2031 23 6 -1.3594 4.8727 -6.2877 24 6 -1.0297 4.1778 -5.1482 25 6 -0.8489 4.4347 -7.6349 26 6 -1.8952 4.7279 -8.7077 27 7 -2.3505 6.1133 -8.6311 28 6 -2.5191 6.7287 -7.4436 29 8 -2.9456 7.8662 -7.3946 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8292 -0.0617 2.9495 36 1 2.2703 2.1197 -1.9991 37 1 -1.8216 3.8152 -2.0378 38 1 -2.7048 6.0474 -2.8669 39 1 -3.2922 7.3015 -4.8996 40 1 -0.3976 3.3044 -5.2111 41 1 0.0690 4.9746 -7.8673 42 1 -0.6426 3.3646 -7.6135 43 1 -2.7475 4.0630 -8.5676 44 1 -1.4591 4.5484 -9.6903 45 1 -2.5353 6.5997 -9.4497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595006040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:18 Heat of formation + Delta-G solvation = -81.669522 kcal Electronic energy + Delta-G solvation = -29452.171264 eV Core-core repulsion = 25241.261411 eV Total energy + Delta-G solvation = -4210.909852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26170 -40.44205 -38.90153 -37.87004 -36.56533 -35.53912 -34.71227 -32.51643 -32.34894 -31.07747 -30.24048 -29.39471 -27.37462 -25.43789 -24.47677 -23.53967 -22.63678 -22.11856 -20.50026 -19.81267 -19.57959 -18.68052 -17.67235 -17.50247 -17.12806 -16.48932 -15.93637 -15.90453 -15.65222 -15.31676 -15.09072 -14.74138 -14.37171 -14.24348 -14.13360 -13.75071 -13.45937 -13.40662 -13.30441 -12.93345 -12.80849 -12.45341 -12.17506 -11.94917 -11.67347 -11.53674 -11.37991 -11.25421 -11.02774 -10.92984 -10.54755 -10.41929 -10.32659 -10.23611 -9.76665 -9.51245 -9.23160 -9.20301 -9.05206 -8.62138 -8.44551 -8.12017 -6.22727 -4.32708 0.45769 1.09150 1.66296 2.46288 2.60413 2.89573 3.20299 3.27441 3.29775 3.47095 3.63426 3.91677 4.19345 4.25674 4.28478 4.37233 4.65413 4.74113 4.88518 4.94134 4.97852 5.09633 5.14365 5.19980 5.38705 5.48262 5.70278 5.82210 5.96935 6.05682 6.14090 6.24627 6.28977 6.45854 6.48089 6.64821 6.82847 6.86237 6.89610 7.03775 7.07335 7.19992 7.40589 7.56738 7.69157 7.77294 7.89245 8.01797 8.34381 8.53605 8.78374 9.34359 10.82625 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002139 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.367000 B =13085.361212 C =13516.673826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.494 3.506 15 O -0.527 6.527 16 C 0.508 3.492 17 O -0.502 6.502 18 N -0.652 5.652 19 C 0.182 3.818 20 C -0.157 4.157 21 C -0.033 4.033 22 C -0.163 4.163 23 C -0.031 4.031 24 C -0.129 4.129 25 C -0.103 4.103 26 C 0.115 3.885 27 N -0.728 5.728 28 C 0.570 3.430 29 O -0.540 6.540 30 H 0.052 0.948 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.426 0.574 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 5.774 -18.464 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.314 5.314 14 C 0.273 3.727 15 O -0.406 6.406 16 C 0.292 3.708 17 O -0.375 6.375 18 N -0.298 5.298 19 C 0.087 3.913 20 C -0.177 4.177 21 C -0.053 4.053 22 C -0.167 4.167 23 C -0.032 4.032 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.009 4.009 27 N -0.381 5.381 28 C 0.359 3.641 29 O -0.418 6.418 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.236 0.764 37 H 0.265 0.735 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.529 6.077 -17.977 22.205 hybrid contribution 0.963 0.045 -0.143 0.974 sum -10.567 6.123 -18.121 21.852 Atomic orbital electron populations 1.21856 0.98292 0.98477 1.00999 1.21970 0.92646 0.99344 1.02845 1.19038 0.94858 0.89403 0.80009 0.92689 1.21192 0.90249 1.39537 1.06633 0.91759 1.24873 0.98873 0.94548 0.95231 1.69878 1.35317 1.37325 1.09333 0.86403 0.84446 0.77717 0.78324 1.20477 1.20993 1.19729 1.46480 1.13386 1.52340 1.19216 1.19523 0.84644 0.81610 0.86949 1.90757 1.51133 1.59363 1.39322 1.21115 0.81315 0.78670 0.89732 1.90722 1.50951 1.55841 1.39962 1.43225 1.16171 1.51697 1.18734 1.17983 0.95844 0.91358 0.86161 1.20959 1.02542 0.94583 0.99636 1.20905 0.96455 0.97868 0.90043 1.19650 1.04549 0.98589 0.93868 1.19805 0.95066 0.93164 0.95180 1.21082 1.02254 1.01910 0.89688 1.20857 0.98943 1.03511 0.90684 1.21309 0.97519 0.82322 0.99789 1.45703 1.69445 1.14631 1.08355 1.18211 0.76502 0.85427 0.83977 1.90813 1.45691 1.18150 1.87180 0.92902 0.94686 0.95417 0.94626 0.87777 0.92392 0.76363 0.73545 0.84504 0.84247 0.83352 0.89130 0.88199 0.91340 0.89204 0.76032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.51 37.16 0.32 -2.52 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.34 2.24 -69.09 -0.15 6.19 16 4 H 0.06 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.54 -13.64 8.73 -34.44 -0.30 -13.94 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.58 11.29 55.43 0.63 -22.96 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.67 -13.30 5.01 -55.40 -0.28 -13.57 16 14 C 0.49 9.08 6.46 -11.63 -0.08 9.01 16 15 O -0.53 -10.56 13.62 5.49 0.07 -10.48 16 16 C 0.51 7.87 7.72 -11.63 -0.09 7.78 16 17 O -0.50 -8.28 13.88 5.48 0.08 -8.20 16 18 N -0.65 -8.14 5.30 -10.27 -0.05 -8.19 16 19 C 0.18 2.14 6.29 -83.75 -0.53 1.62 16 20 C -0.16 -1.59 9.95 -39.39 -0.39 -1.99 16 21 C -0.03 -0.35 9.63 -39.30 -0.38 -0.73 16 22 C -0.16 -1.80 5.78 -104.98 -0.61 -2.41 16 23 C -0.03 -0.31 5.68 -104.34 -0.59 -0.90 16 24 C -0.13 -1.50 8.35 -39.48 -0.33 -1.83 16 25 C -0.10 -0.69 6.04 -28.10 -0.17 -0.86 16 26 C 0.12 0.59 7.04 -4.45 -0.03 0.55 16 27 N -0.73 -5.51 5.58 -61.78 -0.34 -5.85 16 28 C 0.57 6.47 7.78 -12.40 -0.10 6.38 16 29 O -0.54 -7.91 17.45 5.29 0.09 -7.82 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.03 0.68 5.64 -51.93 -0.29 0.39 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.40 7.51 8.01 -40.82 -0.33 7.18 16 37 H 0.43 4.65 8.29 -40.82 -0.34 4.31 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.14 1.36 7.84 -52.49 -0.41 0.95 16 40 H 0.15 1.82 6.21 -52.49 -0.33 1.50 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 43 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.40 2.38 8.92 -40.82 -0.36 2.01 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -31.00 373.10 -8.54 -39.54 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.67 Total: 11.97 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -3.67 Total: 4.94 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.05 Total: -50.58 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.24 Total: -26.50 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.00 -8.54 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.133 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds