Wall clock time and date at job start Wed Apr 1 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00535 * 2 1 4 4 C 1.53005 * 109.47158 * 270.00593 * 3 2 1 5 5 C 1.52995 * 109.46812 * 299.99651 * 4 3 2 6 6 C 1.52996 * 109.47277 * 59.99600 * 4 3 2 7 7 C 1.47201 * 109.46844 * 179.97438 * 4 3 2 8 8 N 4.80466 * 118.48754 * 340.02704 * 2 1 3 9 9 C 1.34783 * 119.99769 * 180.02562 * 2 1 3 10 10 O 1.21358 * 119.99862 * 181.30343 * 9 2 1 11 11 C 1.49351 * 119.99846 * 1.30305 * 9 2 1 12 12 O 1.21376 * 120.00273 * 354.55387 * 11 9 2 13 13 N 1.34775 * 119.99822 * 174.55260 * 11 9 2 14 14 C 1.39729 * 119.99832 * 173.28921 * 13 11 9 15 15 C 1.39012 * 120.04108 * 320.15175 * 14 13 11 16 16 C 1.38148 * 120.06318 * 180.02562 * 15 14 13 17 17 C 1.38188 * 120.13782 * 359.72534 * 16 15 14 18 18 C 1.38919 * 120.08192 * 0.55243 * 17 16 15 19 19 O 1.35752 * 120.02712 * 179.72279 * 18 17 16 20 20 C 1.34835 * 117.00079 * 178.79184 * 19 18 17 21 21 H 1.08004 * 119.99370 * 4.62585 * 20 19 18 22 22 C 1.38647 * 120.00073 * 184.62975 * 20 19 18 23 23 N 1.31561 * 119.99554 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00332 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47161 * 89.99779 * 24 22 20 26 26 H 1.48500 * 109.47542 * 209.99791 * 24 22 20 27 27 H 1.48502 * 109.47223 * 330.00385 * 24 22 20 28 28 C 1.38755 * 119.94152 * 359.44606 * 18 17 16 29 29 H 1.09005 * 109.46527 * 263.36810 * 1 2 3 30 30 H 1.09005 * 109.46707 * 23.36144 * 1 2 3 31 31 H 1.08991 * 109.47776 * 143.36657 * 1 2 3 32 32 H 1.08996 * 109.46762 * 30.00132 * 3 2 1 33 33 H 1.09001 * 109.47218 * 150.00272 * 3 2 1 34 34 H 1.08997 * 109.47750 * 60.00371 * 5 4 3 35 35 H 1.09007 * 109.47070 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47588 * 299.99771 * 5 4 3 37 37 H 1.09001 * 109.46954 * 59.99716 * 6 4 3 38 38 H 1.08999 * 109.47448 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47464 * 300.00339 * 6 4 3 40 40 H 0.96998 * 120.00580 * 353.28916 * 13 11 9 41 41 H 1.08001 * 119.97201 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.93068 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.95640 * 180.27809 * 17 16 15 44 44 H 0.97008 * 119.99537 * 180.02562 * 23 22 20 45 45 H 1.07992 * 120.07345 * 180.25374 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2793 0.6441 -2.1638 6 6 1.1156 1.8934 -2.1637 7 6 3.1881 2.9854 -1.4425 8 7 3.7566 3.9689 -1.4424 9 6 2.1388 -1.1673 -0.0005 10 8 3.3522 -1.1674 0.0234 11 6 1.3923 -2.4605 -0.0305 12 8 0.1809 -2.4638 0.0454 13 7 2.0637 -3.6237 -0.1419 14 6 1.3813 -4.8378 -0.0292 15 6 0.3753 -4.9854 0.9187 16 6 -0.2994 -6.1857 1.0308 17 6 0.0194 -7.2412 0.1978 18 6 1.0276 -7.1021 -0.7477 19 8 1.3437 -8.1415 -1.5617 20 6 2.3145 -7.9317 -2.4736 21 1 2.8533 -6.9958 -2.4830 22 6 2.6208 -8.9174 -3.3993 23 7 3.5683 -8.7128 -4.2888 24 14 1.6892 -10.5363 -3.3827 25 1 0.4965 -10.4302 -4.2611 26 1 2.5736 -11.6216 -3.8780 27 1 1.2566 -10.8444 -1.9959 28 6 1.7074 -5.8980 -0.8633 29 1 -0.3632 -0.1187 1.0209 30 1 -0.3633 0.9435 -0.4075 31 1 -0.3634 -0.8246 -0.6131 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1382 0.5138 34 1 2.7343 -0.2999 -2.1639 35 1 3.4605 0.9586 -3.1917 36 1 4.2317 0.5137 -1.6501 37 1 0.5266 2.6530 -1.6498 38 1 1.2972 2.2086 -3.1912 39 1 0.5705 0.9495 -2.1637 40 1 3.0207 -3.6182 -0.3002 41 1 0.1208 -4.1608 1.5682 42 1 -1.0803 -6.2981 1.7683 43 1 -0.5129 -8.1768 0.2850 44 1 3.7824 -9.4023 -4.9367 45 1 2.4888 -5.7862 -1.6003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815800665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:34 Heat of formation + Delta-G solvation = -19.331186 kcal Electronic energy + Delta-G solvation = -29654.489174 eV Core-core repulsion = 25446.282515 eV Total energy + Delta-G solvation = -4208.206659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36992 -39.85158 -38.86464 -38.00513 -36.87939 -36.22490 -34.65601 -33.92609 -32.42084 -29.72580 -29.08119 -28.58203 -27.88260 -26.74387 -25.35567 -24.55906 -22.90759 -21.89397 -21.16448 -19.90082 -18.36218 -17.95995 -17.79863 -17.57512 -17.02632 -16.27941 -15.69327 -15.61112 -15.35626 -15.06298 -14.90535 -14.64570 -14.19309 -13.99070 -13.85044 -13.80092 -13.56224 -13.52639 -13.25696 -13.18841 -13.05570 -12.79876 -12.42168 -12.25321 -12.24162 -12.12269 -12.01470 -11.79748 -11.69173 -11.40746 -11.37162 -11.19040 -11.04743 -10.84850 -10.31988 -9.98537 -9.60816 -9.47655 -9.16725 -8.91965 -7.99055 -7.44116 -6.48282 -4.16091 1.08677 1.89461 2.00541 2.16892 2.37973 2.41159 3.03662 3.17936 3.19736 3.22889 3.36286 3.52926 4.12107 4.18400 4.20044 4.27878 4.38631 4.44450 4.76424 4.83800 4.88667 5.02574 5.08746 5.18449 5.25147 5.35646 5.41563 5.44554 5.47839 5.59432 5.69864 5.74727 5.82776 5.86689 5.91313 6.04487 6.05372 6.34217 6.56408 6.70149 6.76470 7.02987 7.04852 7.13819 7.24265 7.48535 7.53200 7.68892 7.89838 7.96698 8.86520 9.46778 10.59023 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.002422 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.523783 B =11558.951861 C =12783.948768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.584 5.584 3 C 0.125 3.875 4 C 0.017 3.983 5 C -0.139 4.139 6 C -0.147 4.147 7 C 0.219 3.781 8 N -0.428 5.428 9 C 0.510 3.490 10 O -0.509 6.509 11 C 0.505 3.495 12 O -0.496 6.496 13 N -0.637 5.637 14 C 0.173 3.827 15 C -0.193 4.193 16 C -0.064 4.064 17 C -0.194 4.194 18 C 0.173 3.827 19 O -0.212 6.212 20 C -0.392 4.392 21 H 0.106 0.894 22 C 0.065 3.935 23 N -0.877 5.877 24 Si 0.906 3.094 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.259 1.259 28 C -0.235 4.235 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.419 0.581 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.280 0.720 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 17.585 8.054 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.318 5.318 3 C 0.001 3.999 4 C 0.012 3.988 5 C -0.197 4.197 6 C -0.205 4.205 7 C -0.100 4.100 8 N -0.103 5.103 9 C 0.293 3.707 10 O -0.384 6.384 11 C 0.287 3.713 12 O -0.370 6.370 13 N -0.283 5.283 14 C 0.081 3.919 15 C -0.214 4.214 16 C -0.083 4.083 17 C -0.213 4.213 18 C 0.120 3.880 19 O -0.117 6.117 20 C -0.468 4.468 21 H 0.124 0.876 22 C -0.139 4.139 23 N -0.514 5.514 24 Si 0.731 3.269 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.183 1.183 28 C -0.256 4.256 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.257 0.743 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.090 0.910 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.958 18.787 7.930 21.245 hybrid contribution 0.079 -0.855 -0.334 0.922 sum -5.879 17.932 7.596 20.342 Atomic orbital electron populations 1.22557 0.77004 1.04432 1.04074 1.47542 1.08395 1.04427 1.71402 1.21555 0.99411 0.85061 0.93876 1.18718 0.95193 0.86279 0.98561 1.21927 1.00482 0.97019 1.00256 1.22049 0.94024 1.03663 1.00784 1.28841 0.93526 0.94087 0.93526 1.81241 1.09297 1.11829 1.07894 1.20126 0.87544 0.85084 0.77976 1.90799 1.13070 1.87075 1.47426 1.19983 0.87701 0.84996 0.78635 1.90730 1.13056 1.86509 1.46745 1.43142 1.12790 1.03672 1.68742 1.17337 0.95143 0.83889 0.95562 1.20483 1.01000 0.98534 1.01377 1.20508 0.98194 0.91942 0.97641 1.20284 1.01080 1.00397 0.99569 1.18804 0.92297 0.86524 0.90423 1.83609 1.52057 1.33275 1.42729 1.20739 1.11735 1.05205 1.09081 0.87639 1.24468 0.96159 0.99208 0.94063 1.69648 1.29240 1.35386 1.17162 0.86178 0.79493 0.81507 0.79730 1.19836 1.20752 1.18261 1.21006 1.07216 0.93673 1.03692 0.91707 0.90924 0.87431 0.88745 0.88284 0.90906 0.91635 0.90626 0.91465 0.91271 0.89851 0.74291 0.86687 0.86229 0.86189 0.90955 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 8.12 59.84 0.49 0.88 16 2 N -0.58 -4.60 2.40 -182.12 -0.44 -5.04 16 3 C 0.13 0.80 4.53 -4.04 -0.02 0.79 16 4 C 0.02 0.12 0.77 -157.30 -0.12 -0.01 16 5 C -0.14 -1.11 7.11 37.16 0.26 -0.85 16 6 C -0.15 -0.74 7.20 37.16 0.27 -0.47 16 7 C 0.22 1.93 13.86 -20.76 -0.29 1.64 16 8 N -0.43 -4.93 18.54 42.15 0.78 -4.15 16 9 C 0.51 5.53 6.10 -11.63 -0.07 5.45 16 10 O -0.51 -6.29 14.38 5.49 0.08 -6.21 16 11 C 0.51 6.56 7.43 -11.63 -0.09 6.47 16 12 O -0.50 -6.95 11.40 5.47 0.06 -6.88 16 13 N -0.64 -9.11 5.29 -10.31 -0.05 -9.16 16 14 C 0.17 2.98 6.13 -83.77 -0.51 2.47 16 15 C -0.19 -3.17 8.66 -39.33 -0.34 -3.51 16 16 C -0.06 -1.02 10.03 -39.63 -0.40 -1.42 16 17 C -0.19 -3.58 9.99 -39.35 -0.39 -3.97 16 18 C 0.17 3.75 6.65 -39.14 -0.26 3.49 16 19 O -0.21 -5.32 8.58 0.03 0.00 -5.32 16 20 C -0.39 -10.56 9.94 30.88 0.31 -10.25 16 21 H 0.11 2.88 5.43 -52.48 -0.28 2.60 16 22 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 23 N -0.88 -24.55 13.96 55.48 0.77 -23.77 16 24 Si 0.91 20.93 28.62 -169.99 -4.86 16.07 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 28 C -0.23 -4.72 9.09 -39.19 -0.36 -5.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.28 6.35 -51.93 -0.33 -0.05 16 31 H 0.11 0.92 5.55 -51.93 -0.29 0.63 16 32 H 0.09 0.40 8.07 -51.93 -0.42 -0.02 16 33 H 0.10 0.74 7.40 -51.93 -0.38 0.35 16 34 H 0.07 0.65 6.16 -51.93 -0.32 0.33 16 35 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 37 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.42 6.09 -51.93 -0.32 0.10 16 40 H 0.42 5.44 8.34 -40.82 -0.34 5.10 16 41 H 0.12 1.76 6.94 -52.49 -0.36 1.39 16 42 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.14 2.91 5.62 -52.49 -0.29 2.62 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -30.97 376.23 -5.02 -35.98 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.41 Total: 5.51 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.62 Total: -2.71 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 1.06 Total: -42.12 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.14 Total: -18.40 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.86 Total: 16.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.97 -5.02 -35.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815800665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.653 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds