Wall clock time and date at job start Wed Apr 1 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47106 * 2 1 4 4 O 1.42902 * 109.46714 * 240.00022 * 2 1 3 5 5 C 1.52994 * 109.47234 * 120.00414 * 2 1 3 6 6 H 1.09001 * 109.47636 * 65.00045 * 5 2 1 7 7 O 1.42903 * 109.47098 * 304.99700 * 5 2 1 8 8 C 1.35900 * 116.99947 * 94.36330 * 7 5 2 9 9 C 1.38730 * 120.05285 * 181.67872 * 8 7 5 10 10 C 1.38144 * 119.93958 * 179.74015 * 9 8 7 11 11 C 1.38260 * 120.05630 * 0.50891 * 10 9 8 12 12 C 1.38263 * 120.11612 * 359.76701 * 11 10 9 13 13 C 1.38147 * 120.05147 * 359.97438 * 12 11 10 14 14 C 1.50707 * 109.47212 * 184.99691 * 5 2 1 15 15 O 1.21303 * 119.99827 * 114.99664 * 14 5 2 16 16 N 1.34778 * 119.99982 * 295.00275 * 14 5 2 17 17 C 1.40597 * 119.99907 * 179.97438 * 16 14 5 18 18 C 1.40652 * 126.08109 * 359.97164 * 17 16 14 19 19 N 1.30907 * 108.38494 * 179.77827 * 18 17 16 20 20 N 1.40068 * 108.40605 * 0.38296 * 19 18 17 21 21 C 1.37321 * 126.06776 * 179.88009 * 20 19 18 22 22 H 1.08002 * 120.00182 * 179.69120 * 21 20 19 23 23 C 1.38987 * 119.99976 * 359.41018 * 21 20 19 24 24 N 1.31297 * 120.00082 * 0.27853 * 23 21 20 25 25 Si 1.86803 * 120.00034 * 180.27735 * 23 21 20 26 26 H 1.48495 * 109.47243 * 59.99809 * 25 23 21 27 27 H 1.48494 * 109.47170 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46942 * 300.00238 * 25 23 21 29 29 C 1.35675 * 126.08118 * 179.97438 * 17 16 14 30 30 H 1.09004 * 109.46578 * 299.99710 * 1 2 3 31 31 H 1.08997 * 109.47015 * 59.99673 * 1 2 3 32 32 H 1.08996 * 109.47231 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47450 * 300.00060 * 3 2 1 35 35 H 1.08994 * 109.47026 * 60.00497 * 3 2 1 36 36 H 0.96695 * 114.00651 * 299.99754 * 4 2 1 37 37 H 1.08002 * 120.03006 * 359.97438 * 9 8 7 38 38 H 1.08007 * 119.97165 * 180.23362 * 10 9 8 39 39 H 1.08009 * 119.94430 * 179.74198 * 11 10 9 40 40 H 1.07999 * 119.97980 * 179.97438 * 12 11 10 41 41 H 1.08001 * 120.03192 * 179.97438 * 13 12 11 42 42 H 0.96997 * 119.99940 * 359.97438 * 16 14 5 43 43 H 1.08000 * 125.80261 * 0.02562 * 18 17 16 44 44 H 0.96998 * 119.99784 * 179.97438 * 24 23 21 45 45 H 1.07998 * 126.24507 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2491 6 1 1.7517 -1.7716 1.2055 7 8 1.4703 -0.1189 2.4130 8 6 0.3374 -0.6832 2.9080 9 6 -0.2885 -0.1288 4.0151 10 6 -1.4429 -0.7011 4.5130 11 6 -1.9688 -1.8316 3.9155 12 6 -1.3438 -2.3894 2.8155 13 6 -0.1921 -1.8177 2.3105 14 6 3.5420 -0.6150 1.3126 15 8 4.0688 0.0023 2.2142 16 7 4.2999 -1.2057 0.3675 17 6 5.7011 -1.1061 0.4264 18 6 6.4426 -0.4252 1.4087 19 7 7.7151 -0.5587 1.1319 20 7 7.8358 -1.3194 -0.0380 21 6 9.0107 -1.6752 -0.6534 22 1 8.9898 -2.2713 -1.5538 23 6 10.2266 -1.2633 -0.1208 24 7 10.2521 -0.5387 0.9738 25 14 11.8246 -1.7408 -0.9622 26 1 11.8369 -1.1996 -2.3450 27 1 12.9708 -1.1822 -0.2012 28 1 11.9363 -3.2209 -1.0090 29 6 6.5785 -1.6497 -0.4542 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.7210 -1.5952 -1.2330 37 1 0.1244 0.7517 4.4849 38 1 -1.9327 -0.2677 5.3726 39 1 -2.8693 -2.2800 4.3088 40 1 -1.7563 -3.2727 2.3507 41 1 0.2961 -2.2540 1.4515 42 1 3.8787 -1.6996 -0.3533 43 1 6.0320 0.1126 2.2505 44 1 11.1007 -0.2516 1.3457 45 1 6.3278 -2.2358 -1.3260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824748218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:12 Heat of formation + Delta-G solvation = 1.745696 kcal Electronic energy + Delta-G solvation = -30424.949985 eV Core-core repulsion = 26217.657288 eV Total energy + Delta-G solvation = -4207.292697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20196 -39.77565 -38.91424 -37.67158 -37.09419 -34.15471 -33.11773 -32.60131 -31.24188 -30.39368 -30.15993 -28.57748 -27.50674 -27.03550 -24.74766 -22.99627 -22.52364 -21.47622 -20.87404 -20.09737 -19.41678 -18.63926 -17.81043 -17.25984 -16.91056 -16.20648 -15.80987 -15.60104 -15.42138 -15.05368 -14.81688 -14.51675 -14.30652 -14.05117 -13.73380 -13.67390 -13.40356 -13.07033 -12.87721 -12.75735 -12.62322 -12.31615 -12.26604 -12.10313 -11.86008 -11.81006 -11.65864 -11.41054 -11.23058 -11.11219 -10.94949 -10.77458 -10.54630 -10.38007 -10.10885 -9.24495 -9.14711 -9.13356 -8.78048 -8.36085 -8.03530 -6.67447 -6.53380 -4.20539 1.07730 1.20612 2.60759 2.75131 3.02891 3.06340 3.10247 3.51864 3.65872 3.70470 3.86350 4.00746 4.20429 4.32806 4.52428 4.54690 4.60636 4.67124 4.80888 4.85788 4.96303 5.04561 5.11879 5.16602 5.26118 5.37619 5.40589 5.53639 5.72216 5.75092 5.81297 5.90470 6.06587 6.14152 6.24939 6.26902 6.28217 6.46022 6.51508 6.90509 6.97157 7.09831 7.19741 7.25926 7.30795 7.87935 8.18616 8.29768 8.63896 8.84495 9.40217 9.69417 10.42588 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022487 B = 0.002394 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.838232 B =11691.427541 C =12136.781994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 C -0.139 4.139 4 O -0.541 6.541 5 C 0.043 3.957 6 H 0.098 0.902 7 O -0.270 6.270 8 C 0.134 3.866 9 C -0.151 4.151 10 C -0.079 4.079 11 C -0.163 4.163 12 C -0.079 4.079 13 C -0.214 4.214 14 C 0.504 3.496 15 O -0.515 6.515 16 N -0.608 5.608 17 C -0.057 4.057 18 C -0.034 4.034 19 N -0.260 5.260 20 N -0.142 5.142 21 C -0.323 4.323 22 H 0.116 0.884 23 C 0.046 3.954 24 N -0.770 5.770 25 Si 0.935 3.065 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.267 1.267 29 C -0.081 4.081 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.374 0.626 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.398 0.602 43 H 0.175 0.825 44 H 0.275 0.725 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.484 -3.223 -0.774 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.079 3.921 3 C -0.196 4.196 4 O -0.347 6.347 5 C -0.018 4.018 6 H 0.115 0.885 7 O -0.182 6.182 8 C 0.089 3.911 9 C -0.169 4.169 10 C -0.097 4.097 11 C -0.181 4.181 12 C -0.097 4.097 13 C -0.233 4.233 14 C 0.288 3.712 15 O -0.391 6.391 16 N -0.253 5.253 17 C -0.162 4.162 18 C -0.209 4.209 19 N -0.091 5.091 20 N 0.090 4.910 21 C -0.455 4.455 22 H 0.133 0.867 23 C -0.171 4.171 24 N -0.397 5.397 25 Si 0.758 3.242 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.192 1.192 29 C -0.232 4.232 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.221 0.779 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.233 0.767 43 H 0.192 0.808 44 H 0.086 0.914 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.355 -1.608 0.365 21.419 hybrid contribution -0.751 -1.527 -1.066 2.008 sum -22.106 -3.134 -0.701 22.338 Atomic orbital electron populations 1.22655 0.94542 1.02863 1.03735 1.21547 0.93394 0.94312 0.82873 1.21769 1.03010 0.92107 1.02758 1.86740 1.76895 1.28735 1.42301 1.23106 0.93447 0.98988 0.86250 0.88498 1.86261 1.37361 1.52572 1.41969 1.19135 0.86429 0.92109 0.93474 1.20483 0.97057 1.02765 0.96617 1.20979 0.94553 0.95265 0.98944 1.21051 1.01457 0.97784 0.97819 1.20915 0.94363 0.98808 0.95639 1.21280 0.99937 0.98297 1.03774 1.19557 0.86867 0.81521 0.83295 1.90640 1.72846 1.41099 1.34478 1.42324 1.04531 1.51845 1.26591 1.17224 0.80973 1.14743 1.03309 1.24114 0.90636 1.04825 1.01368 1.78258 1.15491 1.15324 1.00014 1.44537 1.03253 1.28534 1.14657 1.19816 0.80967 1.34750 1.10016 0.86676 1.25641 1.00146 0.95505 0.95826 1.70210 1.27449 1.25979 1.16030 0.85900 0.79627 0.79313 0.79326 1.19164 1.20154 1.19180 1.21234 0.85333 1.12864 1.03817 0.90855 0.90979 0.91862 0.90968 0.91516 0.90290 0.77905 0.84937 0.85377 0.86022 0.85856 0.85413 0.76717 0.80799 0.91421 0.83688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 7.38 37.16 0.27 -1.28 16 2 C 0.12 1.32 0.93 -90.62 -0.08 1.23 16 3 C -0.14 -1.83 8.42 37.16 0.31 -1.52 16 4 O -0.54 -5.44 11.05 -35.23 -0.39 -5.83 16 5 C 0.04 0.55 2.03 -27.88 -0.06 0.50 16 6 H 0.10 0.98 5.38 -51.93 -0.28 0.70 16 7 O -0.27 -3.81 8.53 -39.28 -0.34 -4.14 16 8 C 0.13 1.57 5.10 -39.22 -0.20 1.37 16 9 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 10 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 11 C -0.16 -1.30 10.04 -39.56 -0.40 -1.69 16 12 C -0.08 -0.64 10.04 -39.61 -0.40 -1.04 16 13 C -0.21 -2.03 7.13 -39.43 -0.28 -2.31 16 14 C 0.50 9.07 5.64 -10.98 -0.06 9.01 16 15 O -0.52 -11.58 13.66 -14.32 -0.20 -11.78 16 16 N -0.61 -10.94 5.18 -10.00 -0.05 -10.99 16 17 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 18 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 19 N -0.26 -7.67 10.40 30.80 0.32 -7.35 16 20 N -0.14 -3.94 3.74 -11.41 -0.04 -3.99 16 21 C -0.32 -8.62 10.25 -14.81 -0.15 -8.78 16 22 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 23 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 24 N -0.77 -21.77 11.81 55.49 0.66 -21.12 16 25 Si 0.93 19.08 29.55 -169.99 -5.02 14.06 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 28 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 29 C -0.08 -1.94 11.49 -16.40 -0.19 -2.13 16 30 H 0.07 0.70 6.49 -51.93 -0.34 0.36 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.43 6.34 -51.93 -0.33 0.10 16 33 H 0.07 1.18 7.08 -51.93 -0.37 0.82 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.02 7.82 -51.93 -0.41 0.62 16 36 H 0.37 2.00 9.04 45.56 0.41 2.42 16 37 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 1.00 4.86 -52.49 -0.26 0.74 16 42 H 0.40 5.59 7.27 -40.82 -0.30 5.29 16 43 H 0.18 4.68 5.92 -52.49 -0.31 4.37 16 44 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -35.72 369.90 -7.05 -42.77 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -4.68 Total: 14.40 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.88 Total: -11.62 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.88 Total: -43.44 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.92 Total: -21.75 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.72 -7.05 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824748218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.517 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds