Wall clock time and date at job start Wed Apr 1 2020 03:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47097 * 2 1 4 4 H 1.08999 * 109.47017 * 55.00453 * 3 2 1 5 5 C 1.50705 * 109.46917 * 175.00457 * 3 2 1 6 6 H 1.07997 * 120.00136 * 120.00477 * 5 3 2 7 7 C 1.37876 * 119.99962 * 299.99933 * 5 3 2 8 8 N 1.31518 * 119.99830 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00179 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46825 * 60.00327 * 9 7 5 11 11 H 1.48495 * 109.47154 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47034 * 300.00438 * 9 7 5 13 13 N 1.46501 * 109.47041 * 295.00270 * 3 2 1 14 14 C 1.34773 * 120.00110 * 85.00407 * 13 3 2 15 15 O 1.21364 * 119.99731 * 359.97438 * 14 13 3 16 16 C 1.49354 * 120.00129 * 179.97438 * 14 13 3 17 17 O 1.21374 * 120.00098 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99643 * 179.97438 * 16 14 13 19 19 C 1.39761 * 119.99865 * 185.27821 * 18 16 14 20 20 C 1.39047 * 119.99368 * 213.35180 * 19 18 16 21 21 C 1.38285 * 120.36131 * 180.02562 * 20 19 18 22 22 C 1.37840 * 120.04892 * 359.97438 * 21 20 19 23 23 C 1.39759 * 119.96330 * 359.97347 * 22 21 20 24 24 C 1.38806 * 119.99217 * 33.36749 * 19 18 16 25 25 C 1.47914 * 118.78096 * 180.02562 * 23 22 21 26 26 O 1.21555 * 120.44845 * 197.69429 * 25 23 22 27 27 N 1.34821 * 119.09949 * 17.96574 * 25 23 22 28 28 C 1.46018 * 121.18202 * 2.17176 * 27 25 23 29 29 C 1.50591 * 120.87155 * 179.97438 * 22 21 20 30 30 H 1.08996 * 109.47498 * 59.99741 * 1 2 3 31 31 H 1.08999 * 109.47536 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46791 * 299.99845 * 1 2 3 33 33 H 1.08999 * 109.46643 * 240.00055 * 2 1 3 34 34 H 1.08999 * 109.47235 * 120.00703 * 2 1 3 35 35 H 0.97005 * 119.99858 * 180.02562 * 8 7 5 36 36 H 0.97006 * 119.99720 * 264.99333 * 13 3 2 37 37 H 0.96996 * 120.00846 * 5.28347 * 18 16 14 38 38 H 1.07992 * 119.81600 * 0.02562 * 20 19 18 39 39 H 1.07998 * 119.97062 * 179.97438 * 21 20 19 40 40 H 1.08001 * 120.23998 * 359.95773 * 24 19 18 41 41 H 0.96992 * 119.41361 * 182.41410 * 27 25 23 42 42 H 1.08997 * 109.24962 * 202.19239 * 28 27 25 43 43 H 1.09003 * 108.89697 * 83.04983 * 28 27 25 44 44 H 1.08998 * 109.39541 * 266.11954 * 29 22 21 45 45 H 1.08998 * 109.38968 * 25.83983 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1434 0.8783 1.2278 8 7 3.4063 0.3365 2.1727 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2814 1.3820 11 1 6.3979 0.2176 2.6506 12 1 6.5975 0.1472 0.2346 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3400 2.6319 -0.4336 16 6 0.0401 3.3327 -2.6429 17 8 0.8152 3.3647 -3.5763 18 7 -1.1774 3.8992 -2.7580 19 6 -1.5894 4.4268 -3.9849 20 6 -2.4149 5.5451 -4.0185 21 6 -2.8276 6.0731 -5.2281 22 6 -2.4207 5.4917 -6.4098 23 6 -1.5900 4.3681 -6.3851 24 6 -1.1746 3.8340 -5.1695 25 6 -1.1688 3.7655 -7.6686 26 8 -0.7286 2.6329 -7.7023 27 7 -1.2744 4.4915 -8.7997 28 6 -1.7512 5.8713 -8.7707 29 6 -2.8594 6.0510 -7.7374 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8294 -0.0614 2.9497 36 1 2.2719 2.1232 -1.9978 37 1 -1.7677 3.9408 -1.9895 38 1 -2.7356 6.0038 -3.0949 39 1 -3.4692 6.9417 -5.2469 40 1 -0.5330 2.9655 -5.1476 41 1 -1.0327 4.0890 -9.6484 42 1 -2.1326 6.1406 -9.7556 43 1 -0.9182 6.5274 -8.5180 44 1 -3.7537 5.5263 -8.0735 45 1 -3.0838 7.1119 -7.6268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615213899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:31 Heat of formation + Delta-G solvation = -106.270208 kcal Electronic energy + Delta-G solvation = -29627.681531 eV Core-core repulsion = 25415.704913 eV Total energy + Delta-G solvation = -4211.976618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29210 -41.47781 -40.17326 -39.06166 -37.44820 -37.14039 -35.75325 -34.34299 -32.86315 -32.54183 -32.08973 -29.75796 -29.13652 -26.56386 -25.35064 -24.97959 -24.13747 -22.90973 -21.86209 -21.24175 -20.86561 -19.86042 -18.82955 -18.42353 -18.11484 -17.67295 -17.20663 -17.02062 -16.92441 -16.72783 -16.29446 -16.02596 -15.58005 -15.37673 -15.16980 -14.95417 -14.67195 -14.63410 -14.30885 -14.12019 -13.85921 -13.52799 -13.30475 -13.23167 -13.13446 -13.04115 -12.85249 -12.68882 -12.31849 -12.28695 -12.15457 -12.13656 -11.63611 -11.52379 -11.14495 -11.07109 -10.68683 -10.56083 -10.23627 -10.00265 -9.88433 -9.20835 -8.20572 -6.37737 -0.32958 -0.00820 0.53242 1.26698 1.44548 1.45265 1.53580 1.66954 2.10575 2.22273 2.37858 2.70679 2.74096 3.09000 3.40848 3.50612 3.68577 3.76038 3.98434 4.13114 4.31038 4.35567 4.39168 4.45376 4.51615 4.66346 4.68071 4.73743 4.93947 4.98752 5.05087 5.08443 5.15982 5.17889 5.23842 5.32036 5.35763 5.37475 5.53022 5.63673 5.74295 5.76945 5.91458 5.94926 6.08146 6.10367 6.51443 6.63445 6.74759 7.04938 7.10167 7.33748 8.84479 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.002310 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.808380 B =12119.585525 C =12695.619812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.019 0.981 5 C -0.556 4.556 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.269 1.269 13 N -0.672 5.672 14 C 0.497 3.503 15 O -0.542 6.542 16 C 0.512 3.488 17 O -0.524 6.524 18 N -0.633 5.633 19 C 0.112 3.888 20 C -0.099 4.099 21 C -0.091 4.091 22 C -0.057 4.057 23 C -0.145 4.145 24 C -0.087 4.087 25 C 0.555 3.445 26 O -0.591 6.591 27 N -0.714 5.714 28 C 0.103 3.897 29 C -0.097 4.097 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.268 0.732 36 H 0.407 0.593 37 H 0.434 0.566 38 H 0.166 0.834 39 H 0.185 0.815 40 H 0.105 0.895 41 H 0.411 0.589 42 H 0.130 0.870 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.086 17.207 -20.371 31.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.175 3.825 4 H 0.036 0.964 5 C -0.594 4.594 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.546 5.546 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.194 1.194 13 N -0.321 5.321 14 C 0.277 3.723 15 O -0.421 6.421 16 C 0.294 3.706 17 O -0.399 6.399 18 N -0.281 5.281 19 C 0.019 3.981 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.059 4.059 23 C -0.149 4.149 24 C -0.108 4.108 25 C 0.343 3.657 26 O -0.472 6.472 27 N -0.366 5.366 28 C -0.020 4.020 29 C -0.134 4.134 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.242 0.758 37 H 0.274 0.726 38 H 0.184 0.816 39 H 0.202 0.798 40 H 0.123 0.877 41 H 0.248 0.752 42 H 0.148 0.852 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.854 16.593 -19.980 30.961 hybrid contribution 1.505 -0.943 0.290 1.800 sum -15.349 15.650 -19.690 29.465 Atomic orbital electron populations 1.21708 0.96514 0.99709 1.00410 1.21836 0.94209 0.98638 1.01649 1.18656 0.94120 0.89533 0.80215 0.96361 1.21480 0.91216 1.39770 1.06966 0.91581 1.25675 1.03227 0.94090 0.94839 1.69999 1.37081 1.37798 1.09731 0.85448 0.79139 0.78486 0.77596 1.19685 1.20622 1.19432 1.46277 1.14328 1.53094 1.18409 1.19918 0.83714 0.80901 0.87769 1.90724 1.51287 1.59945 1.40167 1.20454 0.82578 0.79266 0.88310 1.90774 1.51486 1.57049 1.40600 1.43037 1.16090 1.56283 1.12682 1.17867 1.00338 0.96016 0.83874 1.21554 0.96871 0.91952 1.01531 1.21253 0.99638 1.00844 0.89147 1.20468 0.94707 0.92447 0.98229 1.19613 1.03726 0.99554 0.91971 1.20988 0.99313 0.99016 0.91521 1.18597 0.76749 0.84615 0.85711 1.90805 1.47810 1.21076 1.87520 1.45743 1.66758 1.15639 1.08422 1.21698 0.97485 0.80149 1.02626 1.20983 0.98716 1.04871 0.88783 0.94389 0.93249 0.94207 0.94497 0.90064 0.92280 0.75819 0.72593 0.81643 0.79752 0.87701 0.75167 0.85202 0.91060 0.88264 0.84353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -6.16 5.45 30.59 0.17 -5.99 16 3 C 0.28 14.27 2.24 44.25 0.10 14.37 16 4 H 0.02 1.08 7.58 -2.39 -0.02 1.06 16 5 C -0.56 -30.04 8.73 25.60 0.22 -29.81 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.22 5.29 84.65 0.45 1.67 16 8 N -0.91 -51.06 11.29 21.45 0.24 -50.82 16 9 Si 0.97 42.63 29.54 68.60 2.03 44.66 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.67 -29.97 5.01 -447.52 -2.24 -32.22 16 14 C 0.50 20.36 6.46 87.24 0.56 20.92 16 15 O -0.54 -23.44 13.62 -3.29 -0.04 -23.49 16 16 C 0.51 18.35 7.62 87.24 0.67 19.01 16 17 O -0.52 -21.12 14.16 -3.32 -0.05 -21.17 16 18 N -0.63 -17.52 5.32 -304.81 -1.62 -19.14 16 19 C 0.11 2.82 6.28 38.21 0.24 3.06 16 20 C -0.10 -1.50 9.95 22.48 0.22 -1.28 16 21 C -0.09 -0.92 9.71 22.19 0.22 -0.71 16 22 C -0.06 -0.79 5.69 -19.62 -0.11 -0.90 16 23 C -0.14 -3.59 5.78 -20.13 -0.12 -3.71 16 24 C -0.09 -2.67 8.24 22.62 0.19 -2.49 16 25 C 0.55 14.99 7.79 86.80 0.68 15.67 16 26 O -0.59 -22.23 17.45 -3.89 -0.07 -22.29 16 27 N -0.71 -10.98 5.58 -467.57 -2.61 -13.59 16 28 C 0.10 0.57 7.02 86.33 0.61 1.18 16 29 C -0.10 -0.43 6.03 29.67 0.18 -0.25 16 30 H 0.04 1.62 5.64 -2.39 -0.01 1.61 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.82 7.85 -2.38 -0.02 1.80 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 4.42 5.95 -2.39 -0.01 4.40 16 35 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 36 H 0.41 17.35 8.01 -92.70 -0.74 16.61 16 37 H 0.43 10.00 8.30 -92.71 -0.77 9.23 16 38 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 40 H 0.10 4.10 6.21 -2.91 -0.02 4.08 16 41 H 0.41 5.18 8.92 -92.71 -0.83 4.36 16 42 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.14 -0.40 8.07 -2.39 -0.02 -0.41 16 Total: -1.00 -79.38 373.49 -0.75 -80.13 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: -1.26 Total: 32.12 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 4.88 Total: 25.81 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -6.24 Total: -115.77 kcal Atomic # 8 Polarization: -66.79 SS G_CDS: -0.16 Total: -66.95 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -79.38 -0.75 -80.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615213899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.142 kcal (2) G-P(sol) polarization free energy of solvation -79.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds