Wall clock time and date at job start Wed Apr 1 2020 03:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46929 * 2 1 4 4 H 1.08997 * 109.47205 * 55.00265 * 3 2 1 5 5 C 1.50695 * 109.46977 * 175.00128 * 3 2 1 6 6 H 1.07999 * 120.00235 * 120.00496 * 5 3 2 7 7 C 1.37880 * 120.00251 * 299.99661 * 5 3 2 8 8 N 1.31518 * 119.99774 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00285 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47041 * 90.00434 * 9 7 5 11 11 H 1.48499 * 109.47030 * 210.00341 * 9 7 5 12 12 H 1.48502 * 109.47070 * 329.99824 * 9 7 5 13 13 N 1.46497 * 109.47163 * 295.00182 * 3 2 1 14 14 C 1.34776 * 120.00330 * 85.00145 * 13 3 2 15 15 O 1.21359 * 119.99919 * 359.97438 * 14 13 3 16 16 C 1.49357 * 120.00170 * 180.02562 * 14 13 3 17 17 O 1.21368 * 120.00142 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00170 * 179.97438 * 16 14 13 19 19 C 1.39269 * 120.00288 * 175.42573 * 18 16 14 20 20 C 1.39198 * 119.86402 * 214.88544 * 19 18 16 21 21 C 1.37786 * 120.10778 * 179.77728 * 20 19 18 22 22 C 1.39438 * 119.67405 * 0.53044 * 21 20 19 23 23 C 1.39899 * 120.14128 * 359.66992 * 22 21 20 24 24 C 1.37482 * 119.92639 * 0.09331 * 23 22 21 25 25 C 1.50578 * 119.19421 * 180.13585 * 23 22 21 26 26 C 1.52695 * 109.90235 * 325.95122 * 25 23 22 27 27 N 1.46034 * 111.03348 * 51.12848 * 26 25 23 28 28 C 1.34801 * 121.21701 * 322.29667 * 27 26 25 29 29 O 1.21584 * 120.42732 * 182.71564 * 28 27 26 30 30 H 1.08997 * 109.47260 * 299.99591 * 1 2 3 31 31 H 1.08996 * 109.47601 * 60.00264 * 1 2 3 32 32 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46946 * 240.00080 * 2 1 3 34 34 H 1.09004 * 109.47110 * 120.00103 * 2 1 3 35 35 H 0.97000 * 120.00425 * 179.97438 * 8 7 5 36 36 H 0.97006 * 119.99781 * 265.27594 * 13 3 2 37 37 H 0.97005 * 119.99956 * 355.42116 * 18 16 14 38 38 H 1.08003 * 119.95021 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.16396 * 180.25035 * 21 20 19 40 40 H 1.07994 * 120.05868 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.39819 * 86.08413 * 25 23 22 42 42 H 1.09004 * 109.39751 * 205.82815 * 25 23 22 43 43 H 1.08997 * 109.16923 * 290.73204 * 26 25 23 44 44 H 1.08994 * 109.12233 * 171.49975 * 26 25 23 45 45 H 0.96999 * 119.39217 * 142.32095 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8814 1.3818 10 1 6.4415 2.1142 2.0849 11 1 6.4395 -0.3097 2.1549 12 1 6.6135 0.8417 0.0278 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3402 2.6319 -0.4338 16 6 0.0397 3.3317 -2.6433 17 8 0.8148 3.3638 -3.5767 18 7 -1.1778 3.8981 -2.7587 19 6 -1.5117 4.6025 -3.9128 20 6 -2.3305 5.7249 -3.8273 21 6 -2.6602 6.4282 -4.9653 22 6 -2.1788 6.0034 -6.2031 23 6 -1.3594 4.8727 -6.2877 24 6 -1.0297 4.1778 -5.1482 25 6 -0.8489 4.4347 -7.6349 26 6 -1.8952 4.7279 -8.7077 27 7 -2.3505 6.1133 -8.6311 28 6 -2.5191 6.7287 -7.4436 29 8 -2.9456 7.8662 -7.3946 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8292 -0.0617 2.9495 36 1 2.2703 2.1197 -1.9991 37 1 -1.8216 3.8152 -2.0378 38 1 -2.7048 6.0474 -2.8669 39 1 -3.2922 7.3015 -4.8996 40 1 -0.3976 3.3044 -5.2111 41 1 0.0690 4.9746 -7.8673 42 1 -0.6426 3.3646 -7.6135 43 1 -2.7475 4.0630 -8.5676 44 1 -1.4591 4.5484 -9.6903 45 1 -2.5353 6.5997 -9.4497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595006040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:17 Heat of formation + Delta-G solvation = -104.171716 kcal Electronic energy + Delta-G solvation = -29453.147032 eV Core-core repulsion = 25241.261411 eV Total energy + Delta-G solvation = -4211.885621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30453 -41.47208 -40.19882 -38.96039 -37.40456 -37.11946 -35.81972 -34.31728 -33.13148 -32.81661 -31.17317 -30.06611 -29.18216 -26.72183 -25.24160 -24.96901 -23.96719 -22.93125 -21.94312 -21.22839 -20.65155 -20.00650 -18.61763 -18.35383 -18.12120 -18.00966 -17.29257 -17.17012 -16.89921 -16.53810 -16.11759 -15.94316 -15.73583 -15.38707 -15.01431 -14.91007 -14.67103 -14.60982 -14.17807 -14.08177 -13.85410 -13.59348 -13.50127 -13.20026 -13.19294 -12.96494 -12.75215 -12.69527 -12.47918 -12.18385 -12.11284 -12.10297 -11.59207 -11.51351 -11.11442 -11.10375 -10.64864 -10.53388 -10.18170 -9.88462 -9.84607 -9.35424 -8.18562 -6.35315 -0.46038 0.27219 0.38772 1.25292 1.45307 1.47077 1.56681 1.68397 2.15564 2.26256 2.39098 2.68840 2.73051 3.11599 3.44709 3.53188 3.58819 3.73679 3.93355 4.13188 4.26044 4.31888 4.35870 4.49822 4.56166 4.59911 4.72379 4.78897 4.89189 4.98396 5.02400 5.06046 5.12184 5.19614 5.23912 5.30666 5.36312 5.39804 5.56737 5.66974 5.74166 5.79799 5.90850 5.95502 6.12235 6.12318 6.49635 6.67260 6.76478 7.10173 7.13910 7.36676 8.86459 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002139 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.367000 B =13085.361212 C =13516.673826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.015 0.985 5 C -0.553 4.553 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.264 1.264 13 N -0.669 5.669 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.519 3.481 17 O -0.512 6.512 18 N -0.635 5.635 19 C 0.163 3.837 20 C -0.149 4.149 21 C -0.040 4.040 22 C -0.173 4.173 23 C -0.028 4.028 24 C -0.139 4.139 25 C -0.105 4.105 26 C 0.113 3.887 27 N -0.715 5.715 28 C 0.564 3.436 29 O -0.583 6.583 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.267 0.733 36 H 0.409 0.591 37 H 0.433 0.567 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.078 0.922 44 H 0.127 0.873 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.427 5.611 -20.655 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.591 4.591 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.188 1.188 13 N -0.319 5.319 14 C 0.275 3.725 15 O -0.424 6.424 16 C 0.301 3.699 17 O -0.387 6.387 18 N -0.282 5.282 19 C 0.068 3.932 20 C -0.169 4.169 21 C -0.060 4.060 22 C -0.177 4.177 23 C -0.029 4.029 24 C -0.159 4.159 25 C -0.142 4.142 26 C -0.010 4.010 27 N -0.367 5.367 28 C 0.353 3.647 29 O -0.465 6.465 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.273 0.727 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.145 0.855 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.518 5.906 -20.228 24.015 hybrid contribution 0.870 0.131 0.476 1.000 sum -10.648 6.037 -19.752 23.237 Atomic orbital electron populations 1.21709 0.96490 0.99715 1.00459 1.21821 0.94201 0.98478 1.01749 1.18637 0.94033 0.89626 0.80316 0.96741 1.21517 0.91274 1.39418 1.06863 0.91351 1.25665 1.03045 0.94233 0.94962 1.70006 1.36964 1.37977 1.09773 0.85421 0.79397 0.77511 0.78493 1.20459 1.20756 1.18833 1.46227 1.14420 1.52961 1.18288 1.19949 0.83747 0.80867 0.87901 1.90747 1.51489 1.59715 1.40430 1.20339 0.82253 0.79078 0.88194 1.90726 1.51572 1.56629 1.39731 1.43020 1.15077 1.50771 1.19320 1.18154 0.97070 0.92154 0.85802 1.21111 1.01576 0.93684 1.00488 1.21078 0.96591 0.98119 0.90205 1.19859 1.04801 0.98932 0.94116 1.20105 0.94122 0.92290 0.96392 1.21127 1.02462 1.02067 0.90208 1.20999 0.99356 1.04665 0.89166 1.21571 0.97648 0.80706 1.01100 1.45718 1.67777 1.15585 1.07595 1.18337 0.76319 0.85018 0.85040 1.90788 1.47950 1.19901 1.87862 0.94618 0.93925 0.93246 0.94019 0.90389 0.92396 0.75542 0.72665 0.82443 0.83736 0.84011 0.88822 0.86379 0.90383 0.85514 0.74954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 8.51 71.98 0.61 -4.52 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.53 16 3 C 0.28 13.36 2.24 44.24 0.10 13.46 16 4 H 0.01 0.83 7.58 -2.39 -0.02 0.81 16 5 C -0.55 -28.28 8.73 25.60 0.22 -28.06 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.13 5.29 84.65 0.45 1.58 16 8 N -0.91 -49.60 11.29 21.45 0.24 -49.35 16 9 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 N -0.67 -26.89 5.01 -447.54 -2.24 -29.13 16 14 C 0.50 18.16 6.46 87.24 0.56 18.72 16 15 O -0.54 -21.92 13.62 -3.28 -0.04 -21.97 16 16 C 0.52 15.66 7.72 87.24 0.67 16.34 16 17 O -0.51 -16.42 13.88 -3.30 -0.05 -16.47 16 18 N -0.64 -15.17 5.30 -304.75 -1.61 -16.78 16 19 C 0.16 3.63 6.29 38.43 0.24 3.88 16 20 C -0.15 -2.82 9.95 22.39 0.22 -2.60 16 21 C -0.04 -0.82 9.63 22.45 0.22 -0.60 16 22 C -0.17 -3.63 5.78 -20.10 -0.12 -3.75 16 23 C -0.03 -0.51 5.68 -19.68 -0.11 -0.62 16 24 C -0.14 -3.03 8.35 22.33 0.19 -2.84 16 25 C -0.10 -1.13 6.04 29.71 0.18 -0.95 16 26 C 0.11 0.77 7.04 86.37 0.61 1.38 16 27 N -0.71 -9.24 5.58 -467.63 -2.61 -11.85 16 28 C 0.56 12.22 7.78 86.73 0.67 12.89 16 29 O -0.58 -16.99 17.45 -3.98 -0.07 -17.06 16 30 H 0.03 1.54 7.85 -2.39 -0.02 1.52 16 31 H 0.04 1.64 5.64 -2.39 -0.01 1.62 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.08 4.04 5.95 -2.38 -0.01 4.02 16 35 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.41 15.21 8.01 -92.70 -0.74 14.47 16 37 H 0.43 8.97 8.29 -92.70 -0.77 8.20 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.14 2.74 7.84 -2.91 -0.02 2.72 16 40 H 0.14 3.30 6.21 -2.91 -0.02 3.28 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.12 0.88 8.07 -2.38 -0.02 0.86 16 43 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.41 3.95 8.92 -92.71 -0.83 3.13 16 Total: -1.00 -68.03 373.10 -0.73 -68.75 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -1.26 Total: 32.04 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 4.89 Total: 18.77 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -6.22 Total: -107.12 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -0.16 Total: -55.49 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -68.03 -0.73 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595006040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.417 kcal (2) G-P(sol) polarization free energy of solvation -68.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds