Wall clock time and date at job start Wed Apr 1 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 C 1.52998 * 109.46961 * 239.99995 * 2 1 3 5 5 N 1.46498 * 109.47132 * 120.00309 * 2 1 3 6 6 N 1.40448 * 126.82325 * 234.10027 * 5 2 1 7 7 C 1.30708 * 106.78938 * 180.25363 * 6 5 2 8 8 N 1.33242 * 108.95266 * 359.75403 * 7 6 5 9 9 C 1.30835 * 109.82563 * 359.97438 * 8 7 6 10 10 C 1.50700 * 125.95941 * 180.02562 * 9 8 7 11 11 O 1.45200 * 109.47077 * 84.15916 * 10 9 8 12 12 C 1.34760 * 116.99996 * 179.97438 * 11 10 9 13 13 O 1.21517 * 119.99702 * 0.02562 * 12 11 10 14 14 C 1.47395 * 120.00128 * 179.97438 * 12 11 10 15 15 C 1.39734 * 120.20183 * 0.02562 * 14 12 11 16 16 C 1.37797 * 119.90925 * 180.02562 * 15 14 12 17 17 C 1.38583 * 120.33626 * 359.97438 * 16 15 14 18 18 C 1.38020 * 120.41597 * 359.97438 * 17 16 15 19 19 C 1.38832 * 120.07679 * 0.02562 * 18 17 16 20 20 O 1.35501 * 120.17127 * 179.97438 * 19 18 17 21 21 C 1.34817 * 116.99616 * 354.15830 * 20 19 18 22 22 H 1.08000 * 119.99832 * 5.07936 * 21 20 19 23 23 C 1.38708 * 119.99956 * 185.07502 * 21 20 19 24 24 N 1.31518 * 119.99728 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46922 * 90.00642 * 25 23 21 27 27 H 1.48500 * 109.46954 * 209.99953 * 25 23 21 28 28 H 1.48494 * 109.47565 * 330.00607 * 25 23 21 29 29 H 1.08997 * 109.47401 * 300.00010 * 1 2 3 30 30 H 1.09001 * 109.47078 * 60.00328 * 1 2 3 31 31 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46891 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47380 * 299.99784 * 3 2 1 34 34 H 1.08997 * 109.46648 * 60.00160 * 3 2 1 35 35 H 1.08994 * 109.47635 * 306.82106 * 4 2 1 36 36 H 1.09004 * 109.47260 * 66.82273 * 4 2 1 37 37 H 1.09004 * 109.47512 * 186.82197 * 4 2 1 38 38 H 1.08005 * 125.52309 * 179.70672 * 7 6 5 39 39 H 1.08993 * 109.47298 * 324.15987 * 10 9 8 40 40 H 1.09006 * 109.46718 * 204.15845 * 10 9 8 41 41 H 1.07997 * 120.04342 * 359.97438 * 15 14 12 42 42 H 1.08008 * 119.83003 * 180.02562 * 16 15 14 43 43 H 1.08005 * 119.79642 * 179.72607 * 17 16 15 44 44 H 1.08002 * 119.96569 * 179.97438 * 18 17 16 45 45 H 0.97005 * 119.99446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1961 6 7 2.9205 -0.1890 2.1485 7 6 3.0865 -1.1278 3.0426 8 7 2.3401 -2.1800 2.7090 9 6 1.6891 -1.9292 1.6022 10 6 0.7409 -2.8676 0.9012 11 8 -0.5779 -2.7587 1.4990 12 6 -1.5495 -3.5372 0.9833 13 8 -1.3012 -4.2870 0.0598 14 6 -2.9130 -3.4803 1.5403 15 6 -3.2030 -2.6200 2.6026 16 6 -4.4796 -2.5720 3.1190 17 6 -5.4793 -3.3727 2.5898 18 6 -5.2083 -4.2265 1.5398 19 6 -3.9281 -4.2888 1.0063 20 8 -3.6597 -5.1267 -0.0242 21 6 -4.6468 -5.9612 -0.4073 22 1 -5.6242 -5.8857 0.0460 23 6 -4.4072 -6.9167 -1.3838 24 7 -3.2169 -7.0089 -1.9355 25 14 -5.7747 -8.0735 -1.9142 26 1 -6.5256 -7.4675 -3.0431 27 1 -5.1885 -9.3672 -2.3475 28 1 -6.6972 -8.3051 -0.7739 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.5805 -1.7076 -1.3124 36 1 1.7797 -0.1418 -2.1351 37 1 3.1231 -0.8282 -1.1904 38 1 3.7257 -1.0618 3.9107 39 1 1.1019 -3.8910 1.0018 40 1 0.6839 -2.6044 -0.1551 41 1 -2.4274 -1.9943 3.0189 42 1 -4.7025 -1.9063 3.9399 43 1 -6.4759 -3.3313 3.0042 44 1 -5.9928 -4.8476 1.1332 45 1 -3.0492 -7.6774 -2.6182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801241284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:17 Heat of formation + Delta-G solvation = 13.165944 kcal Electronic energy + Delta-G solvation = -30467.806051 eV Core-core repulsion = 26261.008573 eV Total energy + Delta-G solvation = -4206.797478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33950 -39.96740 -38.77537 -37.43348 -36.49269 -35.77530 -32.47127 -32.20193 -31.32381 -30.69126 -29.04355 -27.93870 -27.71183 -27.30756 -25.51889 -23.59046 -22.97656 -21.70647 -21.20854 -20.34981 -19.73721 -18.13806 -17.68867 -16.98100 -16.66101 -16.17993 -15.95894 -15.66579 -15.06585 -14.73119 -14.47976 -14.35983 -14.18846 -14.12738 -13.85834 -13.71955 -13.33429 -12.98251 -12.77539 -12.68713 -12.62700 -12.48046 -12.30503 -12.08212 -11.94193 -11.80936 -11.59804 -11.43471 -11.20045 -11.09506 -10.97705 -10.85338 -10.53230 -10.31649 -10.02965 -9.94437 -9.82261 -9.69146 -9.33174 -8.98572 -8.39821 -7.44910 -6.57146 -4.16711 1.34092 1.51412 2.04561 2.24735 2.69148 3.05397 3.06979 3.11672 3.31695 3.33707 3.84123 4.02478 4.11102 4.41741 4.47241 4.52246 4.61820 4.69226 4.94727 5.07149 5.14208 5.20686 5.25302 5.36234 5.38861 5.42088 5.45850 5.50752 5.51789 5.53782 5.70183 5.78591 5.87623 5.95428 5.98737 6.06404 6.22611 6.36559 6.49041 6.57108 6.66172 6.78436 6.86460 7.02212 7.15891 7.22407 7.59012 7.81290 8.01694 8.54191 8.83116 9.50848 10.56375 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.003008 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.520799 B = 9306.161284 C =10210.040427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.173 3.827 3 C -0.140 4.140 4 C -0.167 4.167 5 N -0.353 5.353 6 N -0.313 5.313 7 C 0.193 3.807 8 N -0.524 5.524 9 C 0.284 3.716 10 C 0.144 3.856 11 O -0.357 6.357 12 C 0.501 3.499 13 O -0.472 6.472 14 C -0.216 4.216 15 C -0.014 4.014 16 C -0.234 4.234 17 C -0.042 4.042 18 C -0.238 4.238 19 C 0.192 3.808 20 O -0.124 6.124 21 C -0.403 4.403 22 H 0.097 0.903 23 C 0.046 3.954 24 N -0.831 5.831 25 Si 0.943 3.057 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.265 1.265 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.218 0.782 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 13.286 3.866 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.089 3.911 3 C -0.197 4.197 4 C -0.225 4.225 5 N -0.146 5.146 6 N -0.141 5.141 7 C -0.109 4.109 8 N -0.252 5.252 9 C 0.007 3.993 10 C 0.067 3.933 11 O -0.275 6.275 12 C 0.347 3.653 13 O -0.358 6.358 14 C -0.219 4.219 15 C -0.032 4.032 16 C -0.253 4.253 17 C -0.060 4.060 18 C -0.257 4.257 19 C 0.132 3.868 20 O -0.022 6.022 21 C -0.478 4.478 22 H 0.114 0.886 23 C -0.163 4.163 24 N -0.462 5.462 25 Si 0.767 3.233 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.189 1.189 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.152 0.848 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.275 13.262 3.328 15.488 hybrid contribution -0.694 -0.648 -0.296 0.994 sum 6.581 12.615 3.033 14.548 Atomic orbital electron populations 1.22430 0.91575 1.04717 1.03907 1.20973 0.95111 0.93863 0.81114 1.21896 1.02383 0.92361 1.03076 1.22399 1.02304 1.01633 0.96162 1.50716 1.32899 1.11280 1.19705 1.77980 1.11659 1.22828 1.01671 1.25970 0.98719 0.86896 0.99358 1.70490 1.12730 1.29338 1.12691 1.23617 0.96893 0.86160 0.92606 1.21044 0.79281 0.97855 0.95110 1.86590 1.17805 1.62806 1.60302 1.21147 0.84809 0.77845 0.81532 1.91025 1.81695 1.36249 1.26806 1.17921 0.88894 1.09502 1.05592 1.20955 0.96383 0.93884 0.92010 1.20540 0.93667 1.06006 1.05044 1.20979 0.98187 0.93078 0.93792 1.21114 0.96925 1.05626 1.02030 1.19193 0.91488 0.89376 0.86696 1.84129 1.39400 1.40580 1.38094 1.21542 0.91625 1.12374 1.22289 0.88593 1.25415 0.97904 0.97187 0.95755 1.70110 1.20456 1.32236 1.23351 0.85693 0.79357 0.78958 0.79340 1.19651 1.20030 1.18940 0.91177 0.89702 0.90626 0.91243 0.90637 0.91376 0.91098 0.89516 0.91405 0.76565 0.87695 0.88863 0.85908 0.86966 0.86896 0.84755 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.37 37.16 0.31 -1.52 16 2 C 0.17 1.82 1.06 -131.82 -0.14 1.69 16 3 C -0.14 -1.22 8.05 37.16 0.30 -0.92 16 4 C -0.17 -1.56 8.50 37.16 0.32 -1.24 16 5 N -0.35 -4.66 3.47 -45.70 -0.16 -4.82 16 6 N -0.31 -4.18 11.82 29.29 0.35 -3.84 16 7 C 0.19 2.47 13.03 -91.82 -1.20 1.27 16 8 N -0.52 -8.10 11.19 -11.97 -0.13 -8.23 16 9 C 0.28 4.25 7.17 -155.69 -1.12 3.13 16 10 C 0.14 2.26 4.75 36.01 0.17 2.43 16 11 O -0.36 -6.44 8.44 -40.66 -0.34 -6.78 16 12 C 0.50 10.83 7.89 34.46 0.27 11.11 16 13 O -0.47 -11.97 14.96 -26.60 -0.40 -12.37 16 14 C -0.22 -4.65 5.89 -104.82 -0.62 -5.27 16 15 C -0.01 -0.25 9.61 -39.18 -0.38 -0.63 16 16 C -0.23 -3.82 10.02 -39.62 -0.40 -4.21 16 17 C -0.04 -0.71 10.03 -39.53 -0.40 -1.11 16 18 C -0.24 -4.88 9.16 -39.44 -0.36 -5.24 16 19 C 0.19 4.58 6.66 -38.58 -0.26 4.32 16 20 O -0.12 -3.49 7.84 -21.01 -0.16 -3.65 16 21 C -0.40 -10.88 9.49 30.91 0.29 -10.59 16 22 H 0.10 2.34 5.21 -52.49 -0.27 2.07 16 23 C 0.05 1.22 5.49 -17.51 -0.10 1.12 16 24 N -0.83 -23.91 13.67 55.48 0.76 -23.15 16 25 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 26 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 27 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 28 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.00 4.53 -51.93 -0.24 0.76 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.73 5.73 -51.93 -0.30 0.43 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.22 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 40 H 0.09 1.35 4.37 -51.93 -0.23 1.12 16 41 H 0.12 1.95 7.61 -52.49 -0.40 1.55 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 45 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 378.12 15.07 5.70 5.70 Total: -1.00 -33.55 378.12 -8.22 -41.77 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.51 Total: 6.39 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -3.29 Total: -5.65 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.81 Total: -40.04 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.91 Total: -22.80 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.55 -8.22 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801241284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.937 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds