Wall clock time and date at job start Wed Apr 1 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47262 * 2 1 4 4 C 1.52998 * 109.47131 * 120.00750 * 2 1 3 5 5 C 1.52998 * 109.47290 * 175.00130 * 4 2 1 6 6 N 1.46497 * 109.47635 * 179.97438 * 5 4 2 7 7 C 1.34785 * 126.58784 * 125.28031 * 6 5 4 8 8 C 1.36671 * 106.83329 * 180.09580 * 7 6 5 9 9 C 1.47377 * 125.78184 * 179.89833 * 8 7 6 10 10 O 1.21529 * 120.00226 * 359.71889 * 9 8 7 11 11 O 1.34775 * 120.00382 * 179.71983 * 9 8 7 12 12 C 1.35903 * 117.00100 * 175.01470 * 11 9 8 13 13 C 1.38837 * 120.02202 * 255.26261 * 12 11 9 14 14 C 1.38183 * 120.08320 * 180.02562 * 13 12 11 15 15 C 1.38157 * 120.12358 * 359.74350 * 14 13 12 16 16 C 1.38903 * 120.04041 * 0.51467 * 15 14 13 17 17 O 1.35746 * 120.03797 * 179.76663 * 16 15 14 18 18 C 1.34834 * 116.99819 * 174.12666 * 17 16 15 19 19 H 1.07994 * 120.00102 * 5.05908 * 18 17 16 20 20 C 1.38657 * 119.99673 * 185.05882 * 18 17 16 21 21 N 1.31551 * 120.00342 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99511 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47327 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47056 * 120.00103 * 22 20 18 25 25 H 1.48498 * 109.47366 * 240.00000 * 22 20 18 26 26 C 1.38576 * 120.02228 * 75.29013 * 12 11 9 27 27 N 1.34435 * 108.43779 * 359.64254 * 8 7 6 28 28 N 1.28755 * 109.51630 * 0.21909 * 27 8 7 29 29 H 1.08996 * 109.46549 * 299.99999 * 1 2 3 30 30 H 1.08999 * 109.46739 * 59.99609 * 1 2 3 31 31 H 1.08994 * 109.46853 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46854 * 240.00587 * 2 1 3 33 33 H 1.08997 * 109.46804 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47124 * 300.00191 * 3 2 1 35 35 H 1.09003 * 109.46706 * 60.00497 * 3 2 1 36 36 H 1.08995 * 109.47592 * 54.99763 * 4 2 1 37 37 H 1.09007 * 109.46673 * 294.99520 * 4 2 1 38 38 H 1.09004 * 109.47362 * 59.98822 * 5 4 2 39 39 H 1.09000 * 109.47044 * 299.99933 * 5 4 2 40 40 H 1.08001 * 126.58682 * 359.96959 * 7 6 5 41 41 H 1.08003 * 119.95777 * 0.04807 * 13 12 11 42 42 H 1.08002 * 119.94062 * 180.02562 * 14 13 12 43 43 H 1.08003 * 119.98034 * 180.27930 * 15 14 13 44 44 H 0.97006 * 120.00083 * 179.97438 * 21 20 18 45 45 H 1.07993 * 120.06532 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8312 1.1879 6 7 4.0533 -1.5214 2.3842 7 6 4.8357 -2.6185 2.4156 8 6 5.0432 -2.9190 3.7326 9 6 5.8424 -4.0470 4.2435 10 8 6.3822 -4.8102 3.4670 11 8 5.9748 -4.2320 5.5719 12 6 6.6365 -5.3480 5.9765 13 6 5.9299 -6.4257 6.4931 14 6 6.6015 -7.5608 6.9054 15 6 7.9773 -7.6291 6.7999 16 6 8.6899 -6.5519 6.2887 17 8 10.0422 -6.6173 6.1895 18 6 10.6612 -5.5897 5.5740 19 1 10.0926 -4.7270 5.2596 20 6 12.0277 -5.6405 5.3448 21 7 12.7204 -6.6911 5.7282 22 14 12.8851 -4.2171 4.4915 23 1 11.8901 -3.1644 4.1640 24 1 13.9233 -3.6534 5.3913 25 1 13.5236 -4.7015 3.2413 26 6 8.0171 -5.4109 5.8741 27 7 4.3994 -2.0082 4.4831 28 7 3.8016 -1.1641 3.7164 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 1.6055 -1.7199 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9995 0.1674 1.1419 39 1 3.8532 -1.3940 0.3001 40 1 5.2225 -3.1579 1.5637 41 1 4.8539 -6.3768 6.5726 42 1 6.0495 -8.3979 7.3065 43 1 8.4995 -8.5192 7.1186 44 1 13.6764 -6.7268 5.5675 45 1 8.5685 -4.5737 5.4725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841345696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:11 Heat of formation + Delta-G solvation = -9.590352 kcal Electronic energy + Delta-G solvation = -28585.225769 eV Core-core repulsion = 24377.441505 eV Total energy + Delta-G solvation = -4207.784265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.46445 -42.19744 -40.52990 -38.64859 -38.16754 -37.37350 -35.34829 -34.33915 -32.48720 -31.40673 -30.73710 -30.35353 -28.02646 -27.49642 -26.17837 -25.61241 -23.74184 -23.26772 -22.95568 -21.90191 -20.87040 -20.11283 -19.67327 -19.16380 -17.88020 -17.71780 -17.29388 -17.09761 -16.87118 -16.21031 -16.11881 -15.92226 -15.75804 -15.64806 -15.30672 -14.93998 -14.79568 -14.66559 -14.46663 -14.03604 -13.73715 -13.55925 -13.19764 -13.17317 -13.02132 -12.84377 -12.78072 -12.70190 -12.56567 -12.23510 -12.16808 -12.08796 -12.05337 -11.93992 -11.70397 -11.53453 -11.48794 -11.25438 -10.86207 -10.56510 -9.82593 -9.16582 -8.52793 -6.21725 -0.12454 0.09914 0.28127 0.54344 0.92751 1.30505 1.38399 1.48674 1.61719 1.74529 2.13254 2.70877 2.96791 3.06440 3.24440 3.39348 3.63931 3.71280 3.72398 3.92302 3.98026 3.99394 4.16546 4.22779 4.27017 4.31365 4.38323 4.44999 4.52869 4.73768 4.75486 4.80430 4.88595 4.93039 4.96290 5.02696 5.04680 5.08241 5.28452 5.30538 5.32722 5.40231 5.43544 5.48331 5.49858 5.53355 5.94393 5.94860 6.52608 6.80211 6.91132 7.65998 8.69616 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.002214 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.537698 B =12641.721669 C =14310.218452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 C -0.156 4.156 4 C -0.125 4.125 5 C 0.106 3.894 6 N -0.342 5.342 7 C 0.132 3.868 8 C -0.112 4.112 9 C 0.549 3.451 10 O -0.507 6.507 11 O -0.284 6.284 12 C 0.110 3.890 13 C -0.188 4.188 14 C -0.046 4.046 15 C -0.189 4.189 16 C 0.128 3.872 17 O -0.219 6.219 18 C -0.416 4.416 19 H 0.090 0.910 20 C -0.016 4.016 21 N -0.911 5.911 22 Si 1.015 2.985 23 H -0.261 1.261 24 H -0.262 1.262 25 H -0.262 1.262 26 C -0.244 4.244 27 N -0.211 5.211 28 N -0.073 5.073 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.248 0.752 41 H 0.154 0.846 42 H 0.178 0.822 43 H 0.134 0.866 44 H 0.275 0.725 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.008 13.413 -14.952 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.213 4.213 4 C -0.164 4.164 5 C -0.012 4.012 6 N -0.125 5.125 7 C -0.027 4.027 8 C -0.249 4.249 9 C 0.394 3.606 10 O -0.392 6.392 11 O -0.198 6.198 12 C 0.069 3.931 13 C -0.207 4.207 14 C -0.064 4.064 15 C -0.208 4.208 16 C 0.077 3.923 17 O -0.125 6.125 18 C -0.492 4.492 19 H 0.107 0.893 20 C -0.214 4.214 21 N -0.549 5.549 22 Si 0.834 3.166 23 H -0.184 1.184 24 H -0.187 1.187 25 H -0.187 1.187 26 C -0.264 4.264 27 N -0.086 5.086 28 N -0.054 5.054 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.163 0.837 40 H 0.264 0.736 41 H 0.172 0.828 42 H 0.195 0.805 43 H 0.152 0.848 44 H 0.085 0.915 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.176 13.965 -14.234 31.338 hybrid contribution 1.292 -0.059 -0.650 1.448 sum -22.884 13.906 -14.884 30.636 Atomic orbital electron populations 1.21847 0.94889 1.01961 1.02082 1.21029 0.96091 0.96385 0.97001 1.21978 1.01571 0.95633 1.02150 1.21935 0.92242 1.02091 1.00092 1.22812 0.96588 0.99849 0.81904 1.50925 1.32996 1.19371 1.09211 1.23867 0.91355 0.88626 0.98823 1.20111 1.11755 1.01227 0.91801 1.20169 0.77268 0.82839 0.80365 1.90923 1.45319 1.45627 1.57343 1.84637 1.68776 1.41326 1.25052 1.18451 0.89190 0.86266 0.99194 1.21097 1.01038 0.91970 1.06594 1.21076 0.91839 0.97648 0.95793 1.20731 0.94962 0.97866 1.07236 1.19679 0.84384 0.93938 0.94262 1.83957 1.14621 1.44827 1.69100 1.21714 0.92188 0.97087 1.38248 0.89252 1.26516 0.95719 1.01553 0.97657 1.70159 1.08552 1.30480 1.45693 0.84597 0.78087 0.75934 0.77985 1.18444 1.18706 1.18651 1.21167 0.94305 1.00077 1.10878 1.74804 1.05342 1.00945 1.27480 1.81950 1.20693 1.18660 0.84106 0.93209 0.91757 0.92618 0.89070 0.91666 0.91918 0.93185 0.91218 0.91572 0.86538 0.83652 0.73617 0.82837 0.80453 0.84790 0.91530 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.19 71.98 0.66 -0.22 16 2 C -0.09 -0.36 2.92 -10.79 -0.03 -0.39 16 3 C -0.16 -0.70 8.95 71.98 0.64 -0.06 16 4 C -0.13 -0.87 4.89 30.59 0.15 -0.72 16 5 C 0.11 0.63 6.29 86.38 0.54 1.17 16 6 N -0.34 -5.39 3.69 -347.06 -1.28 -6.67 16 7 C 0.13 2.38 11.27 83.87 0.95 3.32 16 8 C -0.11 -3.20 7.02 40.79 0.29 -2.91 16 9 C 0.55 19.97 7.82 70.23 0.55 20.52 16 10 O -0.51 -20.43 16.34 19.74 0.32 -20.11 16 11 O -0.28 -11.35 10.03 -0.34 0.00 -11.35 16 12 C 0.11 4.67 5.19 22.49 0.12 4.79 16 13 C -0.19 -6.62 9.99 22.40 0.22 -6.39 16 14 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 15 C -0.19 -7.98 9.99 22.41 0.22 -7.76 16 16 C 0.13 6.70 6.65 22.56 0.15 6.85 16 17 O -0.22 -13.52 9.76 -22.74 -0.22 -13.74 16 18 C -0.42 -25.37 9.49 67.92 0.64 -24.72 16 19 H 0.09 5.24 5.20 -2.91 -0.02 5.23 16 20 C -0.02 -0.93 5.49 84.83 0.47 -0.46 16 21 N -0.91 -56.25 13.67 21.61 0.30 -55.95 16 22 Si 1.01 44.37 29.55 68.60 2.03 46.40 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 26 C -0.24 -12.14 8.59 22.49 0.19 -11.95 16 27 N -0.21 -6.41 12.39 -50.04 -0.62 -7.03 16 28 N -0.07 -1.79 13.64 37.02 0.51 -1.28 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.06 0.19 6.57 -2.39 -0.02 0.17 16 34 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.12 0.48 6.57 -2.38 -0.02 0.46 16 39 H 0.15 -0.16 8.08 -2.39 -0.02 -0.18 16 40 H 0.25 2.39 8.06 -2.91 -0.02 2.36 16 41 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.18 4.02 8.06 -2.91 -0.02 4.00 16 43 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 44 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 45 H 0.11 5.83 5.64 -2.91 -0.02 5.81 16 Total: -1.00 -83.48 391.89 8.03 -75.45 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.02 Total: 14.53 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 5.99 Total: -20.24 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.10 Total: -70.94 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: 0.10 Total: -45.20 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -83.48 8.03 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841345696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.855 kcal (2) G-P(sol) polarization free energy of solvation -83.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds