Wall clock time and date at job start Wed Apr 1 2020 03:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46641 * 2 1 4 4 H 1.08993 * 109.47508 * 305.00222 * 3 2 1 5 5 C 1.50700 * 109.46850 * 184.99661 * 3 2 1 6 6 H 1.08000 * 120.00088 * 240.00280 * 5 3 2 7 7 C 1.37869 * 119.99804 * 60.00474 * 5 3 2 8 8 N 1.31508 * 120.00353 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 120.00028 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46730 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47039 * 119.99787 * 9 7 5 12 12 H 1.48490 * 109.47233 * 240.00154 * 9 7 5 13 13 N 1.46509 * 109.46871 * 65.00074 * 3 2 1 14 14 C 1.34770 * 119.99838 * 274.99712 * 13 3 2 15 15 O 1.21362 * 120.00235 * 359.97438 * 14 13 3 16 16 C 1.49359 * 120.00102 * 179.97438 * 14 13 3 17 17 O 1.21375 * 119.99840 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00102 * 179.97438 * 16 14 13 19 19 C 1.39762 * 119.99815 * 185.27841 * 18 16 14 20 20 C 1.39043 * 119.99039 * 213.27995 * 19 18 16 21 21 C 1.38291 * 120.36332 * 180.02562 * 20 19 18 22 22 C 1.37844 * 120.04691 * 0.02738 * 21 20 19 23 23 C 1.39765 * 119.96041 * 359.97260 * 22 21 20 24 24 C 1.38800 * 119.99476 * 33.32323 * 19 18 16 25 25 C 1.47909 * 118.78158 * 180.02562 * 23 22 21 26 26 O 1.21550 * 120.45054 * 197.71114 * 25 23 22 27 27 N 1.34809 * 119.10127 * 17.69690 * 25 23 22 28 28 C 1.46043 * 121.16487 * 2.70282 * 27 25 23 29 29 C 1.50560 * 120.87453 * 179.97438 * 22 21 20 30 30 H 1.09002 * 109.47311 * 60.00092 * 1 2 3 31 31 H 1.09003 * 109.46697 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47306 * 299.99490 * 1 2 3 33 33 H 1.09001 * 109.47255 * 240.00489 * 2 1 3 34 34 H 1.08995 * 109.46963 * 119.99901 * 2 1 3 35 35 H 0.97001 * 120.00401 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99939 * 94.99615 * 13 3 2 37 37 H 0.97003 * 120.00073 * 5.27309 * 18 16 14 38 38 H 1.07998 * 119.82038 * 0.04443 * 20 19 18 39 39 H 1.08000 * 119.97659 * 180.02562 * 21 20 19 40 40 H 1.07998 * 120.24066 * 0.24071 * 24 19 18 41 41 H 0.97002 * 119.41797 * 182.72672 * 27 25 23 42 42 H 1.09001 * 109.16202 * 82.66863 * 28 27 25 43 43 H 1.09004 * 109.16468 * 201.91818 * 28 27 25 44 44 H 1.09004 * 109.39469 * 25.85533 * 29 22 21 45 45 H 1.09003 * 109.32256 * 266.08462 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8787 -1.2278 8 7 3.4063 0.3369 -2.1728 9 14 6.0050 0.8816 -1.3816 10 1 6.5986 1.5465 -0.1940 11 1 6.4971 -0.5171 -1.4628 12 1 6.3990 1.6171 -2.6099 13 7 1.6523 2.0975 1.2519 14 6 0.4350 2.6643 1.3670 15 8 -0.3399 2.6326 0.4335 16 6 0.0395 3.3315 2.6434 17 8 0.8146 3.3636 3.5769 18 7 -1.1776 3.8988 2.7584 19 6 -1.5073 4.6180 3.9105 20 6 -2.8153 4.6132 4.3822 21 6 -3.1502 5.3225 5.5211 22 6 -2.1860 6.0404 6.1957 23 6 -0.8688 6.0506 5.7283 24 6 -0.5293 5.3376 4.5829 25 6 0.1449 6.8291 6.4726 26 8 1.1992 7.1289 5.9472 27 7 -0.1164 7.2020 7.7415 28 6 -1.3527 6.8011 8.4076 29 6 -2.5301 6.8197 7.4371 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8294 -0.0609 -2.9497 36 1 2.2718 2.1232 1.9979 37 1 -1.8247 3.8079 2.0415 38 1 -3.5737 4.0521 3.8566 39 1 -4.1680 5.3141 5.8823 40 1 0.4868 5.3476 4.2171 41 1 0.5279 7.7464 8.2204 42 1 -1.2342 5.7932 8.8054 43 1 -1.5557 7.4883 9.2290 44 1 -3.4013 6.3722 7.9155 45 1 -2.7562 7.8506 7.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615213898.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:27 Heat of formation + Delta-G solvation = -106.434262 kcal Electronic energy + Delta-G solvation = -29608.688824 eV Core-core repulsion = 25396.705092 eV Total energy + Delta-G solvation = -4211.983732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29243 -41.48003 -40.17409 -39.06297 -37.44978 -37.14056 -35.75297 -34.34934 -32.85092 -32.54299 -32.08837 -29.75876 -29.13618 -26.56601 -25.35310 -24.97581 -24.13371 -22.90536 -21.85637 -21.24084 -20.86726 -19.86425 -18.83438 -18.43404 -18.11061 -17.65857 -17.24458 -16.95300 -16.94368 -16.74871 -16.26757 -16.06009 -15.67036 -15.23513 -15.18762 -14.99226 -14.66521 -14.61447 -14.33248 -14.08651 -13.88558 -13.52126 -13.30216 -13.23749 -13.14303 -13.01717 -12.84544 -12.72650 -12.30389 -12.28594 -12.14736 -12.13432 -11.62315 -11.52179 -11.12564 -11.07286 -10.69146 -10.57220 -10.23902 -10.00408 -9.88073 -9.20756 -8.21685 -6.38462 -0.32975 -0.00859 0.53262 1.26571 1.41323 1.43937 1.55497 1.66981 2.10921 2.21770 2.37165 2.70442 2.74123 3.08023 3.40811 3.50648 3.68680 3.76030 3.98521 4.13156 4.31034 4.35586 4.39348 4.47194 4.53808 4.66445 4.69583 4.73727 4.93967 4.99600 5.05059 5.08555 5.16160 5.19047 5.24220 5.32714 5.37098 5.37547 5.53770 5.64328 5.74760 5.77346 5.91363 5.94928 6.08933 6.10237 6.51469 6.63361 6.74657 7.04845 7.10021 7.33200 8.83715 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.002398 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.078013 B =11674.955512 C =12979.861116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.555 4.555 6 H 0.064 0.936 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.275 1.275 12 H -0.280 1.280 13 N -0.672 5.672 14 C 0.497 3.503 15 O -0.542 6.542 16 C 0.512 3.488 17 O -0.524 6.524 18 N -0.633 5.633 19 C 0.113 3.887 20 C -0.098 4.098 21 C -0.091 4.091 22 C -0.057 4.057 23 C -0.145 4.145 24 C -0.088 4.088 25 C 0.555 3.445 26 O -0.591 6.591 27 N -0.714 5.714 28 C 0.103 3.897 29 C -0.097 4.097 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.268 0.732 36 H 0.407 0.593 37 H 0.434 0.566 38 H 0.167 0.833 39 H 0.186 0.814 40 H 0.104 0.896 41 H 0.411 0.589 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.139 0.861 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.690 11.361 22.666 32.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.593 4.593 6 H 0.082 0.918 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.793 3.207 10 H -0.193 1.193 11 H -0.200 1.200 12 H -0.206 1.206 13 N -0.321 5.321 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.294 3.706 17 O -0.399 6.399 18 N -0.281 5.281 19 C 0.019 3.981 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.058 4.058 23 C -0.149 4.149 24 C -0.109 4.109 25 C 0.343 3.657 26 O -0.473 6.473 27 N -0.366 5.366 28 C -0.020 4.020 29 C -0.134 4.134 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.274 0.726 38 H 0.184 0.816 39 H 0.203 0.797 40 H 0.122 0.878 41 H 0.248 0.752 42 H 0.090 0.910 43 H 0.148 0.852 44 H 0.157 0.843 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.237 11.264 22.081 31.377 hybrid contribution 1.940 0.006 -0.684 2.058 sum -17.297 11.270 21.397 29.733 Atomic orbital electron populations 1.21706 0.96335 0.99817 1.00466 1.21818 0.94375 0.98299 1.01717 1.18675 0.94062 0.89739 0.80179 0.96594 1.21535 0.91303 1.39546 1.06911 0.91765 1.25654 1.03149 0.94137 0.94852 1.70001 1.36895 1.37933 1.09744 0.85360 0.79281 0.78018 0.78084 1.19289 1.20013 1.20600 1.46278 1.14404 1.53009 1.18420 1.19917 0.83776 0.80784 0.87818 1.90724 1.51478 1.59656 1.40267 1.20455 0.82836 0.79250 0.88081 1.90775 1.51502 1.57635 1.40005 1.43036 1.15299 1.49965 1.19781 1.17864 0.95230 0.95533 0.89458 1.21556 0.93585 0.99645 0.97047 1.21262 1.00982 0.95059 0.93562 1.20466 0.90728 0.97031 0.97606 1.19615 0.95362 1.02546 0.97375 1.20982 0.99499 0.95014 0.95395 1.18604 0.85514 0.78707 0.82874 1.90806 1.28069 1.58143 1.70252 1.45749 1.23851 1.54331 1.12640 1.21709 0.81703 1.02870 0.95682 1.20989 0.99814 1.01215 0.91348 0.94434 0.93032 0.94090 0.90172 0.94238 0.92280 0.75828 0.72578 0.81563 0.79703 0.87825 0.75174 0.90970 0.85220 0.84308 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.36 8.51 71.98 0.61 -4.75 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.82 16 3 C 0.28 14.21 2.24 44.25 0.10 14.31 16 4 H 0.02 0.95 7.58 -2.39 -0.02 0.93 16 5 C -0.55 -30.19 8.73 25.60 0.22 -29.97 16 6 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.25 5.29 84.65 0.45 1.70 16 8 N -0.91 -51.12 11.29 21.44 0.24 -50.88 16 9 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.67 -29.99 5.01 -447.51 -2.24 -32.24 16 14 C 0.50 20.36 6.45 87.24 0.56 20.92 16 15 O -0.54 -23.43 13.62 -3.28 -0.04 -23.48 16 16 C 0.51 18.34 7.62 87.24 0.67 19.01 16 17 O -0.52 -21.15 14.16 -3.33 -0.05 -21.20 16 18 N -0.63 -17.50 5.32 -304.82 -1.62 -19.12 16 19 C 0.11 2.82 6.28 38.20 0.24 3.06 16 20 C -0.10 -1.47 9.95 22.48 0.22 -1.25 16 21 C -0.09 -0.91 9.71 22.19 0.22 -0.69 16 22 C -0.06 -0.79 5.69 -19.63 -0.11 -0.90 16 23 C -0.15 -3.62 5.78 -20.13 -0.12 -3.74 16 24 C -0.09 -2.71 8.23 22.62 0.19 -2.52 16 25 C 0.55 15.13 7.79 86.80 0.68 15.81 16 26 O -0.59 -22.51 17.45 -3.87 -0.07 -22.58 16 27 N -0.71 -11.10 5.58 -467.52 -2.61 -13.71 16 28 C 0.10 0.58 7.03 86.33 0.61 1.18 16 29 C -0.10 -0.43 6.03 29.67 0.18 -0.25 16 30 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.04 1.67 5.65 -2.39 -0.01 1.66 16 33 H 0.08 4.31 5.95 -2.39 -0.01 4.29 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 36 H 0.41 17.38 8.01 -92.71 -0.74 16.64 16 37 H 0.43 9.96 8.30 -92.71 -0.77 9.19 16 38 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 39 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.10 4.10 6.21 -2.91 -0.02 4.08 16 41 H 0.41 5.26 8.92 -92.71 -0.83 4.43 16 42 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.13 -0.23 8.14 -2.38 -0.02 -0.25 16 44 H 0.14 -0.41 8.07 -2.39 -0.02 -0.43 16 45 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -80.05 373.49 -0.75 -80.80 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -1.26 Total: 31.19 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 4.88 Total: 26.10 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -6.23 Total: -115.94 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -0.16 Total: -67.25 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -80.05 -0.75 -80.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615213898.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.637 kcal (2) G-P(sol) polarization free energy of solvation -80.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds