Wall clock time and date at job start Wed Apr 1 2020 02:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 C 1.50700 * 109.47195 * 119.99892 * 2 1 3 5 5 C 1.38315 * 119.88277 * 120.00036 * 4 2 1 6 6 C 1.38027 * 120.12398 * 180.02562 * 5 4 2 7 7 C 1.39323 * 119.87461 * 359.97438 * 6 5 4 8 8 C 1.48430 * 120.11861 * 179.97438 * 7 6 5 9 9 N 1.30765 * 126.41049 * 359.97438 * 8 7 6 10 10 O 1.21288 * 110.09532 * 180.02562 * 9 8 7 11 11 C 1.33668 * 110.02853 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.43885 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.47446 * 270.02927 * 12 11 10 14 14 C 1.36937 * 119.99960 * 89.99824 * 13 12 11 15 15 H 1.07997 * 120.00227 * 9.92612 * 14 13 12 16 16 C 1.38814 * 119.99906 * 189.92034 * 14 13 12 17 17 N 1.31615 * 119.99870 * 24.65131 * 16 14 13 18 18 Si 1.86801 * 119.99870 * 204.64588 * 16 14 13 19 19 H 1.48492 * 109.47038 * 60.00314 * 18 16 14 20 20 H 1.48499 * 109.46839 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47347 * 300.00142 * 18 16 14 22 22 C 1.46504 * 119.99941 * 270.00102 * 13 12 11 23 23 C 1.50694 * 109.47048 * 88.38972 * 22 13 12 24 24 O 1.20829 * 120.00295 * 0.02562 * 23 22 13 25 25 O 1.34234 * 120.00327 * 179.97438 * 23 22 13 26 26 N 1.30978 * 107.12352 * 0.02562 * 11 10 9 27 27 C 1.39322 * 119.76393 * 0.25376 * 7 6 5 28 28 C 1.38025 * 119.88087 * 359.51572 * 27 7 6 29 29 H 1.09005 * 109.47307 * 299.99685 * 1 2 3 30 30 H 1.08995 * 109.47020 * 60.00187 * 1 2 3 31 31 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47161 * 239.99555 * 2 1 3 33 33 H 1.08993 * 109.47504 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46972 * 299.99972 * 3 2 1 35 35 H 1.09002 * 109.47396 * 59.99699 * 3 2 1 36 36 H 1.08004 * 119.94280 * 0.02562 * 5 4 2 37 37 H 1.07994 * 120.05970 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47403 * 30.03068 * 12 11 10 39 39 H 1.09000 * 109.47230 * 150.02759 * 12 11 10 40 40 H 0.97001 * 119.99844 * 180.02562 * 17 16 14 41 41 H 1.09003 * 109.46920 * 208.38427 * 22 13 12 42 42 H 1.09000 * 109.47277 * 328.38705 * 22 13 12 43 43 H 0.96701 * 117.00280 * 179.97438 * 25 23 22 44 44 H 1.08003 * 120.06244 * 179.71991 * 27 7 6 45 45 H 1.07993 * 119.94441 * 180.23709 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8274 -1.8347 1.1008 6 6 3.2898 -2.4895 2.2244 7 6 2.9547 -2.0156 3.4909 8 6 3.4485 -2.7159 4.7029 9 7 4.2021 -3.7843 4.7292 10 8 4.4285 -4.1064 5.8763 11 6 3.8297 -3.2572 6.7171 12 6 3.8671 -3.3124 8.2225 13 7 2.7505 -4.1261 8.7094 14 6 2.9113 -5.4747 8.8845 15 1 3.8958 -5.9140 8.8198 16 6 1.8090 -6.2771 9.1451 17 7 0.6100 -5.8930 8.7614 18 14 2.0273 -7.9021 10.0402 19 1 2.6151 -7.6535 11.3810 20 1 0.7070 -8.5643 10.1930 21 1 2.9335 -8.7805 9.2576 22 6 1.4617 -3.4971 9.0090 23 6 0.6144 -3.4698 7.7630 24 8 1.0429 -3.9291 6.7308 25 8 -0.6167 -2.9362 7.8001 26 7 3.2032 -2.3687 5.9865 27 6 2.1496 -0.8854 3.6159 28 6 1.6966 -0.2355 2.4856 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.0869 -2.2011 0.1184 37 1 3.9101 -3.3676 2.1219 38 1 4.8084 -3.7562 8.5466 39 1 3.7838 -2.3029 8.6253 40 1 -0.1603 -6.4535 8.9439 41 1 0.9501 -4.0682 9.7838 42 1 1.6272 -2.4780 9.3582 43 1 -1.1223 -2.9411 6.9758 44 1 1.8832 -0.5166 4.5953 45 1 1.0757 0.6428 2.5812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827112418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:49 Heat of formation + Delta-G solvation = 0.244132 kcal Electronic energy + Delta-G solvation = -30460.483073 eV Core-core repulsion = 26253.125263 eV Total energy + Delta-G solvation = -4207.357810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -46.21193 -40.62344 -40.53105 -37.86403 -37.11370 -36.25442 -35.84547 -34.19067 -32.82103 -32.07902 -30.70005 -29.60794 -28.22890 -27.95428 -25.72250 -25.06128 -24.11232 -23.16204 -22.46932 -21.82529 -20.86053 -19.05938 -18.81202 -18.73269 -18.37884 -17.37663 -17.15778 -17.01285 -16.50119 -16.16836 -15.97473 -15.54638 -15.37280 -15.21162 -14.91846 -14.77057 -14.59607 -14.30392 -13.95916 -13.69423 -13.56282 -13.38963 -13.19982 -13.02635 -12.93827 -12.67220 -12.48062 -12.39949 -12.36649 -12.17207 -12.04759 -11.98274 -11.88863 -11.82639 -11.72816 -11.52788 -11.19244 -11.01773 -10.58957 -10.01652 -9.50208 -9.31727 -8.07182 -5.38924 -0.26939 0.34373 0.58638 1.50745 1.52040 1.58307 1.62751 2.08719 2.19277 2.44387 2.67804 2.76829 2.81010 3.15292 3.24136 3.48696 3.67238 3.78327 3.96156 4.11521 4.26479 4.32667 4.36886 4.48398 4.48491 4.54986 4.61681 4.68074 4.83560 4.84466 4.90413 4.96122 5.01671 5.02496 5.10594 5.12138 5.15978 5.23391 5.31909 5.41582 5.42254 5.47895 5.60610 5.62512 5.89379 6.04918 6.16454 6.87579 7.35322 7.52342 7.72303 7.95638 9.00681 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.002876 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.808634 B = 9734.893862 C =10297.331200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.058 4.058 5 C -0.118 4.118 6 C -0.097 4.097 7 C -0.044 4.044 8 C 0.200 3.800 9 N -0.418 5.418 10 O 0.052 5.948 11 C 0.191 3.809 12 C 0.216 3.784 13 N -0.553 5.553 14 C -0.273 4.273 15 H 0.095 0.905 16 C -0.041 4.041 17 N -0.922 5.922 18 Si 0.977 3.023 19 H -0.263 1.263 20 H -0.301 1.301 21 H -0.286 1.286 22 C 0.182 3.818 23 C 0.481 3.519 24 O -0.549 6.549 25 O -0.537 6.537 26 N -0.493 5.493 27 C -0.083 4.083 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.252 0.748 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.395 0.605 44 H 0.123 0.877 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 14.885 -10.917 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.200 4.200 4 C -0.059 4.059 5 C -0.136 4.136 6 C -0.117 4.117 7 C -0.046 4.046 8 C -0.070 4.070 9 N -0.132 5.132 10 O -0.001 6.001 11 C -0.032 4.032 12 C 0.086 3.914 13 N -0.271 5.271 14 C -0.402 4.402 15 H 0.112 0.888 16 C -0.237 4.237 17 N -0.567 5.567 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.228 1.228 21 H -0.213 1.213 22 C 0.054 3.946 23 C 0.323 3.677 24 O -0.437 6.437 25 O -0.348 6.348 26 N -0.227 5.227 27 C -0.103 4.103 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.171 0.829 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.062 0.938 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.252 0.748 44 H 0.141 0.859 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.904 14.579 -11.488 18.659 hybrid contribution -0.697 -1.808 -0.178 1.946 sum 1.207 12.771 -11.666 17.339 Atomic orbital electron populations 1.21878 0.93591 1.01873 1.02906 1.20229 0.96447 0.96578 0.94035 1.21860 1.01063 0.94200 1.02892 1.20382 0.95252 0.94567 0.95709 1.21242 0.98243 0.95690 0.98429 1.21216 0.99483 0.99666 0.91382 1.17647 1.01778 0.97032 0.88169 1.24316 0.96737 0.92321 0.93669 1.74631 1.21789 1.16599 1.00198 1.85140 1.56636 1.47198 1.11100 1.31630 0.88151 0.82702 1.00761 1.20619 0.94541 0.99604 0.76648 1.44872 1.07405 1.05504 1.69353 1.19737 0.94256 0.83930 1.42239 0.88778 1.25601 0.95269 1.01741 1.01095 1.70030 0.99408 1.40376 1.46911 0.85203 0.75977 0.78785 0.79553 1.18799 1.22818 1.21280 1.20665 0.84287 0.98305 0.91379 1.25230 0.79322 0.71018 0.92150 1.90526 1.73574 1.44329 1.35304 1.84537 1.30434 1.76388 1.43418 1.71774 1.22733 1.27954 1.00268 1.21202 0.95368 0.93561 1.00159 1.21140 1.00429 1.00678 0.90823 0.92360 0.90503 0.93427 0.89094 0.92872 0.90631 0.92297 0.82856 0.86378 0.86215 0.85296 0.93809 0.87892 0.88325 0.74752 0.85913 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.00 71.98 0.65 -1.30 16 2 C -0.05 -0.78 3.09 -11.54 -0.04 -0.82 16 3 C -0.14 -1.71 9.00 71.98 0.65 -1.06 16 4 C -0.06 -1.23 4.79 -19.82 -0.09 -1.33 16 5 C -0.12 -2.82 9.66 22.24 0.21 -2.60 16 6 C -0.10 -3.09 9.69 22.48 0.22 -2.88 16 7 C -0.04 -1.64 5.88 -20.04 -0.12 -1.76 16 8 C 0.20 8.74 7.80 137.30 1.07 9.81 16 9 N -0.42 -19.29 11.86 -59.14 -0.70 -19.99 16 10 O 0.05 2.41 11.29 74.63 0.84 3.26 16 11 C 0.19 8.11 6.76 88.36 0.60 8.71 16 12 C 0.22 7.69 6.33 85.63 0.54 8.23 16 13 N -0.55 -24.36 2.10 -710.70 -1.49 -25.85 16 14 C -0.27 -13.47 9.70 84.03 0.81 -12.66 16 15 H 0.09 4.48 7.92 -2.91 -0.02 4.45 16 16 C -0.04 -2.11 4.88 84.86 0.41 -1.70 16 17 N -0.92 -50.74 9.08 21.65 0.20 -50.54 16 18 Si 0.98 42.54 29.62 68.60 2.03 44.57 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 22 C 0.18 7.83 5.57 85.63 0.48 8.30 16 23 C 0.48 22.83 6.45 71.23 0.46 23.29 16 24 O -0.55 -30.32 14.48 21.95 0.32 -30.00 16 25 O -0.54 -21.94 13.42 -51.45 -0.69 -22.63 16 26 N -0.49 -21.46 10.21 -302.51 -3.09 -24.54 16 27 C -0.08 -2.61 9.70 22.48 0.22 -2.39 16 28 C -0.11 -2.67 8.69 22.24 0.19 -2.48 16 29 H 0.06 0.79 7.38 -2.38 -0.02 0.77 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.10 7.87 -2.39 -0.02 1.08 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.06 0.71 7.38 -2.39 -0.02 0.69 16 36 H 0.15 2.69 7.94 -2.91 -0.02 2.67 16 37 H 0.12 3.87 7.87 -2.91 -0.02 3.85 16 38 H 0.12 3.60 8.03 -2.39 -0.02 3.58 16 39 H 0.13 3.63 7.91 -2.39 -0.02 3.62 16 40 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 41 H 0.10 4.82 6.27 -2.39 -0.01 4.81 16 42 H 0.10 3.40 7.91 -2.39 -0.02 3.38 16 43 H 0.40 13.54 9.10 -74.06 -0.67 12.87 16 44 H 0.12 4.01 7.88 -2.91 -0.02 3.99 16 45 H 0.15 2.71 7.08 -2.91 -0.02 2.69 16 Total: -1.00 -72.80 381.80 4.05 -68.75 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.36 Total: 29.58 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 6.27 Total: 27.39 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -5.08 Total: -120.93 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: 0.47 Total: -49.37 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.80 4.05 -68.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827112418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.998 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds