Wall clock time and date at job start Wed Apr 1 2020 03:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53010 * 109.47031 * 2 1 4 4 C 1.53004 * 109.46881 * 119.99739 * 2 1 3 5 5 N 1.46499 * 109.46709 * 174.74787 * 4 2 1 6 6 C 1.46500 * 120.00103 * 275.57194 * 5 4 2 7 7 C 1.50709 * 109.47160 * 278.90342 * 6 5 4 8 8 H 1.08004 * 119.99615 * 359.97438 * 7 6 5 9 9 C 1.37869 * 119.99908 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00126 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99905 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47385 * 60.00222 * 11 9 7 13 13 H 1.48507 * 109.47479 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47276 * 300.00026 * 11 9 7 15 15 C 1.34783 * 119.99938 * 95.57433 * 5 4 2 16 16 O 1.21568 * 119.99975 * 6.15377 * 15 5 4 17 17 C 1.47653 * 119.99753 * 186.14544 * 15 5 4 18 18 C 1.39881 * 120.04301 * 329.79821 * 17 15 5 19 19 C 1.37515 * 120.09537 * 179.74329 * 18 17 15 20 20 C 1.39336 * 120.25379 * 0.25181 * 19 18 17 21 21 N 1.38871 * 119.50924 * 180.02562 * 20 19 18 22 22 H 0.96999 * 119.90266 * 0.02562 * 21 20 19 23 23 C 1.34810 * 120.19355 * 180.02562 * 21 20 19 24 24 O 1.21448 * 120.32025 * 180.02562 * 23 21 20 25 25 C 1.49183 * 119.35735 * 359.97438 * 23 21 20 26 26 O 1.21453 * 120.36457 * 180.02562 * 25 23 21 27 27 N 1.34851 * 119.27606 * 0.02562 * 25 23 21 28 28 H 0.96999 * 119.97191 * 180.02562 * 27 25 23 29 29 C 1.39306 * 120.05720 * 359.97438 * 27 25 23 30 30 C 1.38693 * 119.56869 * 180.02562 * 29 27 25 31 31 H 1.08996 * 109.47210 * 300.00473 * 1 2 3 32 32 H 1.08999 * 109.46632 * 60.00001 * 1 2 3 33 33 H 1.08997 * 109.46789 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47475 * 240.00262 * 2 1 3 35 35 H 1.08995 * 109.47153 * 185.94938 * 3 2 1 36 36 H 1.08999 * 109.46955 * 305.95250 * 3 2 1 37 37 H 1.09007 * 109.46872 * 65.95533 * 3 2 1 38 38 H 1.08993 * 109.46932 * 54.75017 * 4 2 1 39 39 H 1.09001 * 109.47323 * 294.74412 * 4 2 1 40 40 H 1.08998 * 109.46713 * 38.90196 * 6 5 4 41 41 H 1.09000 * 109.47199 * 158.90183 * 6 5 4 42 42 H 0.96995 * 119.99871 * 180.02562 * 10 9 7 43 43 H 1.07999 * 119.94812 * 0.02562 * 18 17 15 44 44 H 1.08010 * 119.87116 * 180.27318 * 19 18 17 45 45 H 1.07998 * 120.03893 * 359.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4995 -0.8317 1.1877 6 6 4.1202 -1.9368 0.4531 7 6 4.1239 -3.1734 1.3147 8 1 3.7062 -3.1392 2.3101 9 6 4.6606 -4.3481 0.8322 10 7 5.1698 -4.3895 -0.3797 11 14 4.6647 -5.8809 1.8999 12 1 3.2681 -6.2426 2.2520 13 1 5.2939 -7.0012 1.1553 14 1 5.4358 -5.6174 3.1414 15 6 4.2713 0.0835 1.8070 16 8 3.7605 0.9349 2.5085 17 6 5.7373 0.0518 1.6335 18 6 6.3897 -1.1648 1.4078 19 6 7.7543 -1.1949 1.2407 20 6 8.4950 -0.0163 1.3004 21 7 9.8723 -0.0645 1.1291 22 1 10.3102 -0.9151 0.9689 23 6 10.6025 1.0674 1.1846 24 8 11.8070 1.0279 1.0346 25 6 9.9164 2.3690 1.4311 26 8 10.5563 3.3999 1.4842 27 7 8.5779 2.3884 1.5941 28 1 8.1215 3.2291 1.7545 29 6 7.8501 1.2023 1.5314 30 6 6.4738 1.2341 1.7000 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1248 1.4445 -0.1065 36 1 1.5923 1.9862 -0.8319 37 1 1.7664 1.9247 0.9386 38 1 1.6019 -1.7181 1.2976 39 1 1.7556 -0.1559 2.1368 40 1 3.5542 -2.1306 -0.4580 41 1 5.1452 -1.6710 0.1946 42 1 5.5471 -5.2160 -0.7192 43 1 5.8202 -2.0812 1.3601 44 1 8.2538 -2.1358 1.0622 45 1 5.9727 2.1738 1.8791 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792522072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:23 Heat of formation + Delta-G solvation = -73.351687 kcal Electronic energy + Delta-G solvation = -30670.974897 eV Core-core repulsion = 26460.425733 eV Total energy + Delta-G solvation = -4210.549164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.96754 -41.36601 -39.92239 -39.76547 -37.48499 -37.10714 -36.11362 -35.61337 -34.15210 -31.39611 -30.85772 -29.31080 -27.98334 -27.33601 -26.88914 -25.30449 -24.44989 -24.04571 -21.69147 -20.69678 -20.41570 -19.70572 -19.25651 -18.89945 -18.47502 -17.63524 -17.55488 -17.31401 -16.81982 -16.38621 -16.30511 -15.76085 -15.58709 -15.41446 -15.27113 -15.09740 -14.92963 -14.69899 -14.33201 -14.23939 -14.09852 -13.63243 -13.13507 -13.09809 -12.97247 -12.77626 -12.68739 -12.56221 -12.41819 -12.22146 -12.11490 -12.02434 -11.78818 -11.62497 -11.48644 -11.39276 -11.27606 -10.76978 -10.48004 -9.69828 -9.34802 -8.94352 -8.16958 -6.32015 -0.47652 -0.16238 0.41862 1.16098 1.48299 1.51898 1.54275 1.58206 1.66617 2.04384 2.29364 2.46534 2.62571 2.79313 3.11993 3.38690 3.63994 3.95112 4.04263 4.10745 4.18026 4.24134 4.35251 4.46049 4.60837 4.73450 4.74954 4.84662 4.93688 4.96400 4.98454 5.05739 5.07778 5.13902 5.26134 5.32489 5.36286 5.43388 5.44939 5.45597 5.51333 5.63590 5.72538 5.85920 5.89337 6.06696 6.14560 6.59674 6.61939 6.85265 7.30612 7.42867 8.85780 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.004003 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.618196 B = 6993.164247 C = 9418.231740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.587 5.587 6 C 0.221 3.779 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.041 3.959 10 N -0.902 5.902 11 Si 0.943 3.057 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.555 3.445 16 O -0.583 6.583 17 C -0.133 4.133 18 C -0.091 4.091 19 C -0.121 4.121 20 C 0.141 3.859 21 N -0.608 5.608 22 H 0.436 0.564 23 C 0.511 3.489 24 O -0.509 6.509 25 C 0.511 3.489 26 O -0.512 6.512 27 N -0.607 5.607 28 H 0.435 0.565 29 C 0.095 3.905 30 C -0.054 4.054 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.071 0.929 42 H 0.271 0.729 43 H 0.188 0.812 44 H 0.161 0.839 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 6.036 0.349 6.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.187 4.187 4 C -0.003 4.003 5 N -0.315 5.315 6 C 0.101 3.899 7 C -0.587 4.587 8 H 0.073 0.927 9 C -0.162 4.162 10 N -0.539 5.539 11 Si 0.769 3.231 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.345 3.655 16 O -0.466 6.466 17 C -0.138 4.138 18 C -0.109 4.109 19 C -0.141 4.141 20 C 0.041 3.959 21 N -0.257 5.257 22 H 0.279 0.721 23 C 0.293 3.707 24 O -0.382 6.382 25 C 0.293 3.707 26 O -0.385 6.385 27 N -0.256 5.256 28 H 0.277 0.723 29 C -0.003 4.003 30 C -0.075 4.075 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.204 0.796 44 H 0.179 0.821 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.065 6.968 0.485 6.985 hybrid contribution -0.074 -1.201 0.349 1.253 sum -0.008 5.767 0.834 5.827 Atomic orbital electron populations 1.21708 0.92913 1.02226 1.02533 1.21444 0.97221 0.96426 0.97651 1.21681 0.99754 0.95655 1.01625 1.21527 0.79482 1.00716 0.98557 1.48033 1.06682 1.26018 1.50739 1.20059 0.95641 0.83082 0.91166 1.21501 1.40519 0.95307 1.01387 0.92743 1.25437 0.94374 1.00633 0.95759 1.69976 1.38578 1.28804 1.16550 0.85831 0.78351 0.79549 0.79340 1.20468 1.20879 1.19410 1.18321 0.86958 0.80872 0.79338 1.90670 1.75567 1.39510 1.40824 1.19732 0.93179 0.94454 1.06417 1.23053 0.95117 1.00869 0.91885 1.20836 0.93357 0.96579 1.03343 1.17599 0.82364 0.93563 1.02365 1.43497 1.05534 1.11319 1.65338 0.72148 1.20145 0.87216 0.84986 0.78339 1.90880 1.13848 1.85619 1.47817 1.20050 0.82416 0.89730 0.78512 1.90880 1.64902 1.33467 1.49276 1.43459 1.06104 1.10268 1.65804 0.72301 1.17010 0.91264 0.84086 1.07970 1.20633 0.89795 0.99071 0.98050 0.92130 0.91308 0.92355 0.92108 0.94921 0.91603 0.93059 0.91027 0.90905 0.96782 0.91154 0.91976 0.79618 0.82117 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 2 C -0.11 -3.02 3.12 -10.79 -0.03 -3.05 16 3 C -0.13 -3.53 8.22 71.99 0.59 -2.94 16 4 C 0.12 3.98 4.97 86.38 0.43 4.41 16 5 N -0.59 -21.71 2.28 -829.78 -1.89 -23.60 16 6 C 0.22 9.03 4.67 85.64 0.40 9.43 16 7 C -0.55 -24.43 7.48 25.60 0.19 -24.24 16 8 H 0.05 2.52 7.81 -2.91 -0.02 2.49 16 9 C 0.04 1.85 5.34 84.65 0.45 2.30 16 10 N -0.90 -42.24 13.29 21.45 0.28 -41.96 16 11 Si 0.94 36.64 29.54 68.60 2.03 38.67 16 12 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 15 C 0.56 20.23 6.11 86.73 0.53 20.76 16 16 O -0.58 -22.78 15.66 -3.93 -0.06 -22.84 16 17 C -0.13 -4.21 5.57 -20.10 -0.11 -4.33 16 18 C -0.09 -2.87 7.45 22.50 0.17 -2.70 16 19 C -0.12 -3.02 9.83 22.36 0.22 -2.80 16 20 C 0.14 3.21 6.62 38.67 0.26 3.46 16 21 N -0.61 -12.58 5.37 -304.58 -1.64 -14.21 16 22 H 0.44 6.94 8.78 -92.71 -0.81 6.13 16 23 C 0.51 13.38 8.00 87.18 0.70 14.08 16 24 O -0.51 -16.45 17.80 11.99 0.21 -16.23 16 25 C 0.51 13.35 8.00 87.18 0.70 14.05 16 26 O -0.51 -16.50 17.81 11.97 0.21 -16.28 16 27 N -0.61 -12.46 5.39 -304.68 -1.64 -14.11 16 28 H 0.43 6.82 8.79 -92.71 -0.81 6.00 16 29 C 0.09 2.16 6.61 38.44 0.25 2.41 16 30 C -0.05 -1.36 9.40 22.67 0.21 -1.15 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.85 7.98 -2.39 -0.02 1.83 16 35 H 0.03 0.98 7.05 -2.39 -0.02 0.96 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 39 H 0.07 2.46 7.20 -2.39 -0.02 2.45 16 40 H 0.01 0.63 7.97 -2.39 -0.02 0.61 16 41 H 0.07 2.87 4.03 -2.47 -0.01 2.86 16 42 H 0.27 12.20 8.31 -92.71 -0.77 11.43 16 43 H 0.19 7.08 3.09 -2.91 -0.01 7.07 16 44 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 45 H 0.16 3.47 7.91 -2.91 -0.02 3.44 16 Total: -1.00 -58.12 374.86 2.57 -55.56 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.56 Total: 27.65 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 5.62 Total: 27.36 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -4.89 Total: -93.88 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: 0.37 Total: -55.36 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -58.12 2.57 -55.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792522072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.795 kcal (2) G-P(sol) polarization free energy of solvation -58.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds