Wall clock time and date at job start Wed Apr 1 2020 02:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 C 1.50700 * 109.47195 * 119.99892 * 2 1 3 5 5 C 1.38315 * 119.88277 * 120.00036 * 4 2 1 6 6 C 1.38027 * 120.12398 * 180.02562 * 5 4 2 7 7 C 1.39323 * 119.87461 * 359.97438 * 6 5 4 8 8 C 1.48430 * 120.11861 * 179.97438 * 7 6 5 9 9 N 1.30765 * 126.41049 * 359.97438 * 8 7 6 10 10 O 1.21288 * 110.09532 * 180.02562 * 9 8 7 11 11 C 1.33668 * 110.02853 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.43885 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47446 * 270.02927 * 12 11 10 14 14 C 1.36937 * 119.99960 * 89.99824 * 13 12 11 15 15 H 1.07997 * 120.00227 * 9.92612 * 14 13 12 16 16 C 1.38814 * 119.99906 * 189.92034 * 14 13 12 17 17 N 1.31615 * 119.99870 * 24.65131 * 16 14 13 18 18 Si 1.86801 * 119.99870 * 204.64588 * 16 14 13 19 19 H 1.48492 * 109.47038 * 60.00314 * 18 16 14 20 20 H 1.48499 * 109.46839 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47347 * 300.00142 * 18 16 14 22 22 C 1.46504 * 119.99941 * 270.00102 * 13 12 11 23 23 C 1.50694 * 109.47048 * 88.38972 * 22 13 12 24 24 O 1.20829 * 120.00295 * 0.02562 * 23 22 13 25 25 O 1.34234 * 120.00327 * 179.97438 * 23 22 13 26 26 N 1.30978 * 107.12352 * 0.02562 * 11 10 9 27 27 C 1.39322 * 119.76393 * 0.25376 * 7 6 5 28 28 C 1.38025 * 119.88087 * 359.51572 * 27 7 6 29 29 H 1.09005 * 109.47307 * 299.99685 * 1 2 3 30 30 H 1.08995 * 109.47020 * 60.00187 * 1 2 3 31 31 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47161 * 239.99555 * 2 1 3 33 33 H 1.08993 * 109.47504 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46972 * 299.99972 * 3 2 1 35 35 H 1.09002 * 109.47396 * 59.99699 * 3 2 1 36 36 H 1.08004 * 119.94280 * 0.02562 * 5 4 2 37 37 H 1.07994 * 120.05970 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47403 * 30.03068 * 12 11 10 39 39 H 1.09000 * 109.47230 * 150.02759 * 12 11 10 40 40 H 0.97001 * 119.99844 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.46920 * 208.38427 * 22 13 12 42 42 H 1.09000 * 109.47277 * 328.38705 * 22 13 12 43 43 H 0.96701 * 117.00280 * 179.97438 * 25 23 22 44 44 H 1.08003 * 120.06244 * 179.71991 * 27 7 6 45 45 H 1.07993 * 119.94441 * 180.23709 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8274 -1.8347 1.1008 6 6 3.2898 -2.4895 2.2244 7 6 2.9547 -2.0156 3.4909 8 6 3.4485 -2.7159 4.7029 9 7 4.2021 -3.7843 4.7292 10 8 4.4285 -4.1064 5.8763 11 6 3.8297 -3.2572 6.7171 12 6 3.8671 -3.3124 8.2225 13 7 2.7505 -4.1261 8.7094 14 6 2.9113 -5.4747 8.8845 15 1 3.8958 -5.9140 8.8198 16 6 1.8090 -6.2771 9.1451 17 7 0.6100 -5.8930 8.7614 18 14 2.0273 -7.9021 10.0402 19 1 2.6151 -7.6535 11.3810 20 1 0.7070 -8.5643 10.1930 21 1 2.9335 -8.7805 9.2576 22 6 1.4617 -3.4971 9.0090 23 6 0.6144 -3.4698 7.7630 24 8 1.0429 -3.9291 6.7308 25 8 -0.6167 -2.9362 7.8001 26 7 3.2032 -2.3687 5.9865 27 6 2.1496 -0.8854 3.6159 28 6 1.6966 -0.2355 2.4856 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.0869 -2.2011 0.1184 37 1 3.9101 -3.3676 2.1219 38 1 4.8084 -3.7562 8.5466 39 1 3.7838 -2.3029 8.6253 40 1 -0.1603 -6.4535 8.9439 41 1 0.9501 -4.0682 9.7838 42 1 1.6272 -2.4780 9.3582 43 1 -1.1223 -2.9411 6.9758 44 1 1.8832 -0.5166 4.5953 45 1 1.0757 0.6428 2.5812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827112418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:50 Heat of formation + Delta-G solvation = 20.132151 kcal Electronic energy + Delta-G solvation = -30459.620664 eV Core-core repulsion = 26253.125263 eV Total energy + Delta-G solvation = -4206.495400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.57890 -39.56148 -38.71512 -36.16419 -35.97135 -34.53179 -34.38709 -32.53690 -31.16132 -30.92658 -29.50871 -27.93285 -27.35474 -26.47488 -24.45651 -23.48633 -22.61555 -21.90708 -21.04724 -20.22266 -19.78342 -17.34725 -17.30256 -16.96846 -16.63006 -16.19101 -15.41515 -15.31189 -15.28064 -15.04666 -14.22726 -14.16685 -13.89771 -13.77042 -13.76813 -13.55324 -13.50685 -13.22693 -12.70860 -12.59405 -12.35272 -12.12150 -11.67244 -11.54770 -11.45534 -11.40855 -11.21254 -11.05533 -10.88730 -10.86003 -10.77363 -10.71577 -10.37434 -10.24603 -10.16994 -10.03179 -9.46768 -9.29805 -8.90364 -8.71147 -8.25006 -7.49252 -6.16318 -3.47230 0.99907 1.45407 2.14550 3.07115 3.27715 3.34069 3.35326 3.74153 3.93234 3.95208 4.14861 4.21284 4.48206 4.49667 4.60362 4.70418 4.98526 5.02717 5.07208 5.09703 5.20806 5.24279 5.40121 5.45730 5.49962 5.60893 5.63723 5.75116 5.78446 5.90569 5.96770 6.01770 6.04057 6.08952 6.11764 6.22927 6.32966 6.55014 6.58696 6.69398 6.82742 6.84565 6.88663 6.99005 7.50762 7.85982 7.88381 8.74744 8.98779 9.34650 9.49777 9.80183 10.93423 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.002876 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.808634 B = 9734.893862 C =10297.331200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.122 4.122 6 C -0.087 4.087 7 C -0.003 4.003 8 C 0.201 3.799 9 N -0.395 5.395 10 O 0.074 5.926 11 C 0.194 3.806 12 C 0.220 3.780 13 N -0.542 5.542 14 C -0.272 4.272 15 H 0.091 0.909 16 C 0.010 3.990 17 N -0.893 5.893 18 Si 0.919 3.081 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.183 3.817 23 C 0.481 3.519 24 O -0.508 6.508 25 O -0.544 6.544 26 N -0.485 5.485 27 C -0.074 4.074 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.060 0.940 43 H 0.381 0.619 44 H 0.133 0.867 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 12.910 -9.745 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.072 4.072 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.005 4.005 8 C -0.069 4.069 9 N -0.105 5.105 10 O 0.017 5.983 11 C -0.030 4.030 12 C 0.088 3.912 13 N -0.261 5.261 14 C -0.400 4.400 15 H 0.109 0.891 16 C -0.190 4.190 17 N -0.536 5.536 18 Si 0.747 3.253 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.055 3.945 23 C 0.320 3.680 24 O -0.393 6.393 25 O -0.354 6.354 26 N -0.219 5.219 27 C -0.094 4.094 28 C -0.137 4.137 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.138 0.862 42 H 0.078 0.922 43 H 0.236 0.764 44 H 0.151 0.849 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.976 12.587 -10.355 16.418 hybrid contribution -0.696 -1.347 -0.391 1.566 sum 1.280 11.240 -10.745 15.603 Atomic orbital electron populations 1.21866 0.94256 1.02195 1.01903 1.20134 0.96029 0.96027 0.95308 1.21858 1.01268 0.95082 1.01909 1.19941 0.97128 0.95457 0.94696 1.20902 0.99002 0.95892 0.98193 1.21154 0.99008 0.99439 0.91091 1.17409 0.99201 0.95392 0.88495 1.23649 0.97802 0.92797 0.92619 1.74662 1.20201 1.15529 1.00138 1.85191 1.55814 1.46570 1.10736 1.31191 0.88735 0.83096 0.99931 1.20170 0.94737 0.97917 0.78348 1.44812 1.06512 1.05933 1.68794 1.19440 0.94261 0.82678 1.43605 0.89130 1.24928 0.95309 0.98860 0.99925 1.69882 0.99105 1.39519 1.45106 0.86099 0.77016 0.82104 0.80042 1.20397 1.21568 1.20646 1.20586 0.84640 0.96650 0.92646 1.24818 0.78868 0.72066 0.92204 1.90537 1.72583 1.42435 1.33765 1.84587 1.31225 1.77118 1.42465 1.71778 1.22634 1.27475 0.99975 1.21183 0.95118 0.93724 0.99400 1.20859 1.00986 1.00401 0.91461 0.92307 0.92444 0.92434 0.90499 0.92509 0.92458 0.92327 0.85796 0.85434 0.88794 0.88844 0.92698 0.86234 0.92226 0.76405 0.84917 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.00 37.16 0.33 -0.88 16 2 C -0.06 -0.51 3.09 -91.78 -0.28 -0.79 16 3 C -0.14 -1.12 9.00 37.16 0.33 -0.79 16 4 C -0.07 -0.84 4.79 -104.56 -0.50 -1.34 16 5 C -0.12 -1.56 9.66 -39.63 -0.38 -1.94 16 6 C -0.09 -1.37 9.69 -39.26 -0.38 -1.75 16 7 C 0.00 -0.06 5.88 -104.89 -0.62 -0.68 16 8 C 0.20 4.28 7.80 -156.11 -1.22 3.06 16 9 N -0.40 -8.78 11.86 30.97 0.37 -8.41 16 10 O 0.07 1.66 11.29 18.04 0.20 1.86 16 11 C 0.19 4.09 6.76 -12.99 -0.09 4.01 16 12 C 0.22 4.05 6.33 -5.20 -0.03 4.02 16 13 N -0.54 -12.13 2.10 -175.99 -0.37 -12.50 16 14 C -0.27 -6.73 9.70 -15.06 -0.15 -6.88 16 15 H 0.09 2.17 7.92 -52.49 -0.42 1.75 16 16 C 0.01 0.25 4.88 -17.43 -0.09 0.16 16 17 N -0.89 -24.13 9.08 55.49 0.50 -23.62 16 18 Si 0.92 20.45 29.62 -169.99 -5.04 15.41 16 19 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.18 4.00 5.57 -5.19 -0.03 3.97 16 23 C 0.48 11.40 6.45 36.00 0.23 11.63 16 24 O -0.51 -13.80 14.48 -18.75 -0.27 -14.08 16 25 O -0.54 -11.22 13.42 -39.27 -0.53 -11.75 16 26 N -0.48 -10.39 10.21 -9.88 -0.10 -10.49 16 27 C -0.07 -1.17 9.70 -39.26 -0.38 -1.55 16 28 C -0.12 -1.51 8.69 -39.63 -0.34 -1.86 16 29 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 36 H 0.12 1.26 7.94 -52.48 -0.42 0.85 16 37 H 0.13 2.01 7.87 -52.49 -0.41 1.60 16 38 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 39 H 0.09 1.44 7.91 -51.93 -0.41 1.02 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 41 H 0.12 2.80 6.27 -51.93 -0.33 2.47 16 42 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 43 H 0.38 6.58 9.10 45.56 0.41 6.99 16 44 H 0.13 2.13 7.88 -52.48 -0.41 1.72 16 45 H 0.12 1.29 7.08 -52.49 -0.37 0.92 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -32.68 381.80 -8.24 -40.92 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.18 Total: 8.50 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -3.59 Total: 8.39 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.40 Total: -55.02 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.59 Total: -23.96 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.68 -8.24 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827112418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.055 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds