Wall clock time and date at job start Wed Apr 1 2020 03:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47097 * 2 1 4 4 H 1.08999 * 109.47017 * 55.00453 * 3 2 1 5 5 C 1.50705 * 109.46917 * 175.00457 * 3 2 1 6 6 H 1.07997 * 120.00136 * 120.00477 * 5 3 2 7 7 C 1.37876 * 119.99962 * 299.99933 * 5 3 2 8 8 N 1.31518 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00179 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46825 * 60.00327 * 9 7 5 11 11 H 1.48495 * 109.47154 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47034 * 300.00438 * 9 7 5 13 13 N 1.46501 * 109.47041 * 295.00270 * 3 2 1 14 14 C 1.34773 * 120.00110 * 85.00407 * 13 3 2 15 15 O 1.21364 * 119.99731 * 359.97438 * 14 13 3 16 16 C 1.49354 * 120.00129 * 179.97438 * 14 13 3 17 17 O 1.21374 * 120.00098 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99643 * 179.97438 * 16 14 13 19 19 C 1.39761 * 119.99865 * 185.27821 * 18 16 14 20 20 C 1.39047 * 119.99368 * 213.35180 * 19 18 16 21 21 C 1.38285 * 120.36131 * 180.02562 * 20 19 18 22 22 C 1.37840 * 120.04892 * 359.97438 * 21 20 19 23 23 C 1.39759 * 119.96330 * 359.97347 * 22 21 20 24 24 C 1.38806 * 119.99217 * 33.36749 * 19 18 16 25 25 C 1.47914 * 118.78096 * 180.02562 * 23 22 21 26 26 O 1.21555 * 120.44845 * 197.69429 * 25 23 22 27 27 N 1.34821 * 119.09949 * 17.96574 * 25 23 22 28 28 C 1.46018 * 121.18202 * 2.17176 * 27 25 23 29 29 C 1.50591 * 120.87155 * 179.97438 * 22 21 20 30 30 H 1.08996 * 109.47498 * 59.99741 * 1 2 3 31 31 H 1.08999 * 109.47536 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46791 * 299.99845 * 1 2 3 33 33 H 1.08999 * 109.46643 * 240.00055 * 2 1 3 34 34 H 1.08999 * 109.47235 * 120.00703 * 2 1 3 35 35 H 0.97005 * 119.99858 * 180.02562 * 8 7 5 36 36 H 0.97006 * 119.99720 * 264.99333 * 13 3 2 37 37 H 0.96996 * 120.00846 * 5.28347 * 18 16 14 38 38 H 1.07992 * 119.81600 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.97062 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.23998 * 359.95773 * 24 19 18 41 41 H 0.96992 * 119.41361 * 182.41410 * 27 25 23 42 42 H 1.08997 * 109.24962 * 202.19239 * 28 27 25 43 43 H 1.09003 * 108.89697 * 83.04983 * 28 27 25 44 44 H 1.08998 * 109.39541 * 266.11954 * 29 22 21 45 45 H 1.08998 * 109.38968 * 25.83983 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2814 1.3820 11 1 6.3979 0.2176 2.6506 12 1 6.5975 0.1472 0.2346 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3400 2.6319 -0.4336 16 6 0.0401 3.3327 -2.6429 17 8 0.8152 3.3647 -3.5763 18 7 -1.1774 3.8992 -2.7580 19 6 -1.5894 4.4268 -3.9849 20 6 -2.4149 5.5451 -4.0185 21 6 -2.8276 6.0731 -5.2281 22 6 -2.4207 5.4917 -6.4098 23 6 -1.5900 4.3681 -6.3851 24 6 -1.1746 3.8340 -5.1695 25 6 -1.1688 3.7655 -7.6686 26 8 -0.7286 2.6329 -7.7023 27 7 -1.2744 4.4915 -8.7997 28 6 -1.7512 5.8713 -8.7707 29 6 -2.8594 6.0510 -7.7374 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8294 -0.0614 2.9497 36 1 2.2719 2.1232 -1.9978 37 1 -1.7677 3.9408 -1.9895 38 1 -2.7356 6.0038 -3.0949 39 1 -3.4692 6.9417 -5.2469 40 1 -0.5330 2.9655 -5.1476 41 1 -1.0327 4.0890 -9.6484 42 1 -2.1326 6.1406 -9.7556 43 1 -0.9182 6.5274 -8.5180 44 1 -3.7537 5.5263 -8.0735 45 1 -3.0838 7.1119 -7.6268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615213899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:31 Heat of formation + Delta-G solvation = -80.513426 kcal Electronic energy + Delta-G solvation = -29626.564633 eV Core-core repulsion = 25415.704913 eV Total energy + Delta-G solvation = -4210.859720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.20972 -40.34511 -38.80936 -37.91766 -36.52768 -35.45000 -34.62059 -32.43533 -31.74954 -31.31412 -30.99577 -28.92333 -27.28019 -25.27018 -24.43410 -23.67157 -22.80268 -21.96570 -20.33280 -19.99089 -19.48496 -18.49262 -17.81957 -17.54823 -16.45036 -16.31068 -16.24960 -15.93939 -15.51304 -15.31756 -15.09737 -14.62663 -14.35352 -14.24146 -14.09711 -13.79121 -13.66628 -13.36737 -13.33041 -12.76124 -12.74478 -12.40758 -12.09522 -11.82932 -11.68471 -11.60644 -11.32514 -11.18731 -10.99030 -10.85473 -10.54412 -10.36335 -10.27370 -10.14377 -9.70389 -9.47087 -9.27864 -9.15414 -9.06549 -8.56748 -8.31545 -8.04916 -6.17574 -4.27360 0.52512 0.97411 1.80041 2.55979 2.59577 2.92368 3.25656 3.30340 3.32812 3.50074 3.71574 3.99103 4.18967 4.21685 4.30973 4.33911 4.59880 4.74844 4.87470 4.89063 5.03367 5.08204 5.14629 5.18853 5.35471 5.44355 5.56283 5.86583 5.97346 6.08846 6.10782 6.31737 6.36656 6.51149 6.55192 6.66740 6.85462 6.93739 6.97584 7.11016 7.15054 7.26758 7.48061 7.62476 7.76621 7.86170 7.94313 8.07675 8.41984 8.60175 8.84518 9.39374 10.87745 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.002310 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.808380 B =12119.585525 C =12695.619812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.495 3.505 15 O -0.529 6.529 16 C 0.506 3.494 17 O -0.500 6.500 18 N -0.652 5.652 19 C 0.143 3.857 20 C -0.115 4.115 21 C -0.103 4.103 22 C -0.073 4.073 23 C -0.119 4.119 24 C -0.058 4.058 25 C 0.567 3.433 26 O -0.527 6.527 27 N -0.728 5.728 28 C 0.114 3.886 29 C -0.098 4.098 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.425 0.575 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.405 0.595 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.041 13.837 -18.558 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.315 5.315 14 C 0.274 3.726 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.373 6.373 18 N -0.300 5.300 19 C 0.048 3.952 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.075 4.075 23 C -0.123 4.123 24 C -0.079 4.079 25 C 0.354 3.646 26 O -0.403 6.403 27 N -0.382 5.382 28 C -0.011 4.011 29 C -0.135 4.135 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.263 0.737 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.241 0.759 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.746 13.147 -18.115 26.803 hybrid contribution 1.016 -0.032 -0.167 1.030 sum -13.730 13.116 -18.282 26.358 Atomic orbital electron populations 1.21856 0.98288 0.98474 1.00997 1.21971 0.92667 0.99366 1.02840 1.19028 0.94795 0.89420 0.80011 0.92699 1.21169 0.90289 1.39542 1.06597 0.91803 1.24868 0.98842 0.94567 0.95231 1.69875 1.35365 1.37340 1.09335 0.86460 0.84501 0.78412 0.77499 1.20112 1.21085 1.20029 1.46483 1.13312 1.52396 1.19272 1.19527 0.84577 0.81597 0.86915 1.90745 1.51080 1.59653 1.39276 1.21104 0.81389 0.78720 0.89917 1.90771 1.50416 1.55696 1.40409 1.43251 1.17521 1.57543 1.11661 1.17680 0.98059 0.94006 0.85411 1.21131 0.99274 0.93962 0.99198 1.20665 1.00539 1.00294 0.90681 1.19921 0.97374 0.94726 0.95436 1.19502 1.01855 0.97711 0.93211 1.21202 0.98116 0.99157 0.89384 1.18246 0.77144 0.84997 0.84196 1.90852 1.44642 1.18326 1.86528 1.45674 1.68553 1.14462 1.09535 1.21278 0.97023 0.82686 1.00111 1.20771 0.98717 1.02516 0.91496 0.94632 0.95431 0.92945 0.94600 0.87800 0.92376 0.76323 0.73674 0.84708 0.84746 0.83265 0.75897 0.89290 0.91436 0.89557 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.47 16 4 H 0.06 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.17 11.29 55.43 0.63 -23.55 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.67 -14.17 5.01 -55.39 -0.28 -14.45 16 14 C 0.50 9.73 6.46 -11.63 -0.08 9.65 16 15 O -0.53 -11.08 13.62 5.48 0.07 -11.01 16 16 C 0.51 8.65 7.62 -11.63 -0.09 8.56 16 17 O -0.50 -9.43 14.16 5.48 0.08 -9.36 16 18 N -0.65 -8.88 5.32 -10.29 -0.05 -8.94 16 19 C 0.14 1.81 6.28 -83.73 -0.53 1.28 16 20 C -0.11 -1.06 9.95 -39.26 -0.39 -1.45 16 21 C -0.10 -0.79 9.71 -39.71 -0.39 -1.17 16 22 C -0.07 -0.63 5.69 -104.25 -0.59 -1.23 16 23 C -0.12 -1.47 5.78 -105.04 -0.61 -2.08 16 24 C -0.06 -0.83 8.24 -39.04 -0.32 -1.15 16 25 C 0.57 7.37 7.79 -12.28 -0.10 7.27 16 26 O -0.53 -9.07 17.45 5.32 0.09 -8.98 16 27 N -0.73 -6.05 5.58 -61.76 -0.34 -6.40 16 28 C 0.11 0.55 7.02 -4.52 -0.03 0.51 16 29 C -0.10 -0.48 6.03 -28.15 -0.17 -0.65 16 30 H 0.03 0.74 5.64 -51.93 -0.29 0.45 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.17 7.85 -51.92 -0.41 0.77 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.40 8.13 8.01 -40.82 -0.33 7.81 16 37 H 0.42 4.96 8.30 -40.82 -0.34 4.62 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.15 2.58 6.21 -52.49 -0.33 2.25 16 41 H 0.40 2.72 8.92 -40.82 -0.36 2.36 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.10 0.23 8.07 -51.93 -0.42 -0.19 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -32.98 373.49 -8.54 -41.52 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.68 Total: 12.55 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -3.66 Total: 7.42 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.05 Total: -53.33 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: 0.25 Total: -29.34 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.98 -8.54 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615213899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.990 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds