Wall clock time and date at job start Wed Apr 1 2020 03:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46958 * 2 1 4 4 N 1.46502 * 109.47220 * 180.02562 * 3 2 1 5 5 N 1.40448 * 126.82457 * 89.97133 * 4 3 2 6 6 C 1.30711 * 106.78956 * 180.02562 * 5 4 3 7 7 N 1.33232 * 108.95030 * 0.24111 * 6 5 4 8 8 C 1.30839 * 109.82905 * 359.59406 * 7 6 5 9 9 C 1.50704 * 125.96053 * 180.12400 * 8 7 6 10 10 O 1.45202 * 109.46828 * 270.32517 * 9 8 7 11 11 C 1.34230 * 116.99626 * 180.02562 * 10 9 8 12 12 O 1.20826 * 119.99883 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99844 * 180.02562 * 11 10 9 14 14 C 1.50700 * 109.47117 * 179.97438 * 13 11 10 15 15 C 1.38321 * 119.96640 * 269.72567 * 14 13 11 16 16 C 1.38279 * 120.13667 * 179.76708 * 15 14 13 17 17 C 1.38125 * 120.07021 * 0.50831 * 16 15 14 18 18 C 1.38857 * 119.92882 * 359.74535 * 17 16 15 19 19 O 1.35746 * 120.06982 * 179.97438 * 18 17 16 20 20 C 1.34834 * 116.99970 * 354.48637 * 19 18 17 21 21 H 1.08001 * 119.99634 * 5.05522 * 20 19 18 22 22 C 1.38650 * 120.00221 * 185.06060 * 20 19 18 23 23 N 1.31565 * 119.99867 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00294 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47199 * 89.99655 * 24 22 20 26 26 H 1.48504 * 109.47385 * 210.00128 * 24 22 20 27 27 H 1.48504 * 109.47211 * 329.99629 * 24 22 20 28 28 C 1.38079 * 119.96355 * 89.99874 * 14 13 11 29 29 H 1.08997 * 109.47280 * 59.99873 * 1 2 3 30 30 H 1.09001 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47012 * 299.99914 * 1 2 3 32 32 H 1.08998 * 109.47012 * 240.00086 * 2 1 3 33 33 H 1.08997 * 109.47280 * 120.00126 * 2 1 3 34 34 H 1.09003 * 109.47625 * 60.00040 * 3 2 1 35 35 H 1.09008 * 109.47098 * 299.99649 * 3 2 1 36 36 H 1.08005 * 125.52224 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47148 * 30.32996 * 9 8 7 38 38 H 1.09001 * 109.46770 * 150.32741 * 9 8 7 39 39 H 1.08994 * 109.47298 * 300.00262 * 13 11 10 40 40 H 1.09007 * 109.46736 * 59.99909 * 13 11 10 41 41 H 1.07997 * 119.93158 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.96554 * 180.25932 * 16 15 14 43 43 H 1.07998 * 120.03556 * 179.77127 * 17 16 15 44 44 H 0.96999 * 119.99705 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.03367 * 359.95917 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3464 1.4422 -1.1252 6 6 5.5746 1.4418 -0.6779 7 7 5.5499 1.4367 0.6542 8 6 4.3111 1.4423 1.0751 9 6 3.8657 1.4419 2.5149 10 8 3.7229 0.0727 2.9768 11 6 3.3291 -0.1035 4.2479 12 8 3.1114 0.8545 4.9512 13 6 3.1596 -1.4963 4.7979 14 6 2.7147 -1.4179 6.2356 15 6 3.6553 -1.3871 7.2492 16 6 3.2511 -1.3104 8.5694 17 6 1.9057 -1.2748 8.8803 18 6 0.9589 -1.3109 7.8653 19 8 -0.3640 -1.2766 8.1676 20 6 -0.6948 -1.3230 9.4739 21 1 0.0783 -1.3021 10.2277 22 6 -2.0274 -1.3978 9.8494 23 7 -2.9692 -1.4228 8.9311 24 14 -2.4857 -1.4614 11.6591 25 1 -2.6766 -0.0802 12.1703 26 1 -3.7463 -2.2289 11.8239 27 1 -1.3985 -2.1257 12.4221 28 6 1.3683 -1.3826 6.5399 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8901 36 1 6.4650 1.4411 -1.2892 37 1 4.6084 1.9557 3.1251 38 1 2.9080 1.9555 2.5990 39 1 2.4094 -2.0290 4.2135 40 1 4.1096 -2.0277 4.7404 41 1 4.7077 -1.4189 7.0089 42 1 3.9880 -1.2823 9.3585 43 1 1.5906 -1.2186 9.9118 44 1 -3.9014 -1.4755 9.1938 45 1 0.6343 -1.4105 5.7482 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791042019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:48 Heat of formation + Delta-G solvation = -19.530537 kcal Electronic energy + Delta-G solvation = -28933.094878 eV Core-core repulsion = 24724.879574 eV Total energy + Delta-G solvation = -4208.215304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.31412 -41.69273 -40.66698 -38.51387 -37.58223 -36.80487 -34.34835 -33.73892 -33.14993 -33.10377 -30.93607 -29.51829 -28.29430 -27.41370 -27.15677 -23.56915 -23.49716 -23.13923 -22.71209 -21.85799 -21.48611 -19.50626 -18.87545 -18.82815 -18.40764 -17.71775 -17.30915 -16.73558 -16.62835 -16.42693 -16.25647 -16.09750 -15.63339 -15.46770 -15.25823 -15.00752 -14.63191 -14.41356 -14.32017 -14.08083 -13.80670 -13.65858 -13.57153 -13.16240 -12.97279 -12.92849 -12.78183 -12.49182 -12.46906 -12.42153 -12.22998 -12.10637 -11.96941 -11.78676 -11.69651 -11.20282 -11.19840 -10.91925 -10.79720 -10.74775 -9.68749 -8.98687 -8.46128 -6.14159 0.11991 0.49148 0.75313 1.10494 1.14477 1.35639 1.43852 1.51361 1.52859 2.02402 2.18368 2.78685 2.90238 3.18427 3.36018 3.40823 3.54414 3.69870 3.76974 3.85585 3.92052 4.09660 4.13287 4.18485 4.19722 4.31014 4.39042 4.44344 4.50165 4.55848 4.61590 4.72615 4.74647 5.01345 5.03082 5.06041 5.13309 5.16935 5.19710 5.29826 5.31028 5.35230 5.59988 5.63464 5.71383 5.74637 6.03558 6.22014 6.65371 6.91315 6.98898 7.79644 8.77119 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002180 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.001043 B =12839.820912 C =14156.705939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.359 5.359 5 N -0.330 5.330 6 C 0.197 3.803 7 N -0.547 5.547 8 C 0.268 3.732 9 C 0.147 3.853 10 O -0.349 6.349 11 C 0.475 3.525 12 O -0.523 6.523 13 C -0.061 4.061 14 C -0.037 4.037 15 C -0.176 4.176 16 C -0.074 4.074 17 C -0.242 4.242 18 C 0.111 3.889 19 O -0.232 6.232 20 C -0.412 4.412 21 H 0.101 0.899 22 C -0.023 4.023 23 N -0.921 5.921 24 Si 1.017 2.983 25 H -0.265 1.265 26 H -0.271 1.271 27 H -0.253 1.253 28 C -0.185 4.185 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.253 0.747 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.240 2.850 -17.278 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.006 4.006 4 N -0.151 5.151 5 N -0.159 5.159 6 C -0.105 4.105 7 N -0.277 5.277 8 C -0.009 4.009 9 C 0.070 3.930 10 O -0.265 6.265 11 C 0.318 3.682 12 O -0.410 6.410 13 C -0.097 4.097 14 C -0.038 4.038 15 C -0.194 4.194 16 C -0.092 4.092 17 C -0.261 4.261 18 C 0.061 3.939 19 O -0.139 6.139 20 C -0.488 4.488 21 H 0.118 0.882 22 C -0.220 4.220 23 N -0.559 5.559 24 Si 0.837 3.163 25 H -0.190 1.190 26 H -0.195 1.195 27 H -0.176 1.176 28 C -0.204 4.204 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.269 0.731 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.761 3.165 -17.796 22.717 hybrid contribution -0.786 0.264 0.899 1.223 sum 12.974 3.429 -16.897 21.578 Atomic orbital electron populations 1.21690 0.92851 1.03114 1.02944 1.21846 0.97804 0.94616 1.02874 1.22322 0.71799 0.99895 1.06548 1.50673 1.08809 1.52341 1.03299 1.78048 1.02700 1.26408 1.08728 1.26702 0.96691 0.97213 0.89891 1.70468 1.19923 1.24468 1.12827 1.23661 0.86723 0.98780 0.91744 1.21111 1.04090 0.82198 0.85571 1.86524 1.79295 1.30493 1.30206 1.24006 0.72156 0.93215 0.78785 1.90755 1.46869 1.43972 1.59414 1.20390 1.07688 0.90145 0.91506 1.19076 0.91375 0.98592 0.94706 1.21015 0.99777 1.06762 0.91882 1.21136 0.94072 0.96330 0.97618 1.21343 0.94330 1.11329 0.99104 1.19863 0.84551 0.94537 0.94939 1.83933 1.19640 1.81955 1.28375 1.21801 0.93689 1.52883 0.80473 0.88212 1.26560 0.94062 0.95938 1.05483 1.70182 1.00930 1.48938 1.35843 0.84605 0.78561 0.79119 0.74052 1.18970 1.19534 1.17643 1.20228 0.96388 1.10634 0.93173 0.91073 0.91723 0.92057 0.91661 0.91782 0.86830 0.86696 0.73109 0.86998 0.87360 0.84711 0.82914 0.83261 0.83667 0.86442 0.91879 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -1.83 6.26 30.60 0.19 -1.64 16 3 C 0.11 1.52 6.30 86.38 0.54 2.07 16 4 N -0.36 -6.84 3.64 -338.47 -1.23 -8.07 16 5 N -0.33 -6.83 12.70 -61.25 -0.78 -7.61 16 6 C 0.20 3.63 13.03 180.77 2.36 5.99 16 7 N -0.55 -12.26 11.19 -191.77 -2.15 -14.41 16 8 C 0.27 5.54 7.62 138.23 1.05 6.59 16 9 C 0.15 2.81 5.78 71.24 0.41 3.22 16 10 O -0.35 -7.38 10.20 -51.41 -0.52 -7.91 16 11 C 0.47 11.64 7.95 71.24 0.57 12.21 16 12 O -0.52 -16.91 15.78 21.96 0.35 -16.57 16 13 C -0.06 -1.29 5.94 29.10 0.17 -1.11 16 14 C -0.04 -1.18 4.37 -19.88 -0.09 -1.27 16 15 C -0.18 -5.28 9.70 22.30 0.22 -5.06 16 16 C -0.07 -2.50 10.04 22.25 0.22 -2.28 16 17 C -0.24 -10.55 9.17 22.39 0.21 -10.34 16 18 C 0.11 5.53 6.65 22.58 0.15 5.68 16 19 O -0.23 -13.97 9.76 -22.74 -0.22 -14.19 16 20 C -0.41 -24.04 9.49 67.92 0.64 -23.40 16 21 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 23 N -0.92 -56.32 13.67 21.61 0.30 -56.02 16 24 Si 1.02 42.82 29.55 68.60 2.03 44.84 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 27 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 28 C -0.18 -7.68 9.65 22.39 0.22 -7.46 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.17 7.11 -2.39 -0.02 1.15 16 35 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.25 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.11 2.13 8.13 -2.39 -0.02 2.11 16 38 H 0.11 1.76 7.12 -2.39 -0.02 1.74 16 39 H 0.14 2.36 8.08 -2.39 -0.02 2.34 16 40 H 0.15 2.13 8.08 -2.38 -0.02 2.11 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 43 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -80.88 393.93 6.83 -74.06 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 1.02 Total: 24.55 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 8.04 Total: -18.68 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -3.86 Total: -86.10 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.40 Total: -38.66 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -80.88 6.83 -74.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791042019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.524 kcal (2) G-P(sol) polarization free energy of solvation -80.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds