Wall clock time and date at job start Wed Apr 1 2020 03:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46996 * 2 1 4 4 N 1.46507 * 109.46844 * 179.97438 * 3 2 1 5 5 N 1.40445 * 126.82338 * 89.97539 * 4 3 2 6 6 C 1.30707 * 106.79159 * 180.02562 * 5 4 3 7 7 N 1.33232 * 108.94927 * 0.23934 * 6 5 4 8 8 C 1.30836 * 109.82852 * 359.59333 * 7 6 5 9 9 C 1.50706 * 125.96080 * 180.12220 * 8 7 6 10 10 O 1.45196 * 109.46805 * 270.32729 * 9 8 7 11 11 C 1.34233 * 116.99500 * 180.02562 * 10 9 8 12 12 O 1.20829 * 120.00337 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.50698 * 109.47625 * 179.97438 * 13 11 10 15 15 C 1.38302 * 119.92969 * 269.73025 * 14 13 11 16 16 C 1.38103 * 120.06642 * 179.72526 * 15 14 13 17 17 C 1.38879 * 119.92724 * 0.56136 * 16 15 14 18 18 O 1.35758 * 120.06512 * 179.68593 * 17 16 15 19 19 C 1.34830 * 116.99812 * 174.48939 * 18 17 16 20 20 H 1.08000 * 120.00200 * 5.05491 * 19 18 17 21 21 C 1.38657 * 120.00022 * 185.05467 * 19 18 17 22 22 N 1.31554 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46978 * 60.00076 * 23 21 19 25 25 H 1.48494 * 109.46972 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47058 * 300.00702 * 23 21 19 27 27 C 1.38873 * 119.86459 * 359.71248 * 17 16 15 28 28 C 1.38102 * 119.93473 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.46923 * 60.00563 * 1 2 3 30 30 H 1.08999 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47572 * 300.00435 * 1 2 3 32 32 H 1.08992 * 109.47244 * 239.99411 * 2 1 3 33 33 H 1.09003 * 109.46923 * 119.99436 * 2 1 3 34 34 H 1.08997 * 109.47609 * 60.00119 * 3 2 1 35 35 H 1.09003 * 109.46824 * 299.99497 * 3 2 1 36 36 H 1.08001 * 125.52132 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.46972 * 30.33296 * 9 8 7 38 38 H 1.09003 * 109.46457 * 150.32598 * 9 8 7 39 39 H 1.09006 * 109.47129 * 299.99852 * 13 11 10 40 40 H 1.09005 * 109.46912 * 59.99456 * 13 11 10 41 41 H 1.07998 * 119.96485 * 359.96688 * 15 14 13 42 42 H 1.07998 * 120.03283 * 180.26845 * 16 15 14 43 43 H 0.96998 * 120.00176 * 179.97438 * 22 21 19 44 44 H 1.08008 * 120.03669 * 179.97438 * 27 17 16 45 45 H 1.07996 * 119.96964 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 7 4.3473 1.4418 -1.1233 6 6 5.5751 1.4414 -0.6750 7 7 5.5493 1.4366 0.6570 8 6 4.3102 1.4425 1.0770 9 6 3.8636 1.4424 2.5164 10 8 3.7203 0.0734 2.9785 11 6 3.3255 -0.1025 4.2493 12 8 3.1073 0.8557 4.9524 13 6 3.1554 -1.4950 4.7996 14 6 2.7093 -1.4163 6.2369 15 6 3.6497 -1.3853 7.2506 16 6 3.2441 -1.3074 8.5684 17 6 1.8902 -1.2720 8.8758 18 8 1.4883 -1.2019 10.1706 19 6 0.1668 -1.0557 10.3943 20 1 -0.5270 -1.0815 9.5670 21 6 -0.3015 -0.8721 11.6864 22 7 0.5436 -0.8401 12.6940 23 14 -2.1324 -0.6687 11.9962 24 1 -2.8519 -1.8782 11.5222 25 1 -2.3713 -0.4894 13.4508 26 1 -2.6294 0.5224 11.2617 27 6 0.9484 -1.3091 7.8559 28 6 1.3603 -1.3804 6.5397 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 6.4660 1.4405 -1.2855 37 1 4.6059 1.9564 3.1271 38 1 2.9059 1.9562 2.5996 39 1 2.4055 -2.0278 4.2148 40 1 4.1054 -2.0266 4.7430 41 1 4.7022 -1.4181 7.0111 42 1 3.9790 -1.2789 9.3593 43 1 0.2161 -0.7113 13.5979 44 1 -0.1053 -1.2821 8.0918 45 1 0.6284 -1.4088 5.7461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789701376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:44 Heat of formation + Delta-G solvation = -20.125644 kcal Electronic energy + Delta-G solvation = -28735.200687 eV Core-core repulsion = 24526.959577 eV Total energy + Delta-G solvation = -4208.241109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30165 -41.62541 -40.66598 -38.53272 -37.52635 -36.78072 -34.41305 -33.44239 -33.09048 -32.82292 -31.77900 -29.34085 -28.14885 -27.41059 -26.89877 -23.64066 -23.50182 -23.19161 -22.68769 -21.61724 -21.44925 -19.84586 -18.86897 -18.79466 -18.44332 -17.67967 -17.29504 -16.67805 -16.43106 -16.33297 -16.27173 -15.90086 -15.59900 -15.48209 -15.25659 -14.98097 -14.64578 -14.39950 -14.38070 -14.11325 -13.80838 -13.61761 -13.57540 -13.13364 -12.95465 -12.88609 -12.76656 -12.49006 -12.43385 -12.33652 -12.27357 -12.14043 -11.93034 -11.75301 -11.62056 -11.18693 -11.17295 -10.90985 -10.78268 -10.72057 -9.76118 -8.94014 -8.46446 -6.14718 0.16154 0.62240 0.63137 1.12672 1.21536 1.35352 1.45102 1.51857 1.54478 2.05335 2.18524 2.79649 2.92029 3.19005 3.37323 3.52149 3.56405 3.74727 3.79880 3.87423 3.96461 4.04502 4.16218 4.19255 4.21808 4.24765 4.44362 4.46970 4.52528 4.59269 4.69453 4.76649 4.80259 5.04770 5.06160 5.09448 5.15001 5.19652 5.25221 5.31752 5.32203 5.36491 5.56213 5.62474 5.72194 5.74498 6.03388 6.22429 6.73170 6.92690 6.97964 7.78841 8.76523 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.001982 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.458869 B =14121.441292 C =15041.819615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.114 3.886 4 N -0.359 5.359 5 N -0.331 5.331 6 C 0.196 3.804 7 N -0.551 5.551 8 C 0.268 3.732 9 C 0.147 3.853 10 O -0.351 6.351 11 C 0.470 3.530 12 O -0.525 6.525 13 C -0.047 4.047 14 C -0.159 4.159 15 C -0.053 4.053 16 C -0.208 4.208 17 C 0.116 3.884 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.103 0.897 21 C -0.025 4.025 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.255 1.255 25 H -0.273 1.273 26 H -0.258 1.258 27 C -0.245 4.245 28 C -0.052 4.052 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.251 0.749 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.112 0.888 43 H 0.272 0.728 44 H 0.120 0.880 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 1.769 -29.462 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.006 4.006 4 N -0.151 5.151 5 N -0.159 5.159 6 C -0.106 4.106 7 N -0.280 5.280 8 C -0.009 4.009 9 C 0.071 3.929 10 O -0.267 6.267 11 C 0.314 3.686 12 O -0.413 6.413 13 C -0.084 4.084 14 C -0.160 4.160 15 C -0.071 4.071 16 C -0.227 4.227 17 C 0.065 3.935 18 O -0.139 6.139 19 C -0.490 4.490 20 H 0.120 0.880 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.179 1.179 25 H -0.197 1.197 26 H -0.183 1.183 27 C -0.264 4.264 28 C -0.069 4.069 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.138 0.862 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.262 2.094 -29.385 29.546 hybrid contribution -0.604 0.404 0.885 1.145 sum 1.658 2.498 -28.500 28.657 Atomic orbital electron populations 1.21683 0.92565 1.03189 1.03000 1.21856 0.98023 0.94430 1.02878 1.22353 0.71660 1.00076 1.06552 1.50688 1.08873 1.52331 1.03188 1.78039 1.02647 1.26408 1.08828 1.26669 0.96720 0.97303 0.89879 1.70468 1.20141 1.24519 1.12885 1.23688 0.86671 0.98698 0.91826 1.21085 1.04043 0.82435 0.85377 1.86539 1.79350 1.30249 1.30524 1.24357 0.72048 0.93666 0.78542 1.90756 1.47084 1.44094 1.59318 1.20242 1.07339 0.89361 0.91427 1.19148 0.92963 1.09735 0.94112 1.20909 1.00148 0.95666 0.90360 1.20439 0.92380 1.11832 0.98049 1.19989 0.94690 0.93902 0.84879 1.83946 1.27229 1.81016 1.21694 1.21795 0.80252 1.51862 0.95066 0.87988 1.26621 1.05940 0.95898 0.93753 1.70181 1.37379 1.48260 1.00068 0.84643 0.73686 0.79875 0.77991 1.17908 1.19725 1.18261 1.21243 0.99488 1.11993 0.93647 1.20966 0.95956 0.95212 0.94811 0.91404 0.91540 0.91617 0.91990 0.91517 0.86613 0.86886 0.73298 0.87540 0.87026 0.83967 0.84293 0.83403 0.87020 0.91856 0.86222 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 71.98 0.71 -0.33 16 2 C -0.13 -1.36 6.26 30.59 0.19 -1.17 16 3 C 0.11 1.19 6.30 86.38 0.54 1.73 16 4 N -0.36 -6.15 3.64 -338.47 -1.23 -7.38 16 5 N -0.33 -6.42 12.70 -61.25 -0.78 -7.20 16 6 C 0.20 3.48 13.03 180.77 2.36 5.83 16 7 N -0.55 -11.96 11.19 -191.78 -2.15 -14.11 16 8 C 0.27 5.16 7.62 138.23 1.05 6.21 16 9 C 0.15 2.56 5.78 71.24 0.41 2.97 16 10 O -0.35 -6.60 10.20 -51.45 -0.52 -7.12 16 11 C 0.47 10.21 7.95 71.24 0.57 10.77 16 12 O -0.53 -15.71 15.78 21.95 0.35 -15.36 16 13 C -0.05 -0.84 5.94 29.10 0.17 -0.67 16 14 C -0.16 -4.54 4.38 -19.83 -0.09 -4.63 16 15 C -0.05 -1.72 9.69 22.25 0.22 -1.51 16 16 C -0.21 -8.87 9.99 22.39 0.22 -8.65 16 17 C 0.12 5.78 6.65 22.58 0.15 5.93 16 18 O -0.23 -14.08 9.76 -22.84 -0.22 -14.31 16 19 C -0.41 -24.14 9.49 67.92 0.64 -23.49 16 20 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 22 N -0.92 -56.82 13.67 21.61 0.30 -56.53 16 23 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 24 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 27 C -0.24 -10.45 9.17 22.39 0.21 -10.25 16 28 C -0.05 -1.67 9.69 22.25 0.22 -1.45 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.12 0.79 7.11 -2.39 -0.02 0.78 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.25 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.11 1.95 8.13 -2.39 -0.02 1.94 16 38 H 0.11 1.51 7.12 -2.39 -0.02 1.49 16 39 H 0.14 1.65 8.09 -2.38 -0.02 1.63 16 40 H 0.14 1.77 8.08 -2.38 -0.02 1.75 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 45 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -82.03 393.92 6.83 -75.20 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.02 Total: 21.68 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 8.04 Total: -19.62 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.86 Total: -85.21 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.40 Total: -36.80 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -82.03 6.83 -75.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789701376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.078 kcal (2) G-P(sol) polarization free energy of solvation -82.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds