Wall clock time and date at job start Wed Apr 1 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.50699 * 110.53465 * 177.86950 * 4 3 2 6 6 C 1.38237 * 119.99996 * 29.72327 * 5 4 3 7 7 C 1.38236 * 119.99612 * 179.78631 * 6 5 4 8 8 C 1.38228 * 120.00263 * 0.44509 * 7 6 5 9 9 C 1.38232 * 120.00098 * 359.81333 * 8 7 6 10 10 C 1.38237 * 119.99826 * 209.99774 * 5 4 3 11 11 N 1.47314 * 110.59955 * 54.87065 * 4 3 2 12 12 C 1.34527 * 106.61955 * 241.47130 * 11 4 3 13 13 O 1.21537 * 123.76898 * 180.02562 * 12 11 4 14 14 N 1.33791 * 112.45671 * 0.02562 * 12 11 4 15 15 C 1.46505 * 124.17435 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47048 * 269.95691 * 15 14 12 17 17 O 1.21293 * 119.99913 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99867 * 180.02562 * 16 15 14 19 19 C 1.37088 * 119.99814 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00194 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99903 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99918 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99913 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46916 * 90.00113 * 23 21 19 25 25 H 1.48501 * 109.46691 * 210.00209 * 23 21 19 26 26 H 1.48496 * 109.47063 * 329.99662 * 23 21 19 27 27 C 1.34768 * 111.64834 * 359.97438 * 14 12 11 28 28 O 1.21231 * 127.15940 * 179.97438 * 27 14 12 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 33 33 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.08000 * 119.99983 * 0.02562 * 6 5 4 37 37 H 1.08004 * 119.99653 * 180.27608 * 7 6 5 38 38 H 1.08005 * 120.00161 * 179.82907 * 8 7 6 39 39 H 1.08003 * 120.00597 * 180.02562 * 9 8 7 40 40 H 1.08004 * 120.00219 * 359.97438 * 10 5 4 41 41 H 0.97004 * 126.69203 * 61.45478 * 11 4 3 42 42 H 1.08998 * 109.47438 * 29.96191 * 15 14 12 43 43 H 1.08997 * 109.46901 * 149.96260 * 15 14 12 44 44 H 0.97001 * 119.99816 * 0.02562 * 18 16 15 45 45 H 0.96997 * 119.99428 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0986 2.8528 -0.0531 6 6 3.3676 3.8861 0.5029 7 6 3.8547 5.1790 0.4586 8 6 5.0681 5.4401 -0.1497 9 6 5.7965 4.4077 -0.7104 10 6 5.3117 3.1140 -0.6623 11 7 4.0878 0.6492 -1.1288 12 6 4.7997 -0.3597 -0.5949 13 8 5.3686 -1.2077 -1.2539 14 7 4.8114 -0.3252 0.7425 15 6 5.5087 -1.3003 1.5848 16 6 4.5795 -2.4425 1.9055 17 8 3.4464 -2.4424 1.4727 18 7 5.0075 -3.4642 2.6733 19 6 4.1623 -4.5035 2.9646 20 1 3.1535 -4.5035 2.5793 21 6 4.6035 -5.5566 3.7566 22 7 3.7931 -6.5527 4.0363 23 14 6.3483 -5.5564 4.4237 24 1 6.3730 -4.8790 5.7450 25 1 6.8200 -6.9563 4.5762 26 1 7.2389 -4.8340 3.4803 27 6 4.1035 0.7178 1.2192 28 8 3.9290 1.0143 2.3816 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.4180 3.6825 0.9752 37 1 3.2857 5.9856 0.8969 38 1 5.4473 6.4507 -0.1867 39 1 6.7448 4.6115 -1.1854 40 1 5.8809 2.3073 -1.1002 41 1 3.9434 0.8208 -2.0725 42 1 6.3818 -1.6801 1.0543 43 1 5.8264 -0.8196 2.5100 44 1 5.9135 -3.4641 3.0197 45 1 4.1012 -7.2880 4.5888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731158607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:12 Heat of formation + Delta-G solvation = -69.710639 kcal Electronic energy + Delta-G solvation = -31218.198268 eV Core-core repulsion = 27007.806992 eV Total energy + Delta-G solvation = -4210.391276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.92224 -40.54070 -40.04002 -39.64432 -37.75510 -36.62798 -36.02062 -34.75986 -33.84803 -32.60766 -31.78458 -30.21228 -29.32156 -26.78809 -25.93530 -24.33311 -23.52744 -22.95230 -22.33284 -21.50843 -21.18536 -20.41005 -19.09993 -18.68085 -18.13184 -17.49287 -17.23556 -16.97812 -16.75318 -16.52574 -16.15582 -15.89530 -15.86809 -15.75326 -15.22991 -15.16794 -14.92603 -14.72483 -14.49918 -14.32789 -14.21994 -13.78593 -13.69874 -13.45248 -13.16189 -12.93486 -12.71351 -12.47313 -12.20849 -12.19408 -12.05392 -12.03359 -11.96343 -11.64136 -11.58133 -11.49278 -11.35610 -10.67553 -10.36946 -10.32767 -9.84612 -9.76884 -8.46648 -6.08552 0.19165 0.47467 0.51109 1.04516 1.28518 1.32299 1.42482 1.77528 1.85424 1.99684 2.19561 2.64177 2.81264 3.06079 3.08569 3.14218 3.52242 3.83474 3.92598 3.99521 4.05180 4.07508 4.11663 4.14914 4.29791 4.32250 4.41456 4.48673 4.59285 4.62080 4.70092 4.76396 4.80532 4.97690 5.12806 5.16335 5.23534 5.34318 5.46489 5.52296 5.53238 5.60844 5.71561 5.85075 5.90925 6.04557 6.23604 6.48317 6.77320 6.99508 7.26402 7.78670 8.70480 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.003244 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.568283 B = 8628.169136 C = 9282.447375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C -0.103 4.103 4 C 0.181 3.819 5 C -0.106 4.106 6 C -0.101 4.101 7 C -0.120 4.120 8 C -0.109 4.109 9 C -0.124 4.124 10 C -0.111 4.111 11 N -0.694 5.694 12 C 0.708 3.292 13 O -0.573 6.573 14 N -0.560 5.560 15 C 0.107 3.893 16 C 0.432 3.568 17 O -0.606 6.606 18 N -0.578 5.578 19 C -0.329 4.329 20 H 0.056 0.944 21 C -0.011 4.011 22 N -0.929 5.929 23 Si 0.962 3.038 24 H -0.254 1.254 25 H -0.272 1.272 26 H -0.230 1.230 27 C 0.535 3.465 28 O -0.486 6.486 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.452 0.548 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.392 0.608 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 27.856 -9.604 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C -0.141 4.141 4 C 0.090 3.910 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.138 4.138 8 C -0.127 4.127 9 C -0.141 4.141 10 C -0.129 4.129 11 N -0.359 5.359 12 C 0.409 3.591 13 O -0.449 6.449 14 N -0.305 5.305 15 C -0.018 4.018 16 C 0.219 3.781 17 O -0.491 6.491 18 N -0.219 5.219 19 C -0.458 4.458 20 H 0.074 0.926 21 C -0.210 4.210 22 N -0.569 5.569 23 Si 0.781 3.219 24 H -0.178 1.178 25 H -0.197 1.197 26 H -0.154 1.154 27 C 0.323 3.677 28 O -0.356 6.356 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.300 0.700 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.228 0.772 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.013 27.296 -9.447 29.162 hybrid contribution 0.520 -1.317 0.305 1.448 sum 4.533 25.979 -9.142 27.912 Atomic orbital electron populations 1.21651 0.93587 1.01476 1.03074 1.21543 0.98074 0.96283 1.01069 1.21970 0.88051 0.97638 1.06401 1.20171 0.97535 0.90138 0.83154 1.19334 0.96960 0.91046 1.03377 1.21283 1.00282 0.92452 0.97906 1.21489 0.96687 0.96566 0.99076 1.21621 0.94531 1.00348 0.96206 1.21407 1.00836 0.91994 0.99903 1.21085 0.94753 0.98104 0.98992 1.45389 1.53558 1.27378 1.09587 1.15865 0.79642 0.82254 0.81315 1.90978 1.50276 1.40071 1.63617 1.45882 1.49495 1.27112 1.07961 1.21494 0.94584 0.87999 0.97749 1.20891 0.89368 0.85336 0.82551 1.90548 1.22092 1.80090 1.56358 1.41883 1.14147 1.19289 1.46623 1.18965 0.96401 0.99199 1.31244 0.92588 1.26120 1.04323 0.94017 0.96555 1.69795 1.38728 1.10441 1.37928 0.85413 0.76873 0.79517 0.80101 1.17839 1.19697 1.15362 1.21167 0.76149 0.79802 0.90619 1.90743 1.56766 1.69072 1.19047 0.94330 0.92003 0.89912 0.92810 0.95270 0.85947 0.88344 0.84349 0.83183 0.83240 0.83875 0.86372 0.70027 0.84224 0.84049 0.77229 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.13 -3.82 5.40 30.60 0.17 -3.66 16 3 C -0.10 -2.10 3.86 30.60 0.12 -1.98 16 4 C 0.18 4.20 0.95 2.24 0.00 4.20 16 5 C -0.11 -1.99 4.94 -19.87 -0.10 -2.08 16 6 C -0.10 -1.58 9.18 22.27 0.20 -1.37 16 7 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 8 C -0.11 -1.21 10.05 22.27 0.22 -0.98 16 9 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 10 C -0.11 -1.91 9.35 22.27 0.21 -1.70 16 11 N -0.69 -16.27 3.90 -443.25 -1.73 -18.00 16 12 C 0.71 23.41 8.52 179.44 1.53 24.94 16 13 O -0.57 -22.69 17.48 -3.83 -0.07 -22.76 16 14 N -0.56 -19.21 2.09 -777.20 -1.63 -20.83 16 15 C 0.11 3.73 6.18 85.63 0.53 4.26 16 16 C 0.43 20.68 7.85 87.66 0.69 21.37 16 17 O -0.61 -34.45 15.27 -3.07 -0.05 -34.50 16 18 N -0.58 -28.32 5.09 -306.98 -1.56 -29.88 16 19 C -0.33 -19.70 10.16 84.04 0.85 -18.85 16 20 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.93 -56.59 13.96 21.66 0.30 -56.29 16 23 Si 0.96 39.31 27.74 68.60 1.90 41.22 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 27 C 0.53 17.27 5.75 87.94 0.51 17.78 16 28 O -0.49 -17.92 17.76 -2.88 -0.05 -17.97 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 1.66 7.53 -2.39 -0.02 1.64 16 33 H 0.03 1.15 6.51 -2.39 -0.02 1.13 16 34 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.88 6.74 -2.39 -0.02 1.87 16 36 H 0.14 1.88 6.30 -2.91 -0.02 1.86 16 37 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 38 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.12 2.09 7.38 -2.91 -0.02 2.07 16 41 H 0.45 7.77 8.96 -92.71 -0.83 6.94 16 42 H 0.14 4.14 7.86 -2.39 -0.02 4.12 16 43 H 0.14 4.04 8.00 -2.39 -0.02 4.03 16 44 H 0.39 15.82 5.76 -92.71 -0.53 15.28 16 45 H 0.28 15.60 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -86.27 379.21 3.31 -82.96 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -0.37 Total: 39.57 kcal Atomic # 6 Polarization: 29.93 SS G_CDS: 6.56 Total: 36.48 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -4.62 Total: -125.00 kcal Atomic # 8 Polarization: -75.06 SS G_CDS: -0.16 Total: -75.23 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.90 Total: 41.22 kcal Total: -86.27 3.31 -82.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731158607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.251 kcal (2) G-P(sol) polarization free energy of solvation -86.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds