Wall clock time and date at job start Wed Apr 1 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 C 1.52998 * 109.47131 * 120.00750 * 2 1 3 5 5 C 1.52998 * 109.47290 * 175.00130 * 4 2 1 6 6 N 1.46497 * 109.47635 * 179.97438 * 5 4 2 7 7 C 1.34785 * 126.58784 * 125.28031 * 6 5 4 8 8 C 1.36671 * 106.83329 * 180.09580 * 7 6 5 9 9 C 1.47377 * 125.78184 * 179.89833 * 8 7 6 10 10 O 1.21529 * 120.00226 * 359.71889 * 9 8 7 11 11 O 1.34775 * 120.00382 * 179.71983 * 9 8 7 12 12 C 1.35903 * 117.00100 * 175.01470 * 11 9 8 13 13 C 1.38837 * 120.02202 * 255.26261 * 12 11 9 14 14 C 1.38183 * 120.08320 * 180.02562 * 13 12 11 15 15 C 1.38157 * 120.12358 * 359.74350 * 14 13 12 16 16 C 1.38903 * 120.04041 * 0.51467 * 15 14 13 17 17 O 1.35746 * 120.03797 * 179.76663 * 16 15 14 18 18 C 1.34834 * 116.99819 * 174.12666 * 17 16 15 19 19 H 1.07994 * 120.00102 * 5.05908 * 18 17 16 20 20 C 1.38657 * 119.99673 * 185.05882 * 18 17 16 21 21 N 1.31551 * 120.00342 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99511 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47327 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47056 * 120.00103 * 22 20 18 25 25 H 1.48498 * 109.47366 * 240.00000 * 22 20 18 26 26 C 1.38576 * 120.02228 * 75.29013 * 12 11 9 27 27 N 1.34435 * 108.43779 * 359.64254 * 8 7 6 28 28 N 1.28755 * 109.51630 * 0.21909 * 27 8 7 29 29 H 1.08996 * 109.46549 * 299.99999 * 1 2 3 30 30 H 1.08999 * 109.46739 * 59.99609 * 1 2 3 31 31 H 1.08994 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46854 * 240.00587 * 2 1 3 33 33 H 1.08997 * 109.46804 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47124 * 300.00191 * 3 2 1 35 35 H 1.09003 * 109.46706 * 60.00497 * 3 2 1 36 36 H 1.08995 * 109.47592 * 54.99763 * 4 2 1 37 37 H 1.09007 * 109.46673 * 294.99520 * 4 2 1 38 38 H 1.09004 * 109.47362 * 59.98822 * 5 4 2 39 39 H 1.09000 * 109.47044 * 299.99933 * 5 4 2 40 40 H 1.08001 * 126.58682 * 359.96959 * 7 6 5 41 41 H 1.08003 * 119.95777 * 0.04807 * 13 12 11 42 42 H 1.08002 * 119.94062 * 180.02562 * 14 13 12 43 43 H 1.08003 * 119.98034 * 180.27930 * 15 14 13 44 44 H 0.97006 * 120.00083 * 179.97438 * 21 20 18 45 45 H 1.07993 * 120.06532 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8312 1.1879 6 7 4.0533 -1.5214 2.3842 7 6 4.8357 -2.6185 2.4156 8 6 5.0432 -2.9190 3.7326 9 6 5.8424 -4.0470 4.2435 10 8 6.3822 -4.8102 3.4670 11 8 5.9748 -4.2320 5.5719 12 6 6.6365 -5.3480 5.9765 13 6 5.9299 -6.4257 6.4931 14 6 6.6015 -7.5608 6.9054 15 6 7.9773 -7.6291 6.7999 16 6 8.6899 -6.5519 6.2887 17 8 10.0422 -6.6173 6.1895 18 6 10.6612 -5.5897 5.5740 19 1 10.0926 -4.7270 5.2596 20 6 12.0277 -5.6405 5.3448 21 7 12.7204 -6.6911 5.7282 22 14 12.8851 -4.2171 4.4915 23 1 11.8901 -3.1644 4.1640 24 1 13.9233 -3.6534 5.3913 25 1 13.5236 -4.7015 3.2413 26 6 8.0171 -5.4109 5.8741 27 7 4.3994 -2.0082 4.4831 28 7 3.8016 -1.1641 3.7164 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 1.6055 -1.7199 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9995 0.1674 1.1419 39 1 3.8532 -1.3940 0.3001 40 1 5.2225 -3.1579 1.5637 41 1 4.8539 -6.3768 6.5726 42 1 6.0495 -8.3979 7.3065 43 1 8.4995 -8.5192 7.1186 44 1 13.6764 -6.7268 5.5675 45 1 8.5685 -4.5737 5.4725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841345696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:12 Heat of formation + Delta-G solvation = 12.102385 kcal Electronic energy + Delta-G solvation = -28584.285102 eV Core-core repulsion = 24377.441505 eV Total energy + Delta-G solvation = -4206.843597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.49690 -40.67605 -38.73286 -37.79359 -36.98269 -35.68813 -34.65292 -32.28566 -31.45472 -30.16006 -29.49143 -28.84988 -27.76122 -25.53974 -25.16271 -24.64645 -22.29060 -22.15399 -21.60045 -20.73717 -20.31441 -18.45445 -18.21219 -17.60342 -16.74324 -16.50220 -16.07747 -15.91242 -15.42552 -15.09878 -15.07018 -14.70094 -14.46125 -14.33006 -14.08428 -13.87899 -13.57754 -13.50365 -13.07619 -12.88914 -12.66505 -12.62433 -12.39501 -12.10110 -11.88539 -11.69866 -11.54975 -11.45691 -11.38906 -11.29144 -11.22408 -11.05723 -10.86602 -10.58645 -10.56181 -10.45360 -10.28165 -9.58400 -9.50215 -8.85909 -8.14902 -7.32996 -6.46301 -4.05256 0.80747 1.41674 1.58597 1.84578 2.24110 2.94422 3.03728 3.13525 3.14703 3.20356 3.79555 3.96335 3.99739 4.07783 4.25884 4.32418 4.46296 4.54120 4.57019 4.70232 4.76578 4.92020 5.01087 5.06938 5.08689 5.18920 5.22809 5.29080 5.34922 5.36486 5.48444 5.60414 5.63426 5.69510 5.76387 5.82227 6.00759 6.02383 6.18400 6.29187 6.57959 6.85775 7.01077 7.11028 7.16302 7.35202 7.55912 7.71581 7.97681 8.14702 8.99162 9.65529 10.71309 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.002214 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.537698 B =12641.721669 C =14310.218452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.155 4.155 4 C -0.130 4.130 5 C 0.118 3.882 6 N -0.360 5.360 7 C 0.102 3.898 8 C -0.079 4.079 9 C 0.548 3.452 10 O -0.479 6.479 11 O -0.275 6.275 12 C 0.119 3.881 13 C -0.207 4.207 14 C -0.066 4.066 15 C -0.184 4.184 16 C 0.163 3.837 17 O -0.171 6.171 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.041 3.959 21 N -0.860 5.860 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.227 4.227 27 N -0.179 5.179 28 N -0.061 5.061 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.210 0.790 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.270 0.730 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.701 12.694 -12.968 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.212 4.212 4 C -0.168 4.168 5 C -0.002 4.002 6 N -0.144 5.144 7 C -0.055 4.055 8 C -0.216 4.216 9 C 0.390 3.610 10 O -0.363 6.363 11 O -0.189 6.189 12 C 0.078 3.922 13 C -0.227 4.227 14 C -0.084 4.084 15 C -0.204 4.204 16 C 0.109 3.891 17 O -0.074 6.074 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.191 1.191 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.247 4.247 27 N -0.054 5.054 28 N -0.042 5.042 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.226 0.774 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.080 0.920 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.789 13.218 -12.253 28.277 hybrid contribution 0.982 0.136 -1.239 1.586 sum -20.807 13.354 -13.491 28.165 Atomic orbital electron populations 1.21826 0.94426 1.02081 1.02206 1.21064 0.96527 0.96423 0.97176 1.21961 1.01066 0.95732 1.02432 1.21992 0.92267 1.02461 1.00117 1.22256 0.96644 0.98724 0.82622 1.50598 1.34476 1.20099 1.09241 1.23362 0.93228 0.89313 0.99555 1.20250 1.10051 1.01201 0.90118 1.19682 0.77619 0.82311 0.81411 1.90947 1.43878 1.44277 1.57226 1.84631 1.69063 1.41650 1.23581 1.18235 0.89897 0.85035 0.99030 1.20531 0.99151 0.93211 1.09773 1.20489 0.93253 0.96502 0.98172 1.20343 0.93435 0.98579 1.08001 1.19109 0.85089 0.92199 0.92725 1.83998 1.12619 1.44041 1.66751 1.21372 0.91367 0.96670 1.37306 0.89089 1.25280 0.95466 0.98437 0.97179 1.70044 1.07984 1.27981 1.43454 0.85651 0.79338 0.79683 0.78820 1.19097 1.20037 1.20029 1.21224 0.92966 1.00717 1.09788 1.74825 1.04331 1.00157 1.26047 1.82035 1.20749 1.18945 0.82482 0.92362 0.92298 0.92497 0.90706 0.92473 0.92294 0.92169 0.90801 0.89754 0.87938 0.87530 0.77369 0.86610 0.85917 0.85834 0.91999 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.19 37.16 0.34 -0.21 16 2 C -0.09 -0.31 2.92 -90.62 -0.26 -0.58 16 3 C -0.15 -0.52 8.95 37.16 0.33 -0.19 16 4 C -0.13 -0.60 4.89 -26.73 -0.13 -0.74 16 5 C 0.12 0.56 6.29 -4.04 -0.03 0.53 16 6 N -0.36 -3.31 3.69 -61.05 -0.23 -3.54 16 7 C 0.10 1.06 11.27 -16.82 -0.19 0.87 16 8 C -0.08 -1.17 7.02 -83.57 -0.59 -1.75 16 9 C 0.55 9.97 7.82 34.45 0.27 10.23 16 10 O -0.48 -9.65 16.34 -19.29 -0.32 -9.97 16 11 O -0.28 -5.48 10.03 -24.90 -0.25 -5.73 16 12 C 0.12 2.53 5.19 -39.24 -0.20 2.33 16 13 C -0.21 -3.94 9.99 -39.38 -0.39 -4.33 16 14 C -0.07 -1.20 10.03 -39.63 -0.40 -1.60 16 15 C -0.18 -3.94 9.99 -39.36 -0.39 -4.33 16 16 C 0.16 4.09 6.65 -39.13 -0.26 3.83 16 17 O -0.17 -4.97 9.76 0.05 0.00 -4.97 16 18 C -0.39 -11.23 9.49 30.89 0.29 -10.94 16 19 H 0.09 2.49 5.20 -52.49 -0.27 2.22 16 20 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 21 N -0.86 -25.38 13.67 55.48 0.76 -24.62 16 22 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 C -0.23 -5.41 8.59 -39.25 -0.34 -5.75 16 27 N -0.18 -2.76 12.39 32.83 0.41 -2.35 16 28 N -0.06 -0.78 13.64 60.35 0.82 0.04 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.16 6.57 -51.93 -0.34 -0.18 16 34 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.10 0.40 6.57 -51.93 -0.34 0.06 16 39 H 0.11 0.22 8.08 -51.93 -0.42 -0.19 16 40 H 0.21 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.12 1.90 8.06 -52.48 -0.42 1.47 16 42 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 3.25 5.64 -52.49 -0.30 2.96 16 LS Contribution 391.89 15.07 5.91 5.91 Total: -1.00 -35.07 391.89 -5.84 -40.90 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.88 Total: -0.11 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.04 Total: -11.58 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 1.76 Total: -30.47 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.56 Total: -20.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.07 -5.84 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.007 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds