Wall clock time and date at job start Wed Apr 1 2020 03:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46996 * 2 1 4 4 N 1.46507 * 109.46844 * 179.97438 * 3 2 1 5 5 N 1.40445 * 126.82338 * 89.97539 * 4 3 2 6 6 C 1.30707 * 106.79159 * 180.02562 * 5 4 3 7 7 N 1.33232 * 108.94927 * 0.23934 * 6 5 4 8 8 C 1.30836 * 109.82852 * 359.59333 * 7 6 5 9 9 C 1.50706 * 125.96080 * 180.12220 * 8 7 6 10 10 O 1.45196 * 109.46805 * 270.32729 * 9 8 7 11 11 C 1.34233 * 116.99500 * 180.02562 * 10 9 8 12 12 O 1.20829 * 120.00337 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.50698 * 109.47625 * 179.97438 * 13 11 10 15 15 C 1.38302 * 119.92969 * 269.73025 * 14 13 11 16 16 C 1.38103 * 120.06642 * 179.72526 * 15 14 13 17 17 C 1.38879 * 119.92724 * 0.56136 * 16 15 14 18 18 O 1.35758 * 120.06512 * 179.68593 * 17 16 15 19 19 C 1.34830 * 116.99812 * 174.48939 * 18 17 16 20 20 H 1.08000 * 120.00200 * 5.05491 * 19 18 17 21 21 C 1.38657 * 120.00022 * 185.05467 * 19 18 17 22 22 N 1.31554 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46978 * 60.00076 * 23 21 19 25 25 H 1.48494 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47058 * 300.00702 * 23 21 19 27 27 C 1.38873 * 119.86459 * 359.71248 * 17 16 15 28 28 C 1.38102 * 119.93473 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.46923 * 60.00563 * 1 2 3 30 30 H 1.08999 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47572 * 300.00435 * 1 2 3 32 32 H 1.08992 * 109.47244 * 239.99411 * 2 1 3 33 33 H 1.09003 * 109.46923 * 119.99436 * 2 1 3 34 34 H 1.08997 * 109.47609 * 60.00119 * 3 2 1 35 35 H 1.09003 * 109.46824 * 299.99497 * 3 2 1 36 36 H 1.08001 * 125.52132 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.46972 * 30.33296 * 9 8 7 38 38 H 1.09003 * 109.46457 * 150.32598 * 9 8 7 39 39 H 1.09006 * 109.47129 * 299.99852 * 13 11 10 40 40 H 1.09005 * 109.46912 * 59.99456 * 13 11 10 41 41 H 1.07998 * 119.96485 * 359.96688 * 15 14 13 42 42 H 1.07998 * 120.03283 * 180.26845 * 16 15 14 43 43 H 0.96998 * 120.00176 * 179.97438 * 22 21 19 44 44 H 1.08008 * 120.03669 * 179.97438 * 27 17 16 45 45 H 1.07996 * 119.96964 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3473 1.4418 -1.1233 6 6 5.5751 1.4414 -0.6750 7 7 5.5493 1.4366 0.6570 8 6 4.3102 1.4425 1.0770 9 6 3.8636 1.4424 2.5164 10 8 3.7203 0.0734 2.9785 11 6 3.3255 -0.1025 4.2493 12 8 3.1073 0.8557 4.9524 13 6 3.1554 -1.4950 4.7996 14 6 2.7093 -1.4163 6.2369 15 6 3.6497 -1.3853 7.2506 16 6 3.2441 -1.3074 8.5684 17 6 1.8902 -1.2720 8.8758 18 8 1.4883 -1.2019 10.1706 19 6 0.1668 -1.0557 10.3943 20 1 -0.5270 -1.0815 9.5670 21 6 -0.3015 -0.8721 11.6864 22 7 0.5436 -0.8401 12.6940 23 14 -2.1324 -0.6687 11.9962 24 1 -2.8519 -1.8782 11.5222 25 1 -2.3713 -0.4894 13.4508 26 1 -2.6294 0.5224 11.2617 27 6 0.9484 -1.3091 7.8559 28 6 1.3603 -1.3804 6.5397 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 6.4660 1.4405 -1.2855 37 1 4.6059 1.9564 3.1271 38 1 2.9059 1.9562 2.5996 39 1 2.4055 -2.0278 4.2148 40 1 4.1054 -2.0266 4.7430 41 1 4.7022 -1.4181 7.0111 42 1 3.9790 -1.2789 9.3593 43 1 0.2161 -0.7113 13.5979 44 1 -0.1053 -1.2821 8.0918 45 1 0.6284 -1.4088 5.7461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789701376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:45 Heat of formation + Delta-G solvation = -0.724922 kcal Electronic energy + Delta-G solvation = -28734.359408 eV Core-core repulsion = 24526.959577 eV Total energy + Delta-G solvation = -4207.399831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56563 -40.57353 -39.02653 -37.10420 -36.34097 -36.15202 -32.70846 -32.49603 -32.39577 -31.50444 -30.22015 -28.40457 -27.07403 -26.47113 -25.17481 -22.90394 -22.11397 -22.04104 -21.90926 -20.76008 -20.25434 -18.04364 -17.83058 -17.75329 -17.02508 -16.72361 -16.39002 -15.88014 -15.77312 -14.95742 -14.84003 -14.64957 -14.39771 -14.26302 -13.91215 -13.78570 -13.57033 -13.50369 -13.12774 -12.84454 -12.75725 -12.64712 -12.59835 -12.12971 -11.99343 -11.94375 -11.59895 -11.31792 -11.31666 -10.99711 -10.95060 -10.84203 -10.69579 -10.53853 -10.47259 -10.41065 -10.13900 -10.00581 -9.38146 -8.86302 -8.21875 -7.25062 -6.48345 -4.07087 0.94937 1.77373 2.04794 2.18890 2.21798 2.40977 2.91322 3.10859 3.12706 3.15115 3.62706 3.93876 3.95427 4.21219 4.29767 4.43436 4.48719 4.62289 4.69841 4.81040 4.87968 4.97492 5.04623 5.08082 5.15470 5.17171 5.24906 5.25664 5.51640 5.53891 5.56807 5.64692 5.71906 5.78504 5.86304 6.01837 6.15136 6.18693 6.30371 6.35635 6.64276 6.85078 6.99844 7.17429 7.28655 7.39627 7.66556 7.71816 7.77172 7.96308 8.96847 9.66071 10.69315 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.001982 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.458869 B =14121.441292 C =15041.819615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.123 3.877 4 N -0.361 5.361 5 N -0.312 5.312 6 C 0.199 3.801 7 N -0.522 5.522 8 C 0.276 3.724 9 C 0.147 3.853 10 O -0.357 6.357 11 C 0.459 3.541 12 O -0.484 6.484 13 C -0.047 4.047 14 C -0.187 4.187 15 C -0.055 4.055 16 C -0.191 4.191 17 C 0.160 3.840 18 O -0.174 6.174 19 C -0.393 4.393 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.234 4.234 28 C -0.052 4.052 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.221 0.779 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.271 0.729 44 H 0.128 0.872 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 2.045 -25.691 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.001 3.999 4 N -0.153 5.153 5 N -0.140 5.140 6 C -0.104 4.104 7 N -0.251 5.251 8 C -0.001 4.001 9 C 0.070 3.930 10 O -0.274 6.274 11 C 0.301 3.699 12 O -0.368 6.368 13 C -0.084 4.084 14 C -0.188 4.188 15 C -0.073 4.073 16 C -0.211 4.211 17 C 0.105 3.895 18 O -0.077 6.077 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.253 4.253 28 C -0.070 4.070 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.145 0.855 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.890 2.390 -25.525 25.799 hybrid contribution -1.037 0.334 0.147 1.099 sum 1.854 2.724 -25.378 25.591 Atomic orbital electron populations 1.21701 0.93768 1.02961 1.02356 1.21938 0.97134 0.94890 1.03979 1.22038 0.73209 0.99584 1.05086 1.50490 1.07971 1.53162 1.03720 1.78073 1.02125 1.25749 1.08058 1.26023 0.95888 0.98289 0.90157 1.70481 1.19269 1.23544 1.11801 1.23638 0.86530 0.98412 0.91473 1.20969 1.03087 0.83149 0.85787 1.86572 1.79926 1.29397 1.31523 1.24370 0.73151 0.93926 0.78503 1.90738 1.45048 1.42768 1.58285 1.20114 1.04476 0.89305 0.94546 1.18604 0.93780 1.14789 0.91578 1.20439 0.97760 0.97371 0.91774 1.20171 0.93432 1.11268 0.96200 1.19410 0.92883 0.91886 0.85287 1.83981 1.26884 1.77648 1.19224 1.21292 0.79735 1.51622 0.94226 0.89045 1.25307 1.00436 0.96416 0.94354 1.70026 1.34770 1.45146 0.99562 0.85772 0.80463 0.79208 0.77946 1.19474 1.20247 1.19468 1.21102 1.00173 1.11646 0.92384 1.20514 0.94167 0.96767 0.95598 0.92252 0.91553 0.92029 0.90850 0.90525 0.88333 0.88013 0.76250 0.87202 0.88889 0.87742 0.87524 0.87093 0.86358 0.91892 0.85459 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.14 -0.89 6.26 -26.73 -0.17 -1.06 16 3 C 0.12 0.79 6.30 -4.04 -0.03 0.77 16 4 N -0.36 -3.48 3.64 -58.34 -0.21 -3.70 16 5 N -0.31 -3.31 12.70 29.29 0.37 -2.94 16 6 C 0.20 1.94 13.03 -91.83 -1.20 0.75 16 7 N -0.52 -6.13 11.19 -11.97 -0.13 -6.26 16 8 C 0.28 2.95 7.62 -155.69 -1.19 1.76 16 9 C 0.15 1.46 5.78 36.01 0.21 1.67 16 10 O -0.36 -4.02 10.20 -39.26 -0.40 -4.42 16 11 C 0.46 5.93 7.95 36.00 0.29 6.22 16 12 O -0.48 -7.96 15.78 -18.75 -0.30 -8.26 16 13 C -0.05 -0.55 5.94 -29.04 -0.17 -0.72 16 14 C -0.19 -3.02 4.38 -104.58 -0.46 -3.48 16 15 C -0.06 -0.96 9.69 -39.61 -0.38 -1.35 16 16 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 17 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.17 -4.94 9.76 0.02 0.00 -4.94 16 19 C -0.39 -10.86 9.49 30.89 0.29 -10.56 16 20 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 23 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 27 C -0.23 -4.98 9.17 -39.40 -0.36 -5.34 16 28 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.49 7.11 -51.93 -0.37 0.12 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.22 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.11 1.11 8.13 -51.93 -0.42 0.69 16 38 H 0.09 0.76 7.12 -51.93 -0.37 0.39 16 39 H 0.10 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.13 2.70 5.64 -52.48 -0.30 2.40 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -34.70 393.92 -8.86 -43.56 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.93 Total: 2.94 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.93 Total: -12.88 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.78 Total: -37.17 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.70 Total: -17.62 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.70 -8.86 -43.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789701376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.832 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds