Wall clock time and date at job start Wed Apr 1 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50699 * 110.53465 * 177.86950 * 4 3 2 6 6 C 1.38237 * 119.99996 * 29.72327 * 5 4 3 7 7 C 1.38236 * 119.99612 * 179.78631 * 6 5 4 8 8 C 1.38228 * 120.00263 * 0.44509 * 7 6 5 9 9 C 1.38232 * 120.00098 * 359.81333 * 8 7 6 10 10 C 1.38237 * 119.99826 * 209.99774 * 5 4 3 11 11 N 1.47314 * 110.59955 * 54.87065 * 4 3 2 12 12 C 1.34527 * 106.61955 * 241.47130 * 11 4 3 13 13 O 1.21537 * 123.76898 * 180.02562 * 12 11 4 14 14 N 1.33791 * 112.45671 * 0.02562 * 12 11 4 15 15 C 1.46505 * 124.17435 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47048 * 269.95691 * 15 14 12 17 17 O 1.21293 * 119.99913 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99867 * 180.02562 * 16 15 14 19 19 C 1.37088 * 119.99814 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00194 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99903 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99918 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99913 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46916 * 90.00113 * 23 21 19 25 25 H 1.48501 * 109.46691 * 210.00209 * 23 21 19 26 26 H 1.48496 * 109.47063 * 329.99662 * 23 21 19 27 27 C 1.34768 * 111.64834 * 359.97438 * 14 12 11 28 28 O 1.21231 * 127.15940 * 179.97438 * 27 14 12 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 33 33 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.08000 * 119.99983 * 0.02562 * 6 5 4 37 37 H 1.08004 * 119.99653 * 180.27608 * 7 6 5 38 38 H 1.08005 * 120.00161 * 179.82907 * 8 7 6 39 39 H 1.08003 * 120.00597 * 180.02562 * 9 8 7 40 40 H 1.08004 * 120.00219 * 359.97438 * 10 5 4 41 41 H 0.97004 * 126.69203 * 61.45478 * 11 4 3 42 42 H 1.08998 * 109.47438 * 29.96191 * 15 14 12 43 43 H 1.08997 * 109.46901 * 149.96260 * 15 14 12 44 44 H 0.97001 * 119.99816 * 0.02562 * 18 16 15 45 45 H 0.96997 * 119.99428 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0986 2.8528 -0.0531 6 6 3.3676 3.8861 0.5029 7 6 3.8547 5.1790 0.4586 8 6 5.0681 5.4401 -0.1497 9 6 5.7965 4.4077 -0.7104 10 6 5.3117 3.1140 -0.6623 11 7 4.0878 0.6492 -1.1288 12 6 4.7997 -0.3597 -0.5949 13 8 5.3686 -1.2077 -1.2539 14 7 4.8114 -0.3252 0.7425 15 6 5.5087 -1.3003 1.5848 16 6 4.5795 -2.4425 1.9055 17 8 3.4464 -2.4424 1.4727 18 7 5.0075 -3.4642 2.6733 19 6 4.1623 -4.5035 2.9646 20 1 3.1535 -4.5035 2.5793 21 6 4.6035 -5.5566 3.7566 22 7 3.7931 -6.5527 4.0363 23 14 6.3483 -5.5564 4.4237 24 1 6.3730 -4.8790 5.7450 25 1 6.8200 -6.9563 4.5762 26 1 7.2389 -4.8340 3.4803 27 6 4.1035 0.7178 1.2192 28 8 3.9290 1.0143 2.3816 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.4180 3.6825 0.9752 37 1 3.2857 5.9856 0.8969 38 1 5.4473 6.4507 -0.1867 39 1 6.7448 4.6115 -1.1854 40 1 5.8809 2.3073 -1.1002 41 1 3.9434 0.8208 -2.0725 42 1 6.3818 -1.6801 1.0543 43 1 5.8264 -0.8196 2.5100 44 1 5.9135 -3.4641 3.0197 45 1 4.1012 -7.2880 4.5888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731158607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:13 Heat of formation + Delta-G solvation = -44.366184 kcal Electronic energy + Delta-G solvation = -31217.099250 eV Core-core repulsion = 27007.806992 eV Total energy + Delta-G solvation = -4209.292258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.72158 -39.52508 -38.45641 -38.29477 -36.60072 -35.24432 -34.09115 -33.55610 -31.83597 -31.69463 -31.13966 -28.73695 -28.36431 -25.20093 -24.51586 -23.26157 -22.80828 -21.66134 -21.40486 -20.24390 -19.48270 -18.55562 -17.84588 -17.58973 -16.85244 -16.31627 -15.79498 -15.70458 -15.42549 -15.19298 -15.03611 -14.76648 -14.64566 -14.11211 -14.05614 -14.00017 -13.72031 -13.59286 -13.29245 -13.00090 -12.82615 -12.70443 -12.25962 -12.20665 -11.87417 -11.85668 -11.44435 -11.22992 -11.18080 -10.99939 -10.88137 -10.62578 -10.52700 -10.14123 -10.08944 -9.90068 -9.62707 -9.58111 -9.22810 -9.05515 -8.53647 -8.23837 -6.34720 -3.86505 0.89839 1.09228 1.74642 2.26710 3.01918 3.04075 3.06631 3.14603 3.17716 3.43117 3.60303 4.00016 4.07676 4.08575 4.42794 4.55873 4.68542 4.73515 4.80532 5.00839 5.05023 5.07719 5.19528 5.24590 5.28940 5.42557 5.48956 5.52640 5.57036 5.60335 5.66292 5.73983 5.77333 5.82299 5.84865 6.12528 6.17866 6.19754 6.24192 6.29750 6.51145 6.63891 6.77285 7.14783 7.45990 7.51814 8.06253 8.21594 8.52092 8.88634 9.35438 9.70522 10.77862 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003244 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.568283 B = 8628.169136 C = 9282.447375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.110 4.110 4 C 0.169 3.831 5 C -0.091 4.091 6 C -0.092 4.092 7 C -0.119 4.119 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.100 4.100 11 N -0.718 5.718 12 C 0.712 3.288 13 O -0.537 6.537 14 N -0.551 5.551 15 C 0.102 3.898 16 C 0.435 3.565 17 O -0.565 6.565 18 N -0.579 5.579 19 C -0.304 4.304 20 H 0.121 0.879 21 C 0.044 3.956 22 N -0.877 5.877 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.268 1.268 27 C 0.544 3.456 28 O -0.458 6.458 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.438 0.562 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.372 0.628 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 24.172 -9.211 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.148 4.148 4 C 0.078 3.922 5 C -0.093 4.093 6 C -0.111 4.111 7 C -0.137 4.137 8 C -0.131 4.131 9 C -0.138 4.138 10 C -0.118 4.118 11 N -0.382 5.382 12 C 0.413 3.587 13 O -0.409 6.409 14 N -0.295 5.295 15 C -0.023 4.023 16 C 0.220 3.780 17 O -0.447 6.447 18 N -0.217 5.217 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.160 4.160 22 N -0.516 5.516 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.193 1.193 27 C 0.330 3.670 28 O -0.326 6.326 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.282 0.718 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.205 0.795 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.834 23.553 -9.018 25.287 hybrid contribution 1.341 -0.243 0.225 1.381 sum 3.176 23.310 -8.793 25.115 Atomic orbital electron populations 1.21667 0.95195 1.02179 1.01100 1.21634 0.96571 0.94652 1.04343 1.21930 0.89095 0.99719 1.04074 1.20169 0.97010 0.89484 0.85552 1.19486 0.96017 0.92392 1.01388 1.21101 0.99901 0.92080 0.98004 1.21162 0.96382 0.96586 0.99578 1.21244 0.94975 0.99248 0.97597 1.21136 1.00021 0.92548 1.00061 1.21025 0.94927 0.97307 0.98580 1.45507 1.55218 1.28808 1.08711 1.15711 0.79507 0.81895 0.81572 1.91011 1.48446 1.38443 1.63035 1.45715 1.49181 1.27064 1.07587 1.21470 0.95566 0.89629 0.95651 1.19762 0.89131 0.84692 0.84426 1.90557 1.19738 1.79083 1.55339 1.42091 1.13791 1.19953 1.45912 1.19413 0.97737 0.96598 1.29558 0.86186 1.25049 0.98265 0.95498 0.97171 1.69621 1.35583 1.09392 1.37043 0.86679 0.84139 0.78787 0.79916 1.19449 1.20040 1.19295 1.20420 0.76890 0.80004 0.89728 1.90776 1.55891 1.68309 1.17653 0.92217 0.92813 0.93141 0.91462 0.90042 0.89761 0.89335 0.85088 0.85556 0.85868 0.85738 0.85836 0.71782 0.86855 0.87131 0.79482 0.91488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.13 -1.90 5.40 -26.73 -0.14 -2.04 16 3 C -0.11 -1.20 3.86 -26.73 -0.10 -1.30 16 4 C 0.17 2.05 0.95 -133.24 -0.13 1.92 16 5 C -0.09 -0.95 4.94 -104.62 -0.52 -1.47 16 6 C -0.09 -0.85 9.18 -39.58 -0.36 -1.21 16 7 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 8 C -0.11 -0.84 10.05 -39.59 -0.40 -1.24 16 9 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 10 C -0.10 -0.97 9.35 -39.58 -0.37 -1.34 16 11 N -0.72 -8.62 3.90 -54.02 -0.21 -8.84 16 12 C 0.71 11.69 8.52 -88.02 -0.75 10.94 16 13 O -0.54 -10.47 17.48 5.33 0.09 -10.38 16 14 N -0.55 -9.38 2.09 -122.02 -0.26 -9.64 16 15 C 0.10 1.80 6.18 -5.19 -0.03 1.77 16 16 C 0.44 10.08 7.85 -10.98 -0.09 10.00 16 17 O -0.56 -15.02 15.27 5.55 0.08 -14.94 16 18 N -0.58 -13.90 5.09 -10.96 -0.06 -13.96 16 19 C -0.30 -8.64 10.16 -14.94 -0.15 -8.79 16 20 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 21 C 0.04 1.20 5.50 -17.46 -0.10 1.11 16 22 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 23 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 27 C 0.54 8.77 5.75 -10.55 -0.06 8.71 16 28 O -0.46 -8.38 17.76 5.60 0.10 -8.28 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 33 H 0.08 1.51 6.51 -51.93 -0.34 1.18 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.92 6.74 -51.93 -0.35 0.57 16 36 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 37 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 40 H 0.12 1.18 7.38 -52.48 -0.39 0.80 16 41 H 0.44 4.01 8.96 -40.82 -0.37 3.65 16 42 H 0.11 1.76 7.86 -51.93 -0.41 1.35 16 43 H 0.11 1.67 8.00 -51.93 -0.42 1.25 16 44 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -35.79 379.21 -7.83 -43.62 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.74 Total: 13.93 kcal Atomic # 6 Polarization: 16.61 SS G_CDS: -3.63 Total: 12.98 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.25 Total: -57.28 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: 0.28 Total: -33.61 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.79 -7.83 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731158607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.746 kcal (2) G-P(sol) polarization free energy of solvation -35.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds