Wall clock time and date at job start Wed Apr 1 2020 03:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53010 * 109.47031 * 2 1 4 4 C 1.53004 * 109.46881 * 119.99739 * 2 1 3 5 5 N 1.46499 * 109.46709 * 174.74787 * 4 2 1 6 6 C 1.46500 * 120.00103 * 275.57194 * 5 4 2 7 7 C 1.50709 * 109.47160 * 278.90342 * 6 5 4 8 8 H 1.08004 * 119.99615 * 359.97438 * 7 6 5 9 9 C 1.37869 * 119.99908 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00126 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99905 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47385 * 60.00222 * 11 9 7 13 13 H 1.48507 * 109.47479 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47276 * 300.00026 * 11 9 7 15 15 C 1.34783 * 119.99938 * 95.57433 * 5 4 2 16 16 O 1.21568 * 119.99975 * 6.15377 * 15 5 4 17 17 C 1.47653 * 119.99753 * 186.14544 * 15 5 4 18 18 C 1.39881 * 120.04301 * 329.79821 * 17 15 5 19 19 C 1.37515 * 120.09537 * 179.74329 * 18 17 15 20 20 C 1.39336 * 120.25379 * 0.25181 * 19 18 17 21 21 N 1.38871 * 119.50924 * 180.02562 * 20 19 18 22 22 H 0.96999 * 119.90266 * 0.02562 * 21 20 19 23 23 C 1.34810 * 120.19355 * 180.02562 * 21 20 19 24 24 O 1.21448 * 120.32025 * 180.02562 * 23 21 20 25 25 C 1.49183 * 119.35735 * 359.97438 * 23 21 20 26 26 O 1.21453 * 120.36457 * 180.02562 * 25 23 21 27 27 N 1.34851 * 119.27606 * 0.02562 * 25 23 21 28 28 H 0.96999 * 119.97191 * 180.02562 * 27 25 23 29 29 C 1.39306 * 120.05720 * 359.97438 * 27 25 23 30 30 C 1.38693 * 119.56869 * 180.02562 * 29 27 25 31 31 H 1.08996 * 109.47210 * 300.00473 * 1 2 3 32 32 H 1.08999 * 109.46632 * 60.00001 * 1 2 3 33 33 H 1.08997 * 109.46789 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47475 * 240.00262 * 2 1 3 35 35 H 1.08995 * 109.47153 * 185.94938 * 3 2 1 36 36 H 1.08999 * 109.46955 * 305.95250 * 3 2 1 37 37 H 1.09007 * 109.46872 * 65.95533 * 3 2 1 38 38 H 1.08993 * 109.46932 * 54.75017 * 4 2 1 39 39 H 1.09001 * 109.47323 * 294.74412 * 4 2 1 40 40 H 1.08998 * 109.46713 * 38.90196 * 6 5 4 41 41 H 1.09000 * 109.47199 * 158.90183 * 6 5 4 42 42 H 0.96995 * 119.99871 * 180.02562 * 10 9 7 43 43 H 1.07999 * 119.94812 * 0.02562 * 18 17 15 44 44 H 1.08010 * 119.87116 * 180.27318 * 19 18 17 45 45 H 1.07998 * 120.03893 * 359.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4995 -0.8317 1.1877 6 6 4.1202 -1.9368 0.4531 7 6 4.1239 -3.1734 1.3147 8 1 3.7062 -3.1392 2.3101 9 6 4.6606 -4.3481 0.8322 10 7 5.1698 -4.3895 -0.3797 11 14 4.6647 -5.8809 1.8999 12 1 3.2681 -6.2426 2.2520 13 1 5.2939 -7.0012 1.1553 14 1 5.4358 -5.6174 3.1414 15 6 4.2713 0.0835 1.8070 16 8 3.7605 0.9349 2.5085 17 6 5.7373 0.0518 1.6335 18 6 6.3897 -1.1648 1.4078 19 6 7.7543 -1.1949 1.2407 20 6 8.4950 -0.0163 1.3004 21 7 9.8723 -0.0645 1.1291 22 1 10.3102 -0.9151 0.9689 23 6 10.6025 1.0674 1.1846 24 8 11.8070 1.0279 1.0346 25 6 9.9164 2.3690 1.4311 26 8 10.5563 3.3999 1.4842 27 7 8.5779 2.3884 1.5941 28 1 8.1215 3.2291 1.7545 29 6 7.8501 1.2023 1.5314 30 6 6.4738 1.2341 1.7000 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1248 1.4445 -0.1065 36 1 1.5923 1.9862 -0.8319 37 1 1.7664 1.9247 0.9386 38 1 1.6019 -1.7181 1.2976 39 1 1.7556 -0.1559 2.1368 40 1 3.5542 -2.1306 -0.4580 41 1 5.1452 -1.6710 0.1946 42 1 5.5471 -5.2160 -0.7192 43 1 5.8202 -2.0812 1.3601 44 1 8.2538 -2.1358 1.0622 45 1 5.9727 2.1738 1.8791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792522072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:24 Heat of formation + Delta-G solvation = -57.688247 kcal Electronic energy + Delta-G solvation = -30670.295679 eV Core-core repulsion = 26460.425733 eV Total energy + Delta-G solvation = -4209.869946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83426 -40.03064 -38.68359 -38.60538 -36.17638 -35.81829 -34.99050 -34.23878 -32.55933 -30.23161 -29.65158 -27.72782 -26.88972 -26.09673 -25.76252 -23.90962 -23.00742 -22.88232 -20.48350 -19.48258 -19.26499 -18.44345 -18.12192 -17.77096 -16.78479 -16.49440 -16.29345 -15.88033 -15.59610 -14.99915 -14.81752 -14.48092 -14.35630 -14.26186 -14.05079 -13.85624 -13.84562 -13.52063 -13.03764 -12.81929 -12.56007 -12.36464 -12.00287 -11.83023 -11.76065 -11.49121 -11.30328 -11.18680 -11.08958 -10.95435 -10.82066 -10.66071 -10.47709 -10.24915 -10.19879 -10.04854 -9.83787 -9.27506 -8.82430 -8.54309 -7.88429 -7.76564 -6.44460 -4.55231 0.68919 1.01321 1.53622 2.24564 2.72815 2.75575 3.09631 3.16285 3.18756 3.32331 3.61236 3.79092 4.00177 4.14878 4.49296 4.84628 4.90385 5.14185 5.20701 5.23677 5.32575 5.38682 5.44389 5.55366 5.74620 5.83257 5.92508 5.95929 6.04298 6.08099 6.19274 6.23972 6.27884 6.32683 6.42753 6.50212 6.51803 6.57512 6.61312 6.69358 6.84618 6.99569 7.05820 7.16215 7.33394 7.51068 7.66168 7.75472 8.14855 8.54164 8.79319 9.14154 10.59275 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.004003 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.618196 B = 6993.164247 C = 9418.231740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.583 5.583 6 C 0.207 3.793 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.558 3.442 16 O -0.564 6.564 17 C -0.117 4.117 18 C -0.076 4.076 19 C -0.132 4.132 20 C 0.132 3.868 21 N -0.628 5.628 22 H 0.423 0.577 23 C 0.508 3.492 24 O -0.480 6.480 25 C 0.508 3.492 26 O -0.484 6.484 27 N -0.627 5.627 28 H 0.421 0.579 29 C 0.086 3.914 30 C -0.066 4.066 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.270 0.730 43 H 0.213 0.787 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.030 5.655 0.281 5.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.195 4.195 4 C 0.000 4.000 5 N -0.312 5.312 6 C 0.087 3.913 7 C -0.586 4.586 8 H 0.085 0.915 9 C -0.134 4.134 10 N -0.516 5.516 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.347 3.653 16 O -0.446 6.446 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.153 4.153 20 C 0.033 3.967 21 N -0.276 5.276 22 H 0.263 0.737 23 C 0.290 3.710 24 O -0.350 6.350 25 C 0.290 3.710 26 O -0.354 6.354 27 N -0.276 5.276 28 H 0.261 0.739 29 C -0.012 4.012 30 C -0.088 4.088 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.229 0.771 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.014 6.601 0.412 6.614 hybrid contribution -0.019 -1.100 0.346 1.153 sum -0.005 5.501 0.759 5.553 Atomic orbital electron populations 1.21746 0.95144 1.01664 1.01393 1.21496 0.95399 0.96762 0.99552 1.21757 1.00837 0.95737 1.01141 1.21423 0.80250 1.00875 0.97480 1.48016 1.05911 1.26329 1.50904 1.20316 0.95649 0.83058 0.92243 1.21434 1.40971 0.94388 1.01827 0.91519 1.24985 0.94518 0.98882 0.95057 1.69915 1.37680 1.28367 1.15600 0.86567 0.78863 0.81869 0.80435 1.19900 1.20967 1.19744 1.18009 0.86032 0.81365 0.79894 1.90693 1.74941 1.38885 1.40066 1.19822 0.94199 0.93435 1.04647 1.23406 0.94079 1.01876 0.90012 1.20793 0.94405 0.95486 1.04593 1.17654 0.82140 0.93799 1.03144 1.43653 1.06123 1.11123 1.66709 0.73743 1.20169 0.87589 0.84610 0.78668 1.90884 1.12663 1.85271 1.46231 1.20088 0.82036 0.90138 0.78782 1.90884 1.64296 1.32552 1.47696 1.43621 1.06868 1.09907 1.67199 0.73936 1.17058 0.91564 0.83798 1.08795 1.20602 0.89667 0.99335 0.99180 0.92810 0.92941 0.92571 0.90927 0.93164 0.93679 0.92432 0.90264 0.90473 0.94641 0.91614 0.91970 0.77098 0.83996 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 2 C -0.11 -1.59 3.12 -90.61 -0.28 -1.88 16 3 C -0.14 -1.93 8.22 37.16 0.31 -1.62 16 4 C 0.12 2.01 4.97 -4.04 -0.02 1.99 16 5 N -0.58 -10.62 2.28 -176.24 -0.40 -11.02 16 6 C 0.21 4.14 4.67 -5.19 -0.02 4.12 16 7 C -0.55 -12.04 7.48 -34.44 -0.26 -12.29 16 8 H 0.07 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.07 1.60 5.34 -17.82 -0.10 1.50 16 10 N -0.88 -20.58 13.29 55.43 0.74 -19.84 16 11 Si 0.90 17.98 29.54 -169.99 -5.02 12.96 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 15 C 0.56 10.17 6.11 -12.41 -0.08 10.09 16 16 O -0.56 -11.09 15.66 5.31 0.08 -11.01 16 17 C -0.12 -1.89 5.57 -104.99 -0.59 -2.47 16 18 C -0.08 -1.23 7.45 -39.23 -0.29 -1.52 16 19 C -0.13 -1.78 9.83 -39.44 -0.39 -2.17 16 20 C 0.13 1.66 6.62 -83.68 -0.55 1.11 16 21 N -0.63 -7.27 5.37 -10.23 -0.05 -7.33 16 22 H 0.42 3.93 8.78 -40.82 -0.36 3.57 16 23 C 0.51 7.13 8.00 -11.70 -0.09 7.03 16 24 O -0.48 -8.05 17.80 -10.84 -0.19 -8.25 16 25 C 0.51 7.11 8.00 -11.68 -0.09 7.02 16 26 O -0.48 -8.09 17.81 -10.85 -0.19 -8.28 16 27 N -0.63 -7.21 5.39 -10.27 -0.06 -7.27 16 28 H 0.42 3.86 8.79 -40.82 -0.36 3.50 16 29 C 0.09 1.08 6.61 -83.71 -0.55 0.52 16 30 C -0.07 -0.90 9.40 -38.96 -0.37 -1.26 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.10 7.98 -51.93 -0.41 0.68 16 35 H 0.05 0.77 7.05 -51.93 -0.37 0.41 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 39 H 0.08 1.29 7.20 -51.93 -0.37 0.91 16 40 H 0.04 0.77 7.97 -51.93 -0.41 0.36 16 41 H 0.07 1.32 4.03 -52.02 -0.21 1.11 16 42 H 0.27 6.11 8.31 -40.82 -0.34 5.78 16 43 H 0.21 4.01 3.09 -52.49 -0.16 3.85 16 44 H 0.14 1.67 8.06 -52.48 -0.42 1.24 16 45 H 0.14 1.72 7.91 -52.49 -0.42 1.31 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -27.24 374.86 -8.06 -35.30 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.58 Total: 10.22 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -3.03 Total: 8.87 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.22 Total: -45.46 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.30 Total: -27.54 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.96 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.24 -8.06 -35.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792522072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.388 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds