Wall clock time and date at job start Wed Apr 1 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35975 * 117.00104 * 2 1 4 4 C 1.38705 * 120.00037 * 179.97438 * 3 2 1 5 5 C 1.38132 * 120.00218 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99859 * 0.02562 * 5 4 3 7 7 O 1.35986 * 120.00069 * 179.97438 * 6 5 4 8 8 C 1.42894 * 116.99856 * 175.09029 * 7 6 5 9 9 C 1.52996 * 109.47622 * 300.97958 * 8 7 6 10 10 C 1.53003 * 109.46844 * 180.98157 * 8 7 6 11 11 C 1.50698 * 109.47182 * 60.98352 * 8 7 6 12 12 O 1.21302 * 120.00239 * 359.97438 * 11 8 7 13 13 N 1.34781 * 119.99910 * 179.97438 * 11 8 7 14 14 C 1.40595 * 119.99943 * 179.97438 * 13 11 8 15 15 C 1.40644 * 126.08210 * 0.02562 * 14 13 11 16 16 N 1.30913 * 108.39055 * 179.71516 * 15 14 13 17 17 N 1.40076 * 108.40080 * 0.44701 * 16 15 14 18 18 C 1.37319 * 126.06798 * 179.81714 * 17 16 15 19 19 H 1.07996 * 120.00122 * 171.38400 * 18 17 16 20 20 C 1.38989 * 120.00063 * 351.65555 * 18 17 16 21 21 N 1.31297 * 120.00012 * 7.79307 * 20 18 17 22 22 Si 1.86803 * 120.00132 * 187.78635 * 20 18 17 23 23 H 1.48493 * 109.46971 * 94.93091 * 22 20 18 24 24 H 1.48501 * 109.47011 * 214.93036 * 22 20 18 25 25 H 1.48498 * 109.46855 * 334.92664 * 22 20 18 26 26 C 1.35680 * 126.08310 * 179.97438 * 14 13 11 27 27 C 1.38703 * 119.99922 * 0.24666 * 6 5 4 28 28 C 1.38131 * 119.99940 * 359.49806 * 27 6 5 29 29 H 1.08995 * 109.47245 * 300.00287 * 1 2 3 30 30 H 1.09009 * 109.46795 * 60.00095 * 1 2 3 31 31 H 1.08997 * 109.47079 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99968 * 359.97438 * 4 3 2 33 33 H 1.07992 * 120.00092 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47493 * 173.55896 * 9 8 7 35 35 H 1.08997 * 109.46910 * 293.55945 * 9 8 7 36 36 H 1.09000 * 109.46947 * 53.55892 * 9 8 7 37 37 H 1.09008 * 109.47023 * 295.39467 * 10 8 7 38 38 H 1.08995 * 109.47368 * 55.39450 * 10 8 7 39 39 H 1.09001 * 109.47185 * 175.39616 * 10 8 7 40 40 H 0.96994 * 120.00209 * 359.97438 * 13 11 8 41 41 H 1.07997 * 125.80832 * 0.02562 * 15 14 13 42 42 H 0.96997 * 120.00335 * 180.02562 * 21 20 18 43 43 H 1.08003 * 126.24364 * 0.03935 * 26 14 13 44 44 H 1.08002 * 119.99669 * 179.73365 * 27 6 5 45 45 H 1.08000 * 119.99951 * 180.23331 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0586 2.5148 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9206 4.8897 0.0027 8 6 3.0849 6.0437 -0.1058 9 6 2.2818 5.9715 -1.4060 10 6 3.9533 7.3034 -0.1121 11 6 2.1394 6.0912 1.0667 12 8 2.1772 5.2220 1.9119 13 7 1.2518 7.0995 1.1762 14 6 0.3693 7.1436 2.2698 15 6 0.3022 6.2084 3.3182 16 7 -0.6350 6.5872 4.1501 17 7 -1.2080 7.7687 3.6625 18 6 -2.2274 8.4757 4.2512 19 1 -2.5025 9.4471 3.8678 20 6 -2.9015 7.9436 5.3440 21 7 -2.4683 6.8404 5.9090 22 14 -4.4237 8.7981 6.0091 23 1 -5.6366 8.1857 5.4100 24 1 -4.4707 8.6472 7.4856 25 1 -4.3737 10.2407 5.6603 26 6 -0.5684 8.0963 2.5021 27 6 1.9181 3.6055 0.0068 28 6 1.2910 2.3748 0.0009 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0197 0.3783 0.0014 33 1 5.1371 2.5713 0.0019 34 1 1.5628 6.7902 -1.4349 35 1 2.9589 6.0524 -2.2563 36 1 1.7514 5.0204 -1.4531 37 1 4.4630 7.3981 0.8468 38 1 4.6917 7.2318 -0.9106 39 1 3.3237 8.1779 -0.2768 40 1 1.2218 7.7948 0.5006 41 1 0.9221 5.3302 3.4222 42 1 -2.9389 6.4688 6.6714 43 1 -0.7723 8.9563 1.8814 44 1 1.3300 4.5113 0.0115 45 1 0.2125 2.3183 0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824754529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:20 Heat of formation + Delta-G solvation = 0.269666 kcal Electronic energy + Delta-G solvation = -30513.303874 eV Core-core repulsion = 26305.947172 eV Total energy + Delta-G solvation = -4207.356702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52082 -41.46079 -40.64361 -39.23512 -37.44974 -36.05489 -35.25810 -34.03474 -32.24826 -32.15918 -30.31670 -29.55401 -28.68854 -27.68059 -26.93038 -24.97673 -23.74070 -23.08036 -22.83485 -21.56007 -21.02933 -19.64172 -19.13078 -18.92146 -17.71468 -17.52254 -17.38722 -16.83949 -16.66175 -16.49702 -16.11961 -15.60873 -15.51365 -15.50100 -15.07636 -14.96035 -14.84946 -14.52296 -14.10733 -13.80824 -13.55187 -13.43200 -13.36830 -13.27258 -13.18047 -13.11598 -12.99907 -12.88098 -12.75705 -12.68196 -12.22049 -12.07608 -11.84146 -11.60877 -11.49607 -11.04168 -10.82990 -10.51746 -10.11732 -9.99418 -8.66421 -8.54305 -8.49157 -6.26408 0.28777 0.48505 1.16191 1.38931 1.44775 1.57176 1.82951 1.92711 2.12088 2.22654 2.40414 2.47737 2.74533 2.86627 3.06106 3.64057 3.66418 3.72132 3.78357 3.86293 4.16282 4.28966 4.32461 4.38504 4.41850 4.50547 4.56783 4.58856 4.64608 4.67429 4.71717 4.76997 4.87266 4.99598 5.03712 5.09759 5.11403 5.16893 5.27357 5.31155 5.36235 5.41583 5.58254 5.94546 6.21894 6.29873 6.46510 6.66990 6.71983 7.29842 7.45564 7.66218 8.50402 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003049 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.734261 B = 9181.173689 C =10908.414715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.330 6.330 3 C 0.079 3.921 4 C -0.122 4.122 5 C -0.117 4.117 6 C 0.091 3.909 7 O -0.296 6.296 8 C 0.106 3.894 9 C -0.192 4.192 10 C -0.135 4.135 11 C 0.472 3.528 12 O -0.558 6.558 13 N -0.606 5.606 14 C -0.043 4.043 15 C -0.058 4.058 16 N -0.312 5.312 17 N -0.167 5.167 18 C -0.355 4.355 19 H 0.142 0.858 20 C -0.005 4.005 21 N -0.825 5.825 22 Si 1.018 2.982 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.241 1.241 26 C -0.076 4.076 27 C -0.149 4.149 28 C -0.187 4.187 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.420 0.580 41 H 0.160 0.840 42 H 0.276 0.724 43 H 0.191 0.809 44 H 0.124 0.876 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -1.943 -18.152 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.034 3.966 4 C -0.140 4.140 5 C -0.135 4.135 6 C 0.047 3.953 7 O -0.210 6.210 8 C 0.064 3.936 9 C -0.248 4.248 10 C -0.192 4.192 11 C 0.259 3.741 12 O -0.436 6.436 13 N -0.253 5.253 14 C -0.149 4.149 15 C -0.233 4.233 16 N -0.144 5.144 17 N 0.064 4.936 18 C -0.486 4.486 19 H 0.159 0.841 20 C -0.217 4.217 21 N -0.453 5.453 22 Si 0.837 3.163 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.164 1.164 26 C -0.226 4.226 27 C -0.168 4.168 28 C -0.206 4.206 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.258 0.742 41 H 0.177 0.823 42 H 0.085 0.915 43 H 0.208 0.792 44 H 0.142 0.858 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.455 -3.118 -16.301 18.194 hybrid contribution -0.778 0.631 -0.049 1.003 sum 6.677 -2.487 -16.350 17.835 Atomic orbital electron populations 1.23252 0.77188 1.05443 1.01482 1.86008 1.22704 1.26390 1.89370 1.19073 0.92930 0.84194 1.00427 1.20434 0.91082 0.98491 1.03991 1.20448 1.01009 0.88555 1.03514 1.18890 0.91046 0.85842 0.99531 1.86139 1.34759 1.11662 1.88408 1.21957 0.91339 0.87775 0.92533 1.22842 1.01775 1.04898 0.95330 1.21922 1.00590 0.92135 1.04518 1.21766 0.82085 0.81538 0.88743 1.90700 1.70310 1.39161 1.43476 1.42439 1.33004 1.26510 1.23337 1.17293 1.01829 1.00580 0.95232 1.24062 1.01299 1.02324 0.95646 1.78162 1.12734 1.01208 1.22343 1.44839 1.21016 1.14765 1.13018 1.20626 1.09317 1.03665 1.14995 0.84062 1.26882 1.02386 0.96475 0.95940 1.70409 1.37462 1.19119 1.18322 0.84590 0.75218 0.79315 0.77167 1.19210 1.20299 1.16389 1.22023 1.01564 1.04270 0.94770 1.21326 0.94010 0.98325 1.03113 1.21172 1.00457 0.92079 1.06878 0.93582 0.91873 0.85713 0.82462 0.82512 0.88211 0.87580 0.91449 0.92444 0.87747 0.87099 0.74227 0.82292 0.91459 0.79208 0.85809 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.33 -8.81 10.50 -93.27 -0.98 -9.79 16 3 C 0.08 2.29 6.69 22.49 0.15 2.44 16 4 C -0.12 -3.18 9.98 22.36 0.22 -2.96 16 5 C -0.12 -3.13 9.98 22.35 0.22 -2.91 16 6 C 0.09 2.82 5.55 22.49 0.12 2.94 16 7 O -0.30 -8.57 9.63 -74.36 -0.72 -9.28 16 8 C 0.11 2.55 0.96 -11.54 -0.01 2.54 16 9 C -0.19 -3.39 8.10 71.98 0.58 -2.81 16 10 C -0.13 -2.23 8.70 71.98 0.63 -1.61 16 11 C 0.47 15.97 4.56 87.66 0.40 16.37 16 12 O -0.56 -24.76 11.01 15.94 0.18 -24.59 16 13 N -0.61 -19.61 5.22 -303.93 -1.59 -21.19 16 14 C -0.04 -1.93 6.90 37.73 0.26 -1.67 16 15 C -0.06 -3.17 10.85 85.42 0.93 -2.25 16 16 N -0.31 -18.90 10.44 -56.47 -0.59 -19.49 16 17 N -0.17 -9.18 3.74 -190.02 -0.71 -9.89 16 18 C -0.36 -18.58 10.23 84.01 0.86 -17.72 16 19 H 0.14 6.36 7.84 -2.91 -0.02 6.34 16 20 C -0.01 -0.27 5.49 84.95 0.47 0.20 16 21 N -0.83 -47.80 11.86 21.66 0.26 -47.54 16 22 Si 1.02 38.30 29.56 68.60 2.03 40.33 16 23 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.28 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.24 -8.09 7.11 99.48 0.71 -7.39 16 26 C -0.08 -3.39 11.49 83.38 0.96 -2.44 16 27 C -0.15 -4.87 5.59 22.36 0.12 -4.74 16 28 C -0.19 -5.83 9.03 22.35 0.20 -5.63 16 29 H 0.05 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.06 1.13 7.66 -2.38 -0.02 1.11 16 31 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.10 1.31 7.39 -2.39 -0.02 1.29 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.47 4.70 -2.39 -0.01 1.46 16 37 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.20 7.69 -2.39 -0.02 1.18 16 40 H 0.42 9.30 7.68 -92.71 -0.71 8.59 16 41 H 0.16 9.04 5.92 -2.91 -0.02 9.02 16 42 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.19 6.50 8.06 -2.91 -0.02 6.48 16 44 H 0.12 4.18 3.75 -2.91 -0.01 4.17 16 45 H 0.13 3.77 6.29 -2.91 -0.02 3.75 16 Total: -1.00 -81.45 368.83 5.45 -76.01 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: 0.34 Total: 44.14 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 7.23 Total: -18.70 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -2.63 Total: -98.12 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.52 Total: -43.66 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -81.45 5.45 -76.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824754529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.277 kcal (2) G-P(sol) polarization free energy of solvation -81.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds