Wall clock time and date at job start Wed Apr 1 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35975 * 117.00104 * 2 1 4 4 C 1.38705 * 120.00037 * 179.97438 * 3 2 1 5 5 C 1.38132 * 120.00218 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99859 * 0.02562 * 5 4 3 7 7 O 1.35986 * 120.00069 * 179.97438 * 6 5 4 8 8 C 1.42894 * 116.99856 * 175.09029 * 7 6 5 9 9 C 1.52996 * 109.47622 * 300.97958 * 8 7 6 10 10 C 1.53003 * 109.46844 * 180.98157 * 8 7 6 11 11 C 1.50698 * 109.47182 * 60.98352 * 8 7 6 12 12 O 1.21302 * 120.00239 * 359.97438 * 11 8 7 13 13 N 1.34781 * 119.99910 * 179.97438 * 11 8 7 14 14 C 1.40595 * 119.99943 * 179.97438 * 13 11 8 15 15 C 1.40644 * 126.08210 * 0.02562 * 14 13 11 16 16 N 1.30913 * 108.39055 * 179.71516 * 15 14 13 17 17 N 1.40076 * 108.40080 * 0.44701 * 16 15 14 18 18 C 1.37319 * 126.06798 * 179.81714 * 17 16 15 19 19 H 1.07996 * 120.00122 * 171.38400 * 18 17 16 20 20 C 1.38989 * 120.00063 * 351.65555 * 18 17 16 21 21 N 1.31297 * 120.00012 * 7.79307 * 20 18 17 22 22 Si 1.86803 * 120.00132 * 187.78635 * 20 18 17 23 23 H 1.48493 * 109.46971 * 94.93091 * 22 20 18 24 24 H 1.48501 * 109.47011 * 214.93036 * 22 20 18 25 25 H 1.48498 * 109.46855 * 334.92664 * 22 20 18 26 26 C 1.35680 * 126.08310 * 179.97438 * 14 13 11 27 27 C 1.38703 * 119.99922 * 0.24666 * 6 5 4 28 28 C 1.38131 * 119.99940 * 359.49806 * 27 6 5 29 29 H 1.08995 * 109.47245 * 300.00287 * 1 2 3 30 30 H 1.09009 * 109.46795 * 60.00095 * 1 2 3 31 31 H 1.08997 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99968 * 359.97438 * 4 3 2 33 33 H 1.07992 * 120.00092 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47493 * 173.55896 * 9 8 7 35 35 H 1.08997 * 109.46910 * 293.55945 * 9 8 7 36 36 H 1.09000 * 109.46947 * 53.55892 * 9 8 7 37 37 H 1.09008 * 109.47023 * 295.39467 * 10 8 7 38 38 H 1.08995 * 109.47368 * 55.39450 * 10 8 7 39 39 H 1.09001 * 109.47185 * 175.39616 * 10 8 7 40 40 H 0.96994 * 120.00209 * 359.97438 * 13 11 8 41 41 H 1.07997 * 125.80832 * 0.02562 * 15 14 13 42 42 H 0.96997 * 120.00335 * 180.02562 * 21 20 18 43 43 H 1.08003 * 126.24364 * 0.03935 * 26 14 13 44 44 H 1.08002 * 119.99669 * 179.73365 * 27 6 5 45 45 H 1.08000 * 119.99951 * 180.23331 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0586 2.5148 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9206 4.8897 0.0027 8 6 3.0849 6.0437 -0.1058 9 6 2.2818 5.9715 -1.4060 10 6 3.9533 7.3034 -0.1121 11 6 2.1394 6.0912 1.0667 12 8 2.1772 5.2220 1.9119 13 7 1.2518 7.0995 1.1762 14 6 0.3693 7.1436 2.2698 15 6 0.3022 6.2084 3.3182 16 7 -0.6350 6.5872 4.1501 17 7 -1.2080 7.7687 3.6625 18 6 -2.2274 8.4757 4.2512 19 1 -2.5025 9.4471 3.8678 20 6 -2.9015 7.9436 5.3440 21 7 -2.4683 6.8404 5.9090 22 14 -4.4237 8.7981 6.0091 23 1 -5.6366 8.1857 5.4100 24 1 -4.4707 8.6472 7.4856 25 1 -4.3737 10.2407 5.6603 26 6 -0.5684 8.0963 2.5021 27 6 1.9181 3.6055 0.0068 28 6 1.2910 2.3748 0.0009 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0197 0.3783 0.0014 33 1 5.1371 2.5713 0.0019 34 1 1.5628 6.7902 -1.4349 35 1 2.9589 6.0524 -2.2563 36 1 1.7514 5.0204 -1.4531 37 1 4.4630 7.3981 0.8468 38 1 4.6917 7.2318 -0.9106 39 1 3.3237 8.1779 -0.2768 40 1 1.2218 7.7948 0.5006 41 1 0.9221 5.3302 3.4222 42 1 -2.9389 6.4688 6.6714 43 1 -0.7723 8.9563 1.8814 44 1 1.3300 4.5113 0.0115 45 1 0.2125 2.3183 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824754529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:21 Heat of formation + Delta-G solvation = 23.443784 kcal Electronic energy + Delta-G solvation = -30512.298969 eV Core-core repulsion = 26305.947172 eV Total energy + Delta-G solvation = -4206.351797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29023 -39.84393 -39.35612 -37.89552 -36.36079 -34.49799 -33.61935 -32.72108 -31.09592 -30.26346 -29.24867 -27.85529 -27.77325 -26.77985 -25.09384 -23.77510 -22.49612 -21.99759 -20.99081 -20.10067 -19.39850 -18.35927 -17.80699 -17.40571 -16.60691 -16.34379 -15.67715 -15.51201 -15.32418 -15.24612 -14.77780 -14.38787 -14.25608 -14.00194 -13.88325 -13.53364 -13.36448 -13.00691 -12.96833 -12.79578 -12.48653 -12.40952 -12.31182 -12.24515 -11.89013 -11.78557 -11.69871 -11.45062 -11.35724 -11.18068 -10.94712 -10.60342 -10.55570 -10.46111 -10.15607 -9.23132 -9.14044 -8.87188 -8.83663 -8.10368 -7.52332 -6.76356 -6.60671 -4.27777 1.40503 1.61449 2.66759 2.96632 3.01921 3.07660 3.11087 3.35746 3.42531 3.61632 3.81973 3.87334 4.34272 4.54881 4.58293 4.68639 4.86025 4.92984 4.96184 4.99057 5.09740 5.16229 5.21759 5.30358 5.36125 5.42160 5.44434 5.52772 5.58210 5.60938 5.85016 5.92271 5.96674 6.15036 6.18639 6.39411 6.43225 6.46356 6.65643 6.82662 6.90866 7.03761 7.18497 7.31474 7.55122 7.81619 8.07492 8.21779 8.55512 8.74704 9.33397 9.62127 10.35680 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003049 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.734261 B = 9181.173689 C =10908.414715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.087 3.913 4 C -0.121 4.121 5 C -0.115 4.115 6 C 0.108 3.892 7 O -0.288 6.288 8 C 0.102 3.898 9 C -0.196 4.196 10 C -0.136 4.136 11 C 0.473 3.527 12 O -0.512 6.512 13 N -0.617 5.617 14 C -0.063 4.063 15 C -0.030 4.030 16 N -0.261 5.261 17 N -0.142 5.142 18 C -0.325 4.325 19 H 0.116 0.884 20 C 0.048 3.952 21 N -0.768 5.768 22 Si 0.934 3.066 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.082 4.082 27 C -0.136 4.136 28 C -0.170 4.170 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.175 0.825 42 H 0.275 0.725 43 H 0.145 0.855 44 H 0.135 0.865 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.604 -3.721 -15.696 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.236 6.236 3 C 0.043 3.957 4 C -0.139 4.139 5 C -0.134 4.134 6 C 0.063 3.937 7 O -0.201 6.201 8 C 0.059 3.941 9 C -0.253 4.253 10 C -0.193 4.193 11 C 0.257 3.743 12 O -0.388 6.388 13 N -0.261 5.261 14 C -0.168 4.168 15 C -0.206 4.206 16 N -0.092 5.092 17 N 0.091 4.909 18 C -0.457 4.457 19 H 0.134 0.866 20 C -0.170 4.170 21 N -0.395 5.395 22 Si 0.758 3.242 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.233 4.233 27 C -0.155 4.155 28 C -0.189 4.189 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.229 0.771 41 H 0.192 0.808 42 H 0.086 0.914 43 H 0.163 0.837 44 H 0.152 0.848 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.261 -4.929 -13.780 16.337 hybrid contribution -0.841 1.260 -0.708 1.673 sum 6.420 -3.668 -14.488 16.266 Atomic orbital electron populations 1.23015 0.78683 1.03566 1.01491 1.86023 1.21107 1.26924 1.89508 1.18861 0.92263 0.84043 1.00540 1.20082 0.91210 0.97562 1.05063 1.20097 0.99822 0.88959 1.04515 1.18661 0.91048 0.85042 0.98937 1.86148 1.34176 1.11382 1.88381 1.21683 0.91586 0.87121 0.93672 1.22829 1.01251 1.04904 0.96285 1.21786 1.00071 0.93062 1.04374 1.20768 0.82383 0.82869 0.88240 1.90713 1.69159 1.37540 1.41379 1.42540 1.33919 1.25448 1.24201 1.17260 1.01972 1.02434 0.95126 1.24097 1.01068 1.01533 0.93914 1.78268 1.11261 0.99281 1.20391 1.44555 1.20007 1.14782 1.11567 1.19877 1.09179 1.02476 1.14209 0.86600 1.25646 0.99174 0.96078 0.96085 1.70225 1.35321 1.16658 1.17257 0.85821 0.80311 0.79629 0.78457 1.19627 1.20084 1.18766 1.21257 1.02910 1.03452 0.95677 1.21340 0.93545 0.98472 1.02110 1.21035 1.00008 0.91758 1.06119 0.92501 0.92921 0.88509 0.84892 0.84806 0.90368 0.90278 0.89773 0.90781 0.90350 0.89903 0.77087 0.80848 0.91431 0.83703 0.84774 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.33 10.50 -19.66 -0.21 -4.54 16 3 C 0.09 1.27 6.69 -39.24 -0.26 1.01 16 4 C -0.12 -1.62 9.98 -39.45 -0.39 -2.01 16 5 C -0.12 -1.59 9.98 -39.45 -0.39 -1.98 16 6 C 0.11 1.67 5.55 -39.24 -0.22 1.45 16 7 O -0.29 -4.30 9.63 -39.61 -0.38 -4.68 16 8 C 0.10 1.32 0.96 -91.77 -0.09 1.23 16 9 C -0.20 -1.99 8.10 37.16 0.30 -1.69 16 10 C -0.14 -1.34 8.70 37.16 0.32 -1.01 16 11 C 0.47 8.09 4.56 -10.98 -0.05 8.04 16 12 O -0.51 -10.97 11.01 -14.37 -0.16 -11.13 16 13 N -0.62 -10.40 5.22 -10.00 -0.05 -10.45 16 14 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 15 C -0.03 -0.80 10.85 -17.04 -0.18 -0.98 16 16 N -0.26 -7.54 10.44 30.80 0.32 -7.22 16 17 N -0.14 -3.83 3.74 -11.41 -0.04 -3.87 16 18 C -0.33 -8.50 10.23 -14.82 -0.15 -8.65 16 19 H 0.12 2.70 7.84 -52.49 -0.41 2.29 16 20 C 0.05 1.22 5.49 -17.50 -0.10 1.12 16 21 N -0.77 -21.35 11.86 55.50 0.66 -20.69 16 22 Si 0.93 18.72 29.56 -169.99 -5.02 13.69 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 27 C -0.14 -2.17 5.59 -39.45 -0.22 -2.39 16 28 C -0.17 -2.57 9.03 -39.45 -0.36 -2.93 16 29 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.05 0.48 7.66 -51.92 -0.40 0.08 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.08 0.66 7.39 -51.93 -0.38 0.27 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.97 4.70 -51.93 -0.24 0.73 16 37 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.63 7.69 -51.93 -0.40 0.23 16 40 H 0.40 5.01 7.68 -40.82 -0.31 4.70 16 41 H 0.17 4.58 5.92 -52.49 -0.31 4.27 16 42 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.15 2.73 8.06 -52.48 -0.42 2.31 16 44 H 0.13 2.20 3.75 -52.49 -0.20 2.01 16 45 H 0.13 1.74 6.29 -52.49 -0.33 1.41 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -34.73 368.83 -6.37 -41.10 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.48 Total: 13.80 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.57 Total: -11.57 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.88 Total: -42.24 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.75 Total: -20.35 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.73 -6.37 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824754529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.545 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds