Wall clock time and date at job start Wed Apr 1 2020 03:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47263 * 59.09107 * 3 2 1 5 5 C 1.36905 * 120.00145 * 136.24291 * 4 3 2 6 6 H 1.08000 * 120.00123 * 225.85766 * 5 4 3 7 7 C 1.39026 * 120.00079 * 46.12459 * 5 4 3 8 8 N 1.31384 * 119.99885 * 358.50061 * 7 5 4 9 9 Si 1.86800 * 120.00152 * 178.49239 * 7 5 4 10 10 H 1.48506 * 109.46895 * 60.00528 * 9 7 5 11 11 H 1.48498 * 109.47260 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47178 * 300.00580 * 9 7 5 13 13 C 1.34770 * 119.99903 * 316.24057 * 4 3 2 14 14 O 1.21624 * 120.00087 * 174.07558 * 13 4 3 15 15 C 1.47496 * 120.00096 * 354.07429 * 13 4 3 16 16 C 1.40343 * 120.48710 * 168.07820 * 15 13 4 17 17 C 1.36927 * 118.47273 * 179.97438 * 16 15 13 18 18 C 1.39280 * 119.39000 * 0.02562 * 17 16 15 19 19 N 1.38966 * 119.52179 * 180.02562 * 18 17 16 20 20 C 1.34774 * 120.00049 * 185.52197 * 19 18 17 21 21 O 1.21495 * 119.99773 * 5.23612 * 20 19 18 22 22 O 1.34634 * 120.00021 * 185.24311 * 20 19 18 23 23 C 1.45198 * 116.99734 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47378 * 60.00028 * 23 22 20 25 25 C 1.53001 * 109.46647 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.47423 * 299.99931 * 23 22 20 27 27 N 1.32527 * 120.95407 * 359.97052 * 18 17 16 28 28 C 1.31668 * 121.65780 * 359.77699 * 27 18 17 29 29 H 4.40641 * 5.51412 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.47512 * 299.08763 * 3 2 1 31 31 H 1.09000 * 109.47265 * 179.09250 * 3 2 1 32 32 H 0.96996 * 119.99920 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.76370 * 359.95850 * 16 15 13 34 34 H 1.07997 * 120.30250 * 179.97438 * 17 16 15 35 35 H 0.96999 * 119.99801 * 5.51239 * 19 18 17 36 36 H 1.09002 * 109.46980 * 59.99645 * 24 23 22 37 37 H 1.08991 * 109.46999 * 179.97438 * 24 23 22 38 38 H 1.08996 * 109.47098 * 300.00192 * 24 23 22 39 39 H 1.08996 * 109.47151 * 60.00163 * 25 23 22 40 40 H 1.09006 * 109.46970 * 180.02562 * 25 23 22 41 41 H 1.09000 * 109.47490 * 299.99684 * 25 23 22 42 42 H 1.08996 * 109.46747 * 59.99996 * 26 23 22 43 43 H 1.08991 * 109.47324 * 180.02562 * 26 23 22 44 44 H 1.09001 * 109.46837 * 300.00352 * 26 23 22 45 45 H 1.08006 * 119.75046 * 180.26097 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7086 -1.1851 5 6 4.1700 -0.1895 -1.9151 6 1 4.1071 -0.1553 -2.9927 7 6 5.3048 0.2885 -1.2695 8 7 5.3714 0.2691 0.0425 9 14 6.7349 0.9580 -2.2675 10 1 6.2733 2.1107 -3.0821 11 1 7.8148 1.4009 -1.3495 12 1 7.2536 -0.1058 -3.1644 13 6 2.5651 -1.8722 -1.5566 14 8 2.8963 -2.4062 -2.5979 15 6 1.5400 -2.4979 -0.7004 16 6 0.7642 -3.5638 -1.1817 17 6 -0.1753 -4.1143 -0.3515 18 6 -0.3331 -3.6050 0.9352 19 7 -1.2853 -4.1620 1.7802 20 6 -1.5240 -3.6074 2.9851 21 8 -0.9771 -2.5674 3.2942 22 8 -2.3684 -4.2057 3.8463 23 6 -2.5774 -3.5522 5.1259 24 6 -3.1489 -2.1517 4.8960 25 6 -3.5598 -4.3734 5.9634 26 6 -1.2433 -3.4433 5.8670 27 7 0.4126 -2.5975 1.3656 28 6 1.3307 -2.0419 0.6026 29 1 -1.0499 0.0000 -0.0003 30 1 3.0096 -0.4987 0.8980 31 1 3.0089 1.0283 -0.0163 32 1 6.1632 0.6022 0.4928 33 1 0.9047 -3.9409 -2.1839 34 1 -0.7889 -4.9354 -0.6916 35 1 -1.7784 -4.9499 1.5027 36 1 -4.0993 -2.2292 4.3681 37 1 -3.3061 -1.6613 5.8566 38 1 -2.4486 -1.5670 4.2995 39 1 -3.1523 -5.3709 6.1272 40 1 -3.7172 -3.8825 6.9239 41 1 -4.5104 -4.4513 5.4357 42 1 -0.5430 -2.8586 5.2705 43 1 -1.4002 -2.9531 6.8277 44 1 -0.8361 -4.4410 6.0307 45 1 1.9240 -1.2251 0.9864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861521430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:13 Heat of formation + Delta-G solvation = 55.522768 kcal Electronic energy + Delta-G solvation = -30583.142013 eV Core-core repulsion = 26378.181265 eV Total energy + Delta-G solvation = -4204.960748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17313 -40.35758 -38.56141 -37.06163 -35.72437 -34.91421 -34.07793 -33.13796 -31.96750 -31.22427 -29.55493 -27.62806 -27.53623 -26.91868 -25.38980 -23.98843 -23.28105 -21.91696 -20.13244 -19.78585 -18.56678 -18.01541 -17.77046 -17.05101 -16.44747 -16.29401 -16.15039 -15.63457 -15.24284 -14.73574 -14.64523 -14.50750 -14.17266 -13.86184 -13.71112 -13.51896 -13.34541 -12.82404 -12.70414 -12.63042 -12.39687 -12.35300 -12.08160 -12.06043 -11.78058 -11.61229 -11.48721 -11.16833 -10.94389 -10.82412 -10.72274 -10.46638 -10.43611 -10.07097 -10.01492 -9.81580 -9.11280 -9.04209 -8.91662 -8.47175 -7.78917 -7.58358 -6.47150 -4.18492 1.18863 1.69359 1.91624 2.83973 3.16002 3.19249 3.23270 3.30402 3.35367 3.80055 3.85560 4.10944 4.51076 4.51946 4.55737 4.69381 4.71190 4.77400 4.90725 5.13349 5.15121 5.23729 5.29357 5.33149 5.42051 5.46312 5.48361 5.56617 5.64879 5.68254 5.76627 5.92889 6.11231 6.15241 6.22091 6.25329 6.35291 6.38598 6.49929 6.59944 6.71091 6.98896 7.18315 7.46302 8.04459 8.18975 8.20305 8.37350 8.49779 9.05488 9.18072 9.84307 10.63113 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019510 B = 0.002763 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.845274 B =10130.769740 C =10885.808644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.217 3.783 4 N -0.435 5.435 5 C -0.312 4.312 6 H 0.092 0.908 7 C 0.044 3.956 8 N -0.880 5.880 9 Si 0.929 3.071 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.518 3.482 14 O -0.571 6.571 15 C -0.202 4.202 16 C 0.000 4.000 17 C -0.226 4.226 18 C 0.373 3.627 19 N -0.637 5.637 20 C 0.639 3.361 21 O -0.496 6.496 22 O -0.369 6.369 23 C 0.138 3.862 24 C -0.184 4.184 25 C -0.140 4.140 26 C -0.185 4.185 27 N -0.485 5.485 28 C 0.146 3.854 29 H 0.207 0.793 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.274 0.726 33 H 0.143 0.857 34 H 0.132 0.868 35 H 0.419 0.581 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 -7.132 10.646 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.180 4.180 3 C 0.095 3.905 4 N -0.153 5.153 5 C -0.440 4.440 6 H 0.109 0.891 7 C -0.162 4.162 8 N -0.516 5.516 9 Si 0.755 3.245 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.307 3.693 14 O -0.454 6.454 15 C -0.209 4.209 16 C -0.026 4.026 17 C -0.250 4.250 18 C 0.142 3.858 19 N -0.290 5.290 20 C 0.391 3.609 21 O -0.378 6.378 22 O -0.285 6.285 23 C 0.101 3.899 24 C -0.242 4.242 25 C -0.197 4.197 26 C -0.243 4.243 27 N -0.200 5.200 28 C -0.010 4.010 29 H 0.224 0.776 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.150 0.850 35 H 0.256 0.744 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -15.939 -6.482 11.451 20.669 hybrid contribution 0.223 -0.396 -1.155 1.241 sum -15.716 -6.878 10.297 20.008 Atomic orbital electron populations 1.24682 0.95664 1.02754 0.99529 1.23674 0.95618 0.97526 1.01135 1.18989 0.79884 1.00821 0.90844 1.43184 1.30366 1.16795 1.24978 1.19359 0.93014 1.39856 0.91739 0.89058 1.25621 0.98194 0.96536 0.95818 1.69768 1.30025 1.44395 1.07461 0.85959 0.80040 0.79215 0.79261 1.19702 1.20823 1.19549 1.17925 0.83479 0.81154 0.86709 1.90609 1.65716 1.63780 1.25324 1.21255 1.01645 1.00832 0.97127 1.21097 0.90330 0.91812 0.99371 1.20871 1.05027 1.05794 0.93276 1.18243 0.88728 0.91894 0.86902 1.41922 1.40103 1.32447 1.14482 1.18117 0.79083 0.82631 0.81075 1.91045 1.50063 1.21413 1.75265 1.86271 1.61188 1.53426 1.27572 1.22076 0.96265 0.92678 0.78883 1.22521 1.02083 0.96044 1.03512 1.21858 0.98473 1.00413 0.98940 1.22530 0.97278 1.03196 1.01246 1.67765 1.06927 1.09331 1.35948 1.24911 0.91825 0.94509 0.89737 0.77583 0.88600 0.87179 0.91603 0.83921 0.84972 0.74428 0.92284 0.91105 0.89098 0.91506 0.90123 0.91556 0.88953 0.91126 0.92227 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.71 17.20 29.55 0.51 -3.21 16 2 C -0.18 -3.53 8.74 -37.12 -0.32 -3.85 16 3 C 0.22 4.75 4.17 -6.83 -0.03 4.72 16 4 N -0.43 -10.96 2.79 -128.87 -0.36 -11.32 16 5 C -0.31 -8.39 8.75 -14.99 -0.13 -8.52 16 6 H 0.09 2.54 7.79 -52.49 -0.41 2.13 16 7 C 0.04 1.11 5.27 -17.45 -0.09 1.02 16 8 N -0.88 -22.52 11.72 55.50 0.65 -21.87 16 9 Si 0.93 20.15 29.55 -169.99 -5.02 15.13 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 C 0.52 12.98 7.24 -12.49 -0.09 12.89 16 14 O -0.57 -15.87 16.42 5.26 0.09 -15.78 16 15 C -0.20 -4.21 5.00 -104.82 -0.52 -4.74 16 16 C 0.00 0.01 9.65 -39.27 -0.38 -0.37 16 17 C -0.23 -3.25 9.86 -39.67 -0.39 -3.64 16 18 C 0.37 5.88 7.40 -154.89 -1.15 4.73 16 19 N -0.64 -8.09 5.38 -15.87 -0.09 -8.18 16 20 C 0.64 9.03 8.00 54.05 0.43 9.46 16 21 O -0.50 -8.43 10.16 -19.27 -0.20 -8.62 16 22 O -0.37 -4.36 9.94 -40.31 -0.40 -4.76 16 23 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 24 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 25 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 26 C -0.19 -1.94 8.37 37.16 0.31 -1.63 16 27 N -0.49 -9.06 7.65 -12.04 -0.09 -9.15 16 28 C 0.15 2.89 6.40 -17.10 -0.11 2.79 16 29 H 0.21 3.09 7.80 -54.10 -0.42 2.67 16 30 H 0.10 2.10 6.21 -51.93 -0.32 1.78 16 31 H 0.11 2.47 7.37 -51.93 -0.38 2.09 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.14 2.40 7.77 -52.49 -0.41 1.99 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.42 3.67 8.80 -40.82 -0.36 3.31 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.21 4.18 2.48 -75.29 -0.19 4.00 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -32.20 372.68 -6.85 -39.05 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.62 Total: 11.15 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -1.43 Total: 8.75 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.11 Total: -50.52 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.51 Total: -29.17 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.20 -6.85 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861521430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.572 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds