Wall clock time and date at job start Wed Apr 1 2020 03:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 C 1.52998 * 109.46961 * 239.99995 * 2 1 3 5 5 N 1.46498 * 109.47132 * 120.00309 * 2 1 3 6 6 N 1.40448 * 126.82325 * 234.10027 * 5 2 1 7 7 C 1.30708 * 106.78938 * 180.25363 * 6 5 2 8 8 N 1.33242 * 108.95266 * 359.75403 * 7 6 5 9 9 C 1.30835 * 109.82563 * 359.97438 * 8 7 6 10 10 C 1.50700 * 125.95941 * 180.02562 * 9 8 7 11 11 O 1.45200 * 109.47077 * 84.15916 * 10 9 8 12 12 C 1.34760 * 116.99996 * 179.97438 * 11 10 9 13 13 O 1.21517 * 119.99702 * 0.02562 * 12 11 10 14 14 C 1.47395 * 120.00128 * 179.97438 * 12 11 10 15 15 C 1.39734 * 120.20183 * 0.02562 * 14 12 11 16 16 C 1.37797 * 119.90925 * 180.02562 * 15 14 12 17 17 C 1.38583 * 120.33626 * 359.97438 * 16 15 14 18 18 C 1.38020 * 120.41597 * 359.97438 * 17 16 15 19 19 C 1.38832 * 120.07679 * 0.02562 * 18 17 16 20 20 O 1.35501 * 120.17127 * 179.97438 * 19 18 17 21 21 C 1.34817 * 116.99616 * 354.15830 * 20 19 18 22 22 H 1.08000 * 119.99832 * 5.07936 * 21 20 19 23 23 C 1.38708 * 119.99956 * 185.07502 * 21 20 19 24 24 N 1.31518 * 119.99728 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99780 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.46922 * 90.00642 * 25 23 21 27 27 H 1.48500 * 109.46954 * 209.99953 * 25 23 21 28 28 H 1.48494 * 109.47565 * 330.00607 * 25 23 21 29 29 H 1.08997 * 109.47401 * 300.00010 * 1 2 3 30 30 H 1.09001 * 109.47078 * 60.00328 * 1 2 3 31 31 H 1.09003 * 109.47304 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46891 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47380 * 299.99784 * 3 2 1 34 34 H 1.08997 * 109.46648 * 60.00160 * 3 2 1 35 35 H 1.08994 * 109.47635 * 306.82106 * 4 2 1 36 36 H 1.09004 * 109.47260 * 66.82273 * 4 2 1 37 37 H 1.09004 * 109.47512 * 186.82197 * 4 2 1 38 38 H 1.08005 * 125.52309 * 179.70672 * 7 6 5 39 39 H 1.08993 * 109.47298 * 324.15987 * 10 9 8 40 40 H 1.09006 * 109.46718 * 204.15845 * 10 9 8 41 41 H 1.07997 * 120.04342 * 359.97438 * 15 14 12 42 42 H 1.08008 * 119.83003 * 180.02562 * 16 15 14 43 43 H 1.08005 * 119.79642 * 179.72607 * 17 16 15 44 44 H 1.08002 * 119.96569 * 179.97438 * 18 17 16 45 45 H 0.97005 * 119.99446 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1961 6 7 2.9205 -0.1890 2.1485 7 6 3.0865 -1.1278 3.0426 8 7 2.3401 -2.1800 2.7090 9 6 1.6891 -1.9292 1.6022 10 6 0.7409 -2.8676 0.9012 11 8 -0.5779 -2.7587 1.4990 12 6 -1.5495 -3.5372 0.9833 13 8 -1.3012 -4.2870 0.0598 14 6 -2.9130 -3.4803 1.5403 15 6 -3.2030 -2.6200 2.6026 16 6 -4.4796 -2.5720 3.1190 17 6 -5.4793 -3.3727 2.5898 18 6 -5.2083 -4.2265 1.5398 19 6 -3.9281 -4.2888 1.0063 20 8 -3.6597 -5.1267 -0.0242 21 6 -4.6468 -5.9612 -0.4073 22 1 -5.6242 -5.8857 0.0460 23 6 -4.4072 -6.9167 -1.3838 24 7 -3.2169 -7.0089 -1.9355 25 14 -5.7747 -8.0735 -1.9142 26 1 -6.5256 -7.4675 -3.0431 27 1 -5.1885 -9.3672 -2.3475 28 1 -6.6972 -8.3051 -0.7739 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.5805 -1.7076 -1.3124 36 1 1.7797 -0.1418 -2.1351 37 1 3.1231 -0.8282 -1.1904 38 1 3.7257 -1.0618 3.9107 39 1 1.1019 -3.8910 1.0018 40 1 0.6839 -2.6044 -0.1551 41 1 -2.4274 -1.9943 3.0189 42 1 -4.7025 -1.9063 3.9399 43 1 -6.4759 -3.3313 3.0042 44 1 -5.9928 -4.8476 1.1332 45 1 -3.0492 -7.6774 -2.6182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801241284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:16 Heat of formation + Delta-G solvation = -5.408529 kcal Electronic energy + Delta-G solvation = -30468.611500 eV Core-core repulsion = 26261.008573 eV Total energy + Delta-G solvation = -4207.602927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.41545 -41.62766 -40.44452 -38.35553 -38.14415 -37.43215 -34.36128 -33.41829 -32.39533 -32.16029 -30.65566 -28.99444 -28.54472 -28.29331 -27.40257 -25.11275 -24.03296 -23.32692 -22.30578 -21.92206 -20.78402 -19.91637 -19.32996 -18.47551 -17.95094 -17.61242 -17.30429 -16.81487 -16.38506 -16.18534 -16.09846 -15.77883 -15.52465 -15.30385 -15.14875 -15.03352 -14.75647 -14.41666 -14.25358 -13.87698 -13.57144 -13.50937 -13.47475 -13.27375 -13.09919 -13.02715 -12.86909 -12.73533 -12.55770 -12.43526 -12.38007 -12.14049 -12.12275 -11.70649 -11.66201 -11.16864 -11.12531 -10.90359 -10.84469 -10.70409 -9.94607 -9.13010 -8.47510 -6.18091 -0.08028 0.18270 0.67760 1.02756 1.35509 1.45988 1.50486 1.53885 1.67631 2.03804 2.15097 2.80967 2.83647 3.13868 3.22329 3.35812 3.46609 3.59311 3.71140 3.77943 3.84237 4.03612 4.09289 4.21364 4.26207 4.43731 4.48826 4.49836 4.56988 4.58624 4.60771 4.72014 4.74661 4.89008 4.98336 5.04352 5.07651 5.09096 5.10602 5.19868 5.27301 5.40269 5.45270 5.57524 5.64533 5.65536 5.93662 6.09887 6.85472 6.92973 6.94322 7.70773 8.72129 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.003008 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.520799 B = 9306.161284 C =10210.040427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 C -0.132 4.132 4 C -0.165 4.165 5 N -0.347 5.347 6 N -0.318 5.318 7 C 0.193 3.807 8 N -0.550 5.550 9 C 0.270 3.730 10 C 0.145 3.855 11 O -0.345 6.345 12 C 0.506 3.494 13 O -0.519 6.519 14 C -0.234 4.234 15 C -0.013 4.013 16 C -0.204 4.204 17 C -0.025 4.025 18 C -0.254 4.254 19 C 0.162 3.838 20 O -0.184 6.184 21 C -0.427 4.427 22 H 0.112 0.888 23 C -0.017 4.017 24 N -0.900 5.900 25 Si 1.021 2.979 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.248 1.248 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.255 0.745 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.147 0.853 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.133 0.867 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 16.045 6.104 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.223 4.223 5 N -0.140 5.140 6 N -0.146 5.146 7 C -0.109 4.109 8 N -0.280 5.280 9 C -0.006 4.006 10 C 0.069 3.931 11 O -0.262 6.262 12 C 0.353 3.647 13 O -0.408 6.408 14 C -0.237 4.237 15 C -0.031 4.031 16 C -0.223 4.223 17 C -0.043 4.043 18 C -0.273 4.273 19 C 0.106 3.894 20 O -0.086 6.086 21 C -0.503 4.503 22 H 0.129 0.871 23 C -0.217 4.217 24 N -0.535 5.535 25 Si 0.839 3.161 26 H -0.186 1.186 27 H -0.199 1.199 28 H -0.171 1.171 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.271 0.729 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.165 0.835 42 H 0.180 0.820 43 H 0.178 0.822 44 H 0.151 0.849 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.794 16.097 5.629 18.011 hybrid contribution -0.168 -1.132 -0.653 1.317 sum 5.626 14.966 4.976 16.745 Atomic orbital electron populations 1.22414 0.91844 1.03140 1.04904 1.21312 0.94946 0.95058 0.80561 1.21876 1.02138 0.90828 1.04083 1.22413 1.02075 1.01104 0.96691 1.50959 1.32301 1.10642 1.20096 1.77964 1.11710 1.23112 1.01786 1.26720 0.98352 0.85750 1.00078 1.70464 1.13562 1.30770 1.13177 1.23280 0.97317 0.86899 0.93132 1.21102 0.78203 0.97904 0.95913 1.86546 1.18363 1.61510 1.59793 1.21336 0.85591 0.77093 0.80638 1.91013 1.82568 1.38315 1.28935 1.18345 0.88506 1.10121 1.06724 1.21299 0.98197 0.93007 0.90584 1.21178 0.92149 1.04495 1.04453 1.21521 1.00602 0.90659 0.91512 1.21304 0.95562 1.07005 1.03426 1.19891 0.93551 0.89193 0.86721 1.84134 1.40554 1.42939 1.40938 1.22078 0.92308 1.12962 1.22924 0.87103 1.26723 1.00601 0.98813 0.95557 1.70286 1.23446 1.34279 1.25477 0.84573 0.75981 0.76134 0.79406 1.18576 1.19919 1.17087 0.91613 0.87273 0.93361 0.91509 0.87888 0.92081 0.92758 0.86872 0.91413 0.72935 0.88789 0.87945 0.83544 0.82031 0.82164 0.84919 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.37 71.98 0.60 -2.85 16 2 C 0.16 3.27 1.06 3.60 0.00 3.27 16 3 C -0.13 -2.01 8.05 71.98 0.58 -1.43 16 4 C -0.16 -2.95 8.50 71.98 0.61 -2.34 16 5 N -0.35 -8.94 3.47 -298.51 -1.03 -9.97 16 6 N -0.32 -8.04 11.82 -61.24 -0.72 -8.77 16 7 C 0.19 4.66 13.03 180.77 2.36 7.01 16 8 N -0.55 -16.82 11.19 -191.77 -2.15 -18.97 16 9 C 0.27 8.15 7.17 138.22 0.99 9.15 16 10 C 0.15 4.80 4.75 71.24 0.34 5.14 16 11 O -0.35 -12.82 8.44 -56.71 -0.48 -13.30 16 12 C 0.51 22.98 7.89 70.23 0.55 23.54 16 13 O -0.52 -28.49 14.96 26.78 0.40 -28.09 16 14 C -0.23 -10.21 5.89 -20.00 -0.12 -10.33 16 15 C -0.01 -0.42 9.61 22.53 0.22 -0.20 16 16 C -0.20 -5.60 10.02 22.25 0.22 -5.37 16 17 C -0.02 -0.74 10.03 22.30 0.22 -0.51 16 18 C -0.25 -10.19 9.16 22.36 0.20 -9.99 16 19 C 0.16 7.97 6.66 22.92 0.15 8.12 16 20 O -0.18 -11.04 7.84 1.02 0.01 -11.03 16 21 C -0.43 -24.40 9.49 67.93 0.64 -23.76 16 22 H 0.11 5.61 5.21 -2.91 -0.02 5.60 16 23 C -0.02 -0.94 5.49 84.85 0.47 -0.47 16 24 N -0.90 -55.82 13.67 21.62 0.30 -55.53 16 25 Si 1.02 41.88 29.55 68.60 2.03 43.90 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.29 4.53 -2.39 -0.01 1.28 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.15 5.73 -2.39 -0.01 1.14 16 36 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.25 3.70 8.06 -2.91 -0.02 3.67 16 39 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 40 H 0.10 3.19 4.37 -2.38 -0.01 3.18 16 41 H 0.15 4.14 7.61 -2.91 -0.02 4.12 16 42 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.13 5.28 5.64 -2.91 -0.02 5.27 16 45 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -81.22 378.12 7.43 -73.78 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 1.04 Total: 28.99 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 8.05 Total: -1.02 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -3.61 Total: -93.23 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.07 Total: -52.42 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -81.22 7.43 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801241284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.375 kcal (2) G-P(sol) polarization free energy of solvation -81.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds