Wall clock time and date at job start Wed Apr 1 2020 03:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00535 * 2 1 4 4 C 1.53005 * 109.47158 * 270.00593 * 3 2 1 5 5 C 1.52995 * 109.46812 * 299.99651 * 4 3 2 6 6 C 1.52996 * 109.47277 * 59.99600 * 4 3 2 7 7 C 1.47201 * 109.46844 * 179.97438 * 4 3 2 8 8 N 4.80466 * 118.48754 * 340.02704 * 2 1 3 9 9 C 1.34783 * 119.99769 * 180.02562 * 2 1 3 10 10 O 1.21358 * 119.99862 * 181.30343 * 9 2 1 11 11 C 1.49351 * 119.99846 * 1.30305 * 9 2 1 12 12 O 1.21376 * 120.00273 * 354.55387 * 11 9 2 13 13 N 1.34775 * 119.99822 * 174.55260 * 11 9 2 14 14 C 1.39729 * 119.99832 * 173.28921 * 13 11 9 15 15 C 1.39012 * 120.04108 * 320.15175 * 14 13 11 16 16 C 1.38148 * 120.06318 * 180.02562 * 15 14 13 17 17 C 1.38188 * 120.13782 * 359.72534 * 16 15 14 18 18 C 1.38919 * 120.08192 * 0.55243 * 17 16 15 19 19 O 1.35752 * 120.02712 * 179.72279 * 18 17 16 20 20 C 1.34835 * 117.00079 * 178.79184 * 19 18 17 21 21 H 1.08004 * 119.99370 * 4.62585 * 20 19 18 22 22 C 1.38647 * 120.00073 * 184.62975 * 20 19 18 23 23 N 1.31561 * 119.99554 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00332 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47161 * 89.99779 * 24 22 20 26 26 H 1.48500 * 109.47542 * 209.99791 * 24 22 20 27 27 H 1.48502 * 109.47223 * 330.00385 * 24 22 20 28 28 C 1.38755 * 119.94152 * 359.44606 * 18 17 16 29 29 H 1.09005 * 109.46527 * 263.36810 * 1 2 3 30 30 H 1.09005 * 109.46707 * 23.36144 * 1 2 3 31 31 H 1.08991 * 109.47776 * 143.36657 * 1 2 3 32 32 H 1.08996 * 109.46762 * 30.00132 * 3 2 1 33 33 H 1.09001 * 109.47218 * 150.00272 * 3 2 1 34 34 H 1.08997 * 109.47750 * 60.00371 * 5 4 3 35 35 H 1.09007 * 109.47070 * 179.97438 * 5 4 3 36 36 H 1.08997 * 109.47588 * 299.99771 * 5 4 3 37 37 H 1.09001 * 109.46954 * 59.99716 * 6 4 3 38 38 H 1.08999 * 109.47448 * 179.97438 * 6 4 3 39 39 H 1.09001 * 109.47464 * 300.00339 * 6 4 3 40 40 H 0.96998 * 120.00580 * 353.28916 * 13 11 9 41 41 H 1.08001 * 119.97201 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.93068 * 179.97438 * 16 15 14 43 43 H 1.07998 * 119.95640 * 180.27809 * 17 16 15 44 44 H 0.97008 * 119.99537 * 180.02562 * 23 22 20 45 45 H 1.07992 * 120.07345 * 180.25374 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2793 0.6441 -2.1638 6 6 1.1156 1.8934 -2.1637 7 6 3.1881 2.9854 -1.4425 8 7 3.7566 3.9689 -1.4424 9 6 2.1388 -1.1673 -0.0005 10 8 3.3522 -1.1674 0.0234 11 6 1.3923 -2.4605 -0.0305 12 8 0.1809 -2.4638 0.0454 13 7 2.0637 -3.6237 -0.1419 14 6 1.3813 -4.8378 -0.0292 15 6 0.3753 -4.9854 0.9187 16 6 -0.2994 -6.1857 1.0308 17 6 0.0194 -7.2412 0.1978 18 6 1.0276 -7.1021 -0.7477 19 8 1.3437 -8.1415 -1.5617 20 6 2.3145 -7.9317 -2.4736 21 1 2.8533 -6.9958 -2.4830 22 6 2.6208 -8.9174 -3.3993 23 7 3.5683 -8.7128 -4.2888 24 14 1.6892 -10.5363 -3.3827 25 1 0.4965 -10.4302 -4.2611 26 1 2.5736 -11.6216 -3.8780 27 1 1.2566 -10.8444 -1.9959 28 6 1.7074 -5.8980 -0.8633 29 1 -0.3632 -0.1187 1.0209 30 1 -0.3633 0.9435 -0.4075 31 1 -0.3634 -0.8246 -0.6131 32 1 1.6085 2.0283 0.5138 33 1 3.1500 1.1382 0.5138 34 1 2.7343 -0.2999 -2.1639 35 1 3.4605 0.9586 -3.1917 36 1 4.2317 0.5137 -1.6501 37 1 0.5266 2.6530 -1.6498 38 1 1.2972 2.2086 -3.1912 39 1 0.5705 0.9495 -2.1637 40 1 3.0207 -3.6182 -0.3002 41 1 0.1208 -4.1608 1.5682 42 1 -1.0803 -6.2981 1.7683 43 1 -0.5129 -8.1768 0.2850 44 1 3.7824 -9.4023 -4.9367 45 1 2.4888 -5.7862 -1.6003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815800665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:33 Heat of formation + Delta-G solvation = -38.917019 kcal Electronic energy + Delta-G solvation = -29655.338480 eV Core-core repulsion = 25446.282515 eV Total energy + Delta-G solvation = -4209.055965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32624 -41.07733 -40.16617 -38.85542 -38.28476 -37.09988 -35.78326 -34.74921 -34.38251 -31.15780 -30.54960 -29.11388 -28.58396 -27.52921 -27.15415 -25.45555 -23.80556 -23.40919 -22.34466 -21.02264 -19.84706 -19.46373 -18.80836 -18.42192 -17.96318 -17.27961 -16.93966 -16.82537 -16.62884 -16.10095 -15.97264 -15.65469 -15.58276 -15.49574 -15.15762 -14.71710 -14.59560 -14.41793 -14.21003 -14.16190 -13.99650 -13.87570 -13.79613 -13.51288 -13.25475 -12.87426 -12.79062 -12.72206 -12.67207 -12.57377 -12.44129 -12.37184 -12.12075 -12.04798 -11.93290 -11.47745 -11.28205 -10.84976 -10.47596 -9.88631 -9.44581 -8.98650 -8.48271 -6.21371 0.00626 0.59587 0.69481 1.10519 1.35152 1.38679 1.55016 1.64458 1.66952 2.04286 2.29509 2.32260 2.78121 2.82287 3.05990 3.13305 3.19960 3.62811 3.69175 3.89763 4.11431 4.28180 4.32306 4.38292 4.39342 4.55252 4.59323 4.61620 4.65774 4.76691 4.79927 4.88017 4.90456 4.92541 5.09863 5.17829 5.23677 5.30338 5.33405 5.35876 5.45072 5.61526 5.76159 5.81562 5.91273 6.13120 6.22258 6.43716 6.59051 6.83131 6.86142 7.58585 8.62943 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015461 B = 0.002422 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.523783 B =11558.951861 C =12783.948768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.569 5.569 3 C 0.124 3.876 4 C 0.025 3.975 5 C -0.139 4.139 6 C -0.147 4.147 7 C 0.245 3.755 8 N -0.475 5.475 9 C 0.514 3.486 10 O -0.529 6.529 11 C 0.506 3.494 12 O -0.502 6.502 13 N -0.642 5.642 14 C 0.177 3.823 15 C -0.180 4.180 16 C -0.049 4.049 17 C -0.194 4.194 18 C 0.138 3.862 19 O -0.238 6.238 20 C -0.398 4.398 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.923 5.923 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.249 4.249 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.423 0.577 41 H 0.136 0.864 42 H 0.166 0.834 43 H 0.136 0.864 44 H 0.284 0.716 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 19.018 10.098 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.301 5.301 3 C 0.000 4.000 4 C 0.020 3.980 5 C -0.197 4.197 6 C -0.205 4.205 7 C -0.073 4.073 8 N -0.150 5.150 9 C 0.295 3.705 10 O -0.406 6.406 11 C 0.289 3.711 12 O -0.377 6.377 13 N -0.289 5.289 14 C 0.083 3.917 15 C -0.200 4.200 16 C -0.068 4.068 17 C -0.213 4.213 18 C 0.088 3.912 19 O -0.146 6.146 20 C -0.474 4.474 21 H 0.100 0.900 22 C -0.188 4.188 23 N -0.563 5.563 24 Si 0.791 3.209 25 H -0.192 1.192 26 H -0.195 1.195 27 H -0.183 1.183 28 C -0.271 4.271 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.147 0.853 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.262 0.738 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.154 0.846 44 H 0.094 0.906 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.803 20.287 10.007 24.273 hybrid contribution 0.837 -1.008 -0.768 1.518 sum -7.966 19.279 9.239 22.814 Atomic orbital electron populations 1.22659 0.75674 1.05597 1.04306 1.47566 1.09128 1.03872 1.69535 1.21734 0.99642 0.84843 0.93771 1.18761 0.95659 0.84673 0.98903 1.21898 0.99968 0.97167 1.00679 1.22093 0.92900 1.04552 1.00915 1.29078 0.92421 0.93772 0.92027 1.81274 1.10752 1.13488 1.09522 1.19719 0.87110 0.85075 0.78554 1.90808 1.13722 1.87166 1.48866 1.20393 0.87695 0.85277 0.77710 1.90731 1.13404 1.86813 1.46759 1.43185 1.13056 1.03382 1.69303 1.17391 0.95249 0.84194 0.94842 1.20876 0.99601 0.99333 1.00224 1.21011 0.98188 0.90459 0.97116 1.20615 0.99987 1.01996 0.98743 1.19383 0.93992 0.86630 0.91209 1.83553 1.52426 1.34846 1.43734 1.20683 1.12313 1.04592 1.09857 0.89981 1.25265 0.97152 1.02551 0.93807 1.69734 1.31236 1.36796 1.18544 0.85235 0.78434 0.77640 0.79568 1.19164 1.19516 1.18314 1.20960 1.07145 0.94667 1.04296 0.91118 0.87507 0.89280 0.85331 0.89229 0.91743 0.91141 0.92086 0.89316 0.91205 0.89510 0.73841 0.84589 0.81669 0.84608 0.90617 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.12 127.77 1.04 1.60 16 2 N -0.57 -7.49 2.40 -848.46 -2.04 -9.53 16 3 C 0.12 1.24 4.53 86.38 0.39 1.64 16 4 C 0.02 0.28 0.77 -53.99 -0.04 0.24 16 5 C -0.14 -2.13 7.11 71.98 0.51 -1.62 16 6 C -0.15 -1.01 7.20 71.98 0.52 -0.49 16 7 C 0.25 3.93 13.86 89.44 1.24 5.17 16 8 N -0.48 -10.52 18.54 20.01 0.37 -10.14 16 9 C 0.51 10.43 6.10 87.24 0.53 10.96 16 10 O -0.53 -12.81 14.38 -3.27 -0.05 -12.85 16 11 C 0.51 12.48 7.43 87.24 0.65 13.13 16 12 O -0.50 -12.96 11.40 -3.33 -0.04 -13.00 16 13 N -0.64 -18.19 5.29 -304.89 -1.61 -19.81 16 14 C 0.18 5.98 6.13 38.20 0.23 6.22 16 15 C -0.18 -5.38 8.66 22.43 0.19 -5.18 16 16 C -0.05 -1.40 10.03 22.24 0.22 -1.18 16 17 C -0.19 -6.83 9.99 22.42 0.22 -6.61 16 18 C 0.14 6.09 6.65 22.56 0.15 6.24 16 19 O -0.24 -12.37 8.58 -22.81 -0.20 -12.56 16 20 C -0.40 -22.63 9.94 67.92 0.68 -21.96 16 21 H 0.08 4.88 5.43 -2.91 -0.02 4.86 16 22 C 0.01 0.61 5.49 84.83 0.47 1.08 16 23 N -0.92 -54.00 13.96 21.61 0.30 -53.70 16 24 Si 0.97 44.13 28.62 68.60 1.96 46.09 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 28 C -0.25 -10.39 9.09 22.52 0.20 -10.18 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.11 0.33 6.35 -2.38 -0.02 0.31 16 31 H 0.09 1.28 5.55 -2.39 -0.01 1.27 16 32 H 0.13 0.51 8.07 -2.39 -0.02 0.49 16 33 H 0.09 1.16 7.40 -2.39 -0.02 1.15 16 34 H 0.06 1.12 6.16 -2.39 -0.01 1.10 16 35 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.06 1.12 7.76 -2.39 -0.02 1.10 16 37 H 0.09 0.28 8.07 -2.39 -0.02 0.26 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.58 6.09 -2.39 -0.01 0.57 16 40 H 0.42 11.29 8.34 -92.71 -0.77 10.52 16 41 H 0.14 3.59 6.94 -2.91 -0.02 3.57 16 42 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 45 H 0.12 5.31 5.62 -2.91 -0.02 5.29 16 Total: -1.00 -70.87 376.23 6.20 -64.67 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.29 Total: 21.79 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 7.21 Total: -0.95 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -2.98 Total: -93.18 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.28 Total: -38.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.96 Total: 46.09 kcal Total: -70.87 6.20 -64.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815800665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.756 kcal (2) G-P(sol) polarization free energy of solvation -70.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds