Wall clock time and date at job start Wed Apr 1 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47055 * 60.00233 * 4 2 1 6 6 H 1.08000 * 120.00290 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00258 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99506 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47155 * 59.99584 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46879 * 299.99587 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.34775 * 119.99531 * 179.97438 * 14 13 2 16 16 O 1.21552 * 120.00294 * 0.02562 * 15 14 13 17 17 C 1.47862 * 120.00030 * 179.97438 * 15 14 13 18 18 C 1.39702 * 120.07366 * 0.02562 * 17 15 14 19 19 C 1.38048 * 120.14611 * 179.97438 * 18 17 15 20 20 C 1.38102 * 120.29333 * 0.05225 * 19 18 17 21 21 C 1.39647 * 120.14955 * 359.97438 * 20 19 18 22 22 C 1.47889 * 120.07704 * 179.97438 * 21 20 19 23 23 N 1.32680 * 126.35210 * 179.68538 * 22 21 20 24 24 C 1.34035 * 105.78224 * 179.88884 * 23 22 21 25 25 O 1.21926 * 126.41643 * 180.17636 * 24 23 22 26 26 O 1.34165 * 107.16958 * 0.37306 * 24 23 22 27 27 N 1.21321 * 109.82257 * 359.76357 * 26 24 23 28 28 H 0.97006 * 125.04005 * 180.02562 * 27 26 24 29 29 C 1.39302 * 120.07509 * 179.73000 * 17 15 14 30 30 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 35 35 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 36 36 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 37 37 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 38 38 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 39 39 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 40 40 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 41 41 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 42 42 H 1.08005 * 119.92622 * 0.02562 * 18 17 15 43 43 H 1.08000 * 119.85435 * 180.02562 * 19 18 17 44 44 H 1.08004 * 119.92659 * 179.97438 * 20 19 18 45 45 H 1.07997 * 120.14897 * 359.97438 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8525 9 14 1.2472 0.3977 -5.2572 10 1 1.7421 1.7979 -5.2578 11 1 1.7423 -0.3023 -6.4697 12 1 -0.2378 0.3976 -5.2567 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8768 -0.4911 3.6696 16 8 2.5756 -1.4794 3.7812 17 6 1.3844 0.2063 4.8768 18 6 0.5815 1.3425 4.7504 19 6 0.1205 1.9945 5.8765 20 6 0.4500 1.5296 7.1345 21 6 1.2522 0.3952 7.2752 22 6 1.6045 -0.1009 8.6231 23 7 2.3490 -1.1636 8.9002 24 6 2.4045 -1.2311 10.2377 25 8 2.9976 -2.0685 10.8962 26 8 1.6816 -0.2072 10.7163 27 7 1.2243 0.4388 9.7968 28 1 0.6677 1.2275 9.8928 29 6 1.7149 -0.2718 6.1428 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -1.7490 -1.2491 38 1 2.8608 -1.8831 -4.7334 39 1 1.6766 -1.7488 1.2494 40 1 3.1299 -0.7208 1.2495 41 1 0.9942 0.7583 2.3564 42 1 0.3202 1.7112 3.7694 43 1 -0.5002 2.8722 5.7733 44 1 0.0864 2.0445 8.0116 45 1 2.3309 -1.1528 6.2461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597660754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:51 Heat of formation + Delta-G solvation = -6.806940 kcal Electronic energy + Delta-G solvation = -28790.378767 eV Core-core repulsion = 24582.715200 eV Total energy + Delta-G solvation = -4207.663567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.67779 -41.42526 -39.86383 -39.37061 -38.55142 -37.02509 -35.33040 -34.17622 -33.77905 -32.23555 -32.01654 -29.09721 -27.91442 -27.80339 -26.13329 -25.61173 -24.87675 -23.66828 -23.09184 -21.64203 -21.06356 -20.00969 -19.67240 -18.93698 -18.33967 -17.67021 -17.48807 -17.17861 -16.83817 -16.45873 -16.45761 -16.04217 -15.59045 -15.20593 -15.01309 -14.99492 -14.70975 -14.67280 -14.38483 -14.25844 -13.90310 -13.76419 -13.08765 -12.96842 -12.90782 -12.80279 -12.73245 -12.54284 -12.38737 -12.28920 -12.19250 -11.97928 -11.91333 -11.50405 -11.26675 -10.90479 -10.81163 -10.48411 -10.43538 -10.29833 -10.08745 -9.98083 -8.11494 -6.19529 -0.90398 -0.18411 0.50444 0.63815 1.44840 1.46892 1.54062 1.55616 1.77841 1.85962 2.14001 2.46975 2.70376 2.74293 3.23006 3.44195 3.59183 3.82704 3.96764 3.97586 4.06838 4.11098 4.24649 4.27184 4.42511 4.52436 4.71912 4.74527 4.81876 4.89861 5.00207 5.06375 5.12959 5.17025 5.18888 5.22272 5.38428 5.46736 5.48761 5.54970 5.57248 5.60226 5.68303 5.84256 5.92641 6.23803 6.32060 6.54002 6.71603 6.96171 7.19503 7.48366 9.00740 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.001789 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.409832 B =15643.799745 C =16403.843940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.076 0.924 7 C -0.009 4.009 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.265 1.265 11 H -0.295 1.295 12 H -0.265 1.265 13 C 0.140 3.860 14 N -0.698 5.698 15 C 0.545 3.455 16 O -0.588 6.588 17 C -0.150 4.150 18 C -0.039 4.039 19 C -0.109 4.109 20 C -0.032 4.032 21 C -0.079 4.079 22 C 0.417 3.583 23 N -0.588 5.588 24 C 0.555 3.445 25 O -0.524 6.524 26 O -0.071 6.071 27 N -0.469 5.469 28 H 0.496 0.504 29 C -0.012 4.012 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.076 0.924 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.258 0.742 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.415 0.585 42 H 0.161 0.839 43 H 0.191 0.809 44 H 0.187 0.813 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 18.631 25.246 34.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.094 0.906 7 C -0.205 4.205 8 N -0.581 5.581 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.221 1.221 12 H -0.190 1.190 13 C 0.016 3.984 14 N -0.351 5.351 15 C 0.334 3.666 16 O -0.469 6.469 17 C -0.153 4.153 18 C -0.058 4.058 19 C -0.126 4.126 20 C -0.051 4.051 21 C -0.081 4.081 22 C 0.153 3.847 23 N -0.351 5.351 24 C 0.305 3.695 25 O -0.409 6.409 26 O -0.093 6.093 27 N -0.137 5.137 28 H 0.356 0.644 29 C -0.034 4.034 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.255 0.745 42 H 0.178 0.822 43 H 0.208 0.792 44 H 0.204 0.796 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.931 16.881 25.579 32.888 hybrid contribution 0.049 -0.064 -0.753 0.758 sum -11.881 16.817 24.826 32.254 Atomic orbital electron populations 1.21718 0.93243 1.01046 1.02015 1.20714 0.96957 0.96421 0.92385 1.21719 0.99906 0.94384 1.02015 1.18983 0.94214 0.94200 0.92557 1.21574 1.30371 1.12118 0.90915 0.90560 1.25994 0.95753 0.95897 1.02880 1.70127 1.38835 1.25049 1.24086 0.85578 0.78989 0.78739 0.78191 1.19010 1.22097 1.19002 1.21261 0.97884 0.95477 0.83809 1.45804 1.52866 1.32002 1.04408 1.18806 0.79807 0.83674 0.84341 1.90805 1.40197 1.28493 1.87417 1.19707 1.04351 0.99618 0.91607 1.22045 0.90730 0.90633 1.02415 1.21574 0.99909 1.01325 0.89826 1.21895 0.91177 0.90901 1.01140 1.17365 1.06077 1.00185 0.84523 1.23250 0.85542 0.86227 0.89689 1.73610 1.29119 1.21913 1.10453 1.21748 0.80672 0.81301 0.85783 1.91145 1.47052 1.36965 1.65694 1.85207 1.60276 1.39571 1.24197 1.42589 1.46358 1.26852 0.97914 0.64377 1.21240 0.94022 0.97427 0.90680 0.90521 0.92372 0.94636 0.94634 0.92377 0.90513 0.99791 0.99796 0.93286 0.93590 0.93592 0.74489 0.82157 0.79208 0.79621 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.05 71.98 0.58 -3.07 16 2 C -0.06 -2.24 0.54 -52.18 -0.03 -2.27 16 3 C -0.12 -3.65 8.05 71.98 0.58 -3.07 16 4 C 0.04 1.87 4.04 29.85 0.12 2.00 16 5 C -0.51 -26.44 7.65 25.60 0.20 -26.24 16 6 H 0.08 3.61 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 8 N -0.94 -56.60 13.29 21.45 0.28 -56.32 16 9 Si 0.96 42.41 29.54 68.60 2.03 44.44 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 13 C 0.14 4.69 4.56 86.38 0.39 5.08 16 14 N -0.70 -16.70 4.91 -465.95 -2.29 -18.99 16 15 C 0.55 14.68 7.77 86.79 0.67 15.36 16 16 O -0.59 -22.46 16.34 -3.88 -0.06 -22.52 16 17 C -0.15 -2.52 5.87 -20.12 -0.12 -2.64 16 18 C -0.04 -0.23 9.54 22.58 0.22 -0.02 16 19 C -0.11 0.15 10.02 22.19 0.22 0.38 16 20 C -0.03 0.04 9.70 22.58 0.22 0.26 16 21 C -0.08 -0.73 5.87 -20.12 -0.12 -0.85 16 22 C 0.42 5.31 7.80 136.74 1.07 6.38 16 23 N -0.59 -14.58 11.23 -432.47 -4.86 -19.43 16 24 C 0.56 14.69 9.59 130.00 1.25 15.94 16 25 O -0.52 -18.71 18.07 18.05 0.33 -18.38 16 26 O -0.07 -1.06 11.33 93.07 1.05 -0.01 16 27 N -0.47 -2.52 6.74 -53.58 -0.36 -2.88 16 28 H 0.50 -3.60 8.01 -92.70 -0.74 -4.34 16 29 C -0.01 -0.23 9.24 22.79 0.21 -0.01 16 30 H 0.08 1.51 6.86 -2.39 -0.02 1.50 16 31 H 0.06 1.87 6.62 -2.39 -0.02 1.85 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.87 6.62 -2.39 -0.02 1.85 16 35 H 0.08 1.52 6.86 -2.39 -0.02 1.50 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.42 6.44 4.19 -92.71 -0.39 6.06 16 42 H 0.16 0.22 6.39 -2.91 -0.02 0.20 16 43 H 0.19 -1.77 8.06 -2.91 -0.02 -1.79 16 44 H 0.19 -2.27 7.13 -2.91 -0.02 -2.29 16 45 H 0.12 3.11 7.45 -2.91 -0.02 3.09 16 Total: -1.00 -93.07 377.53 1.98 -91.08 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: -0.06 Total: -4.20 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.92 Total: 7.22 kcal Atomic # 7 Polarization: -90.40 SS G_CDS: -7.22 Total: -97.62 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: 1.32 Total: -40.91 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -93.07 1.98 -91.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597660754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.274 kcal (2) G-P(sol) polarization free energy of solvation -93.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds