Wall clock time and date at job start Wed Apr 1 2020 03:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46641 * 2 1 4 4 H 1.08993 * 109.47508 * 305.00222 * 3 2 1 5 5 C 1.50700 * 109.46850 * 184.99661 * 3 2 1 6 6 H 1.08000 * 120.00088 * 240.00280 * 5 3 2 7 7 C 1.37869 * 119.99804 * 60.00474 * 5 3 2 8 8 N 1.31508 * 120.00353 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 120.00028 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46730 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47039 * 119.99787 * 9 7 5 12 12 H 1.48490 * 109.47233 * 240.00154 * 9 7 5 13 13 N 1.46509 * 109.46871 * 65.00074 * 3 2 1 14 14 C 1.34770 * 119.99838 * 274.99712 * 13 3 2 15 15 O 1.21362 * 120.00235 * 359.97438 * 14 13 3 16 16 C 1.49359 * 120.00102 * 179.97438 * 14 13 3 17 17 O 1.21375 * 119.99840 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00102 * 179.97438 * 16 14 13 19 19 C 1.39762 * 119.99815 * 185.27841 * 18 16 14 20 20 C 1.39043 * 119.99039 * 213.27995 * 19 18 16 21 21 C 1.38291 * 120.36332 * 180.02562 * 20 19 18 22 22 C 1.37844 * 120.04691 * 0.02738 * 21 20 19 23 23 C 1.39765 * 119.96041 * 359.97260 * 22 21 20 24 24 C 1.38800 * 119.99476 * 33.32323 * 19 18 16 25 25 C 1.47909 * 118.78158 * 180.02562 * 23 22 21 26 26 O 1.21550 * 120.45054 * 197.71114 * 25 23 22 27 27 N 1.34809 * 119.10127 * 17.69690 * 25 23 22 28 28 C 1.46043 * 121.16487 * 2.70282 * 27 25 23 29 29 C 1.50560 * 120.87453 * 179.97438 * 22 21 20 30 30 H 1.09002 * 109.47311 * 60.00092 * 1 2 3 31 31 H 1.09003 * 109.46697 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47306 * 299.99490 * 1 2 3 33 33 H 1.09001 * 109.47255 * 240.00489 * 2 1 3 34 34 H 1.08995 * 109.46963 * 119.99901 * 2 1 3 35 35 H 0.97001 * 120.00401 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99939 * 94.99615 * 13 3 2 37 37 H 0.97003 * 120.00073 * 5.27309 * 18 16 14 38 38 H 1.07998 * 119.82038 * 0.04443 * 20 19 18 39 39 H 1.08000 * 119.97659 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.24066 * 0.24071 * 24 19 18 41 41 H 0.97002 * 119.41797 * 182.72672 * 27 25 23 42 42 H 1.09001 * 109.16202 * 82.66863 * 28 27 25 43 43 H 1.09004 * 109.16468 * 201.91818 * 28 27 25 44 44 H 1.09004 * 109.39469 * 25.85533 * 29 22 21 45 45 H 1.09003 * 109.32256 * 266.08462 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8787 -1.2278 8 7 3.4063 0.3369 -2.1728 9 14 6.0050 0.8816 -1.3816 10 1 6.5986 1.5465 -0.1940 11 1 6.4971 -0.5171 -1.4628 12 1 6.3990 1.6171 -2.6099 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6643 1.3670 15 8 -0.3399 2.6326 0.4335 16 6 0.0395 3.3315 2.6434 17 8 0.8146 3.3636 3.5769 18 7 -1.1776 3.8988 2.7584 19 6 -1.5073 4.6180 3.9105 20 6 -2.8153 4.6132 4.3822 21 6 -3.1502 5.3225 5.5211 22 6 -2.1860 6.0404 6.1957 23 6 -0.8688 6.0506 5.7283 24 6 -0.5293 5.3376 4.5829 25 6 0.1449 6.8291 6.4726 26 8 1.1992 7.1289 5.9472 27 7 -0.1164 7.2020 7.7415 28 6 -1.3527 6.8011 8.4076 29 6 -2.5301 6.8197 7.4371 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8294 -0.0609 -2.9497 36 1 2.2718 2.1232 1.9979 37 1 -1.8247 3.8079 2.0415 38 1 -3.5737 4.0521 3.8566 39 1 -4.1680 5.3141 5.8823 40 1 0.4868 5.3476 4.2171 41 1 0.5279 7.7464 8.2204 42 1 -1.2342 5.7932 8.8054 43 1 -1.5557 7.4883 9.2290 44 1 -3.4013 6.3722 7.9155 45 1 -2.7562 7.8506 7.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615213898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:28 Heat of formation + Delta-G solvation = -80.503595 kcal Electronic energy + Delta-G solvation = -29607.564386 eV Core-core repulsion = 25396.705092 eV Total energy + Delta-G solvation = -4210.859294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20862 -40.34455 -38.80942 -37.91700 -36.52535 -35.45232 -34.62019 -32.43554 -31.74666 -31.31142 -31.00792 -28.92228 -27.28512 -25.26938 -24.43230 -23.67056 -22.80961 -21.96237 -20.33768 -19.99122 -19.49050 -18.49355 -17.81942 -17.54617 -16.45492 -16.31039 -16.25956 -15.86658 -15.60093 -15.20613 -15.15535 -14.64239 -14.37142 -14.25555 -14.07220 -13.80050 -13.61140 -13.47584 -13.23339 -12.76315 -12.75140 -12.42774 -12.10678 -11.82630 -11.68873 -11.60350 -11.34147 -11.18365 -10.97002 -10.87566 -10.54178 -10.35924 -10.27203 -10.13962 -9.71737 -9.46922 -9.27785 -9.13947 -9.06664 -8.57576 -8.31345 -8.05138 -6.17759 -4.27238 0.52635 0.97581 1.80070 2.56081 2.59937 2.92692 3.23593 3.31877 3.36182 3.50223 3.71593 3.99131 4.19244 4.22032 4.31246 4.34242 4.60037 4.75070 4.87518 4.89044 5.03362 5.08177 5.14823 5.18954 5.35634 5.44453 5.56411 5.86750 5.97528 6.08855 6.11081 6.29399 6.34314 6.51484 6.53179 6.66950 6.85867 6.92473 6.96320 7.10031 7.14664 7.25564 7.47197 7.63097 7.76044 7.86250 7.94871 8.07092 8.41859 8.60539 8.84924 9.39759 10.87696 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.002398 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.078013 B =11674.955512 C =12979.861116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.267 3.733 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.496 3.504 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.143 3.857 20 C -0.115 4.115 21 C -0.103 4.103 22 C -0.073 4.073 23 C -0.119 4.119 24 C -0.057 4.057 25 C 0.566 3.434 26 O -0.527 6.527 27 N -0.728 5.728 28 C 0.114 3.886 29 C -0.098 4.098 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.402 0.598 37 H 0.425 0.575 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.405 0.595 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 10.880 19.750 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.574 4.574 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.315 5.315 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.373 6.373 18 N -0.300 5.300 19 C 0.048 3.952 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.074 4.074 23 C -0.123 4.123 24 C -0.078 4.078 25 C 0.354 3.646 26 O -0.403 6.403 27 N -0.382 5.382 28 C -0.011 4.011 29 C -0.135 4.135 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.263 0.737 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.241 0.759 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.776 10.755 19.097 27.005 hybrid contribution 1.050 0.057 0.103 1.057 sum -14.726 10.812 19.200 26.503 Atomic orbital electron populations 1.21856 0.98317 0.98427 1.01003 1.21969 0.92646 0.99365 1.02823 1.19042 0.94868 0.89394 0.80051 0.92680 1.21248 0.90292 1.39302 1.06589 0.91673 1.24868 0.98864 0.94583 0.95230 1.69887 1.35191 1.37529 1.09345 0.86354 0.84518 0.77826 0.78243 1.19579 1.20808 1.20815 1.46481 1.13402 1.52290 1.19292 1.19528 0.84619 0.81529 0.86932 1.90744 1.51242 1.59380 1.39393 1.21104 0.81641 0.78814 0.89582 1.90772 1.50490 1.56353 1.39678 1.43252 1.16707 1.51131 1.18883 1.17676 0.93826 0.94365 0.89300 1.21128 0.95099 1.00470 0.96877 1.20666 0.99149 0.97303 0.95079 1.19920 0.92610 0.98148 0.96771 1.19506 0.93451 1.01840 0.97489 1.21203 1.00860 0.92338 0.93427 1.18243 0.86050 0.78822 0.81485 1.90854 1.25606 1.55410 1.68422 1.45679 1.22440 1.55869 1.14257 1.21284 0.83456 1.01445 0.94903 1.20776 0.98622 1.00894 0.93227 0.92917 0.95454 0.94656 0.87786 0.94634 0.92497 0.76318 0.73678 0.84723 0.84750 0.83249 0.75890 0.91407 0.89307 0.88516 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.59 2.24 -69.07 -0.15 6.44 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.14 16 5 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.07 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.07 1.80 5.29 -17.83 -0.09 1.71 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.57 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.67 -14.16 5.01 -55.39 -0.28 -14.44 16 14 C 0.50 9.73 6.45 -11.63 -0.08 9.65 16 15 O -0.53 -11.08 13.62 5.49 0.07 -11.01 16 16 C 0.51 8.65 7.62 -11.63 -0.09 8.56 16 17 O -0.50 -9.43 14.16 5.47 0.08 -9.36 16 18 N -0.65 -8.88 5.32 -10.29 -0.05 -8.93 16 19 C 0.14 1.81 6.28 -83.74 -0.53 1.28 16 20 C -0.12 -1.06 9.95 -39.26 -0.39 -1.45 16 21 C -0.10 -0.79 9.71 -39.71 -0.39 -1.17 16 22 C -0.07 -0.63 5.69 -104.26 -0.59 -1.23 16 23 C -0.12 -1.48 5.78 -105.04 -0.61 -2.08 16 24 C -0.06 -0.83 8.23 -39.05 -0.32 -1.15 16 25 C 0.57 7.41 7.79 -12.29 -0.10 7.31 16 26 O -0.53 -9.13 17.45 5.32 0.09 -9.04 16 27 N -0.73 -6.09 5.58 -61.74 -0.34 -6.43 16 28 C 0.11 0.55 7.03 -4.50 -0.03 0.52 16 29 C -0.10 -0.48 6.03 -28.16 -0.17 -0.65 16 30 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.72 5.65 -51.93 -0.29 0.42 16 33 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.40 8.14 8.01 -40.82 -0.33 7.81 16 37 H 0.42 4.95 8.30 -40.82 -0.34 4.62 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.15 2.60 6.21 -52.49 -0.33 2.28 16 41 H 0.40 2.75 8.92 -40.82 -0.36 2.38 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.10 0.23 8.07 -51.93 -0.42 -0.19 16 45 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -33.08 373.49 -8.54 -41.62 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.68 Total: 12.37 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -3.66 Total: 7.52 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.05 Total: -53.38 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: 0.25 Total: -29.40 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.08 -8.54 -41.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615213898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.882 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds