Wall clock time and date at job start Wed Apr 1 2020 03:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47458 * 2 1 4 4 C 1.53005 * 109.47067 * 119.99563 * 2 1 3 5 5 H 1.09006 * 109.46766 * 54.14819 * 4 2 1 6 6 N 1.46897 * 109.47216 * 294.14845 * 4 2 1 7 7 C 1.46898 * 111.00258 * 104.46602 * 6 4 2 8 8 C 1.53000 * 109.47464 * 175.14930 * 7 6 4 9 9 F 1.39898 * 109.46884 * 59.99286 * 8 7 6 10 10 F 1.39892 * 109.47191 * 179.97438 * 8 7 6 11 11 F 1.39904 * 109.46915 * 299.99915 * 8 7 6 12 12 C 1.50698 * 109.47387 * 174.14225 * 4 2 1 13 13 O 1.21273 * 119.99810 * 100.86905 * 12 4 2 14 14 N 1.34778 * 120.00479 * 280.87673 * 12 4 2 15 15 C 1.39257 * 120.00261 * 185.71050 * 14 12 4 16 16 C 1.39678 * 119.57563 * 17.13117 * 15 14 12 17 17 C 1.38655 * 119.49124 * 179.75024 * 16 15 14 18 18 C 1.38347 * 118.67448 * 0.51752 * 17 16 15 19 19 C 1.40578 * 119.12777 * 359.75567 * 18 17 16 20 20 C 1.41335 * 119.78639 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00190 * 359.97199 * 20 19 18 22 22 C 1.40028 * 119.99772 * 179.97438 * 20 19 18 23 23 N 1.30743 * 119.99977 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00072 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46910 * 89.99802 * 24 22 20 26 26 H 1.48491 * 109.47546 * 210.00134 * 24 22 20 27 27 H 1.48504 * 109.47163 * 330.00418 * 24 22 20 28 28 N 1.31905 * 119.57500 * 197.40857 * 15 14 12 29 29 H 1.08996 * 109.46839 * 298.86848 * 1 2 3 30 30 H 1.08997 * 109.47113 * 58.86949 * 1 2 3 31 31 H 1.08998 * 109.47095 * 178.87244 * 1 2 3 32 32 H 1.08994 * 109.47523 * 239.99660 * 2 1 3 33 33 H 1.08996 * 109.47659 * 184.97182 * 3 2 1 34 34 H 1.09000 * 109.46836 * 304.97258 * 3 2 1 35 35 H 1.09000 * 109.47005 * 64.96716 * 3 2 1 36 36 H 1.00907 * 110.99516 * 228.41763 * 6 4 2 37 37 H 1.09004 * 109.46991 * 295.14696 * 7 6 4 38 38 H 1.09002 * 109.47358 * 55.14543 * 7 6 4 39 39 H 0.97000 * 119.99316 * 5.70126 * 14 12 4 40 40 H 1.07990 * 120.25079 * 0.02562 * 16 15 14 41 41 H 1.08004 * 120.65906 * 180.27038 * 17 16 15 42 42 H 1.07998 * 120.43378 * 179.77007 * 18 17 16 43 43 H 0.97007 * 119.99755 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5936 -1.7142 1.3033 6 7 1.6691 0.0481 2.4445 7 6 0.5454 -0.5833 3.1493 8 6 0.2670 0.1754 4.4484 9 9 -0.0554 1.5041 4.1525 10 9 -0.8034 -0.4256 5.1192 11 9 1.4053 0.1417 5.2611 12 6 3.5400 -0.8480 1.1791 13 8 4.2431 -0.0860 1.8081 14 7 4.1002 -1.8082 0.4170 15 6 5.4789 -2.0026 0.4439 16 6 6.2296 -1.4720 1.4955 17 6 7.6015 -1.6710 1.5232 18 6 8.1896 -2.3853 0.4947 19 6 7.3804 -2.8888 -0.5387 20 6 7.9665 -3.6209 -1.5960 21 1 9.0329 -3.7916 -1.6086 22 6 7.1646 -4.1250 -2.6274 23 7 5.8737 -3.9180 -2.6124 24 14 7.9393 -5.0920 -4.0253 25 1 7.9637 -6.5350 -3.6750 26 1 7.1430 -4.8966 -5.2633 27 1 9.3272 -4.6134 -4.2487 28 7 6.0598 -2.6807 -0.5270 29 1 -0.3633 0.4961 0.8999 30 1 -0.3633 0.5313 -0.8796 31 1 -0.3633 -1.0274 -0.0202 32 1 1.8934 -0.5138 -0.8899 33 1 3.1264 1.4438 -0.0891 34 1 1.6059 1.9813 -0.8421 35 1 1.7513 1.9300 0.9311 36 1 2.4609 0.1659 3.0588 37 1 -0.3415 -0.5570 2.5160 38 1 0.7967 -1.6186 3.3798 39 1 3.5430 -2.3639 -0.1501 40 1 5.7445 -0.9148 2.2832 41 1 8.1996 -1.2729 2.3297 42 1 9.2563 -2.5540 0.4859 43 1 5.3182 -4.2675 -3.3267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:05 Heat of formation + Delta-G solvation = -148.944769 kcal Electronic energy + Delta-G solvation = -30788.109204 eV Core-core repulsion = 26032.425338 eV Total energy + Delta-G solvation = -4755.683866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.27758 -47.83700 -47.70963 -40.44708 -38.27849 -36.87498 -34.52770 -33.99406 -33.30974 -30.48407 -29.94233 -28.99558 -27.12217 -26.17929 -25.30453 -23.03460 -22.18162 -21.66808 -20.53979 -19.64099 -18.77365 -18.54112 -18.32516 -17.53053 -17.06155 -16.23622 -16.12787 -15.12449 -14.92147 -14.85019 -14.66560 -14.62494 -14.41898 -14.19973 -14.14113 -13.91835 -13.89421 -13.79558 -13.68036 -13.45036 -12.97647 -12.92085 -12.40238 -12.28356 -12.22870 -12.00956 -11.81749 -11.32964 -11.31321 -11.09911 -11.02590 -10.85627 -10.71840 -10.68388 -10.16331 -9.98772 -9.31751 -9.12025 -8.89820 -8.11842 -7.77161 -7.20339 -6.48655 -4.57636 2.30654 2.44963 2.82621 3.04715 3.07886 3.12056 3.16461 3.26528 3.55594 3.61299 3.79788 3.89826 4.22329 4.62918 4.67542 4.73570 4.79867 4.87718 4.90522 5.09450 5.26720 5.56633 5.73434 5.80715 5.83879 5.96354 6.06587 6.08016 6.24188 6.29875 6.33338 6.55315 6.68547 6.71537 6.75729 6.86703 7.07101 7.38099 7.41885 7.75286 7.81190 8.04089 8.20163 8.49170 8.63388 8.88683 9.96082 10.24132 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.002669 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.441814 B =10489.048778 C =11289.685720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.142 4.142 4 C 0.079 3.921 5 H 0.084 0.916 6 N -0.659 5.659 7 C 0.008 3.992 8 C 0.455 3.545 9 F -0.172 7.172 10 F -0.184 7.184 11 F -0.182 7.182 12 C 0.504 3.496 13 O -0.509 6.509 14 N -0.639 5.639 15 C 0.354 3.646 16 C -0.315 4.315 17 C -0.049 4.049 18 C -0.287 4.287 19 C 0.278 3.722 20 C -0.433 4.433 21 H 0.085 0.915 22 C 0.071 3.929 23 N -0.722 5.722 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.262 1.262 28 N -0.505 5.505 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.366 0.634 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.408 0.592 40 H 0.133 0.867 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.580 4.108 6.282 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.200 4.200 4 C -0.034 4.034 5 H 0.102 0.898 6 N -0.296 5.296 7 C -0.123 4.123 8 C 0.401 3.599 9 F -0.154 7.154 10 F -0.166 7.166 11 F -0.164 7.164 12 C 0.289 3.711 13 O -0.383 6.383 14 N -0.283 5.283 15 C 0.120 3.880 16 C -0.340 4.340 17 C -0.074 4.074 18 C -0.310 4.310 19 C 0.152 3.848 20 C -0.465 4.465 21 H 0.104 0.896 22 C -0.154 4.154 23 N -0.344 5.344 24 Si 0.732 3.268 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.185 1.185 28 N -0.224 5.224 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.191 0.809 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.243 0.757 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.176 4.733 5.648 16.870 hybrid contribution 0.962 -1.100 0.291 1.490 sum -14.214 3.633 5.939 15.828 Atomic orbital electron populations 1.21869 0.94523 1.01369 1.02463 1.21077 0.96264 0.97710 0.94637 1.21739 1.01053 0.94817 1.02365 1.21621 0.91956 0.97145 0.92714 0.89842 1.60449 1.11357 1.48644 1.09196 1.23402 0.99939 0.97045 0.91880 1.20440 0.74099 0.78726 0.86655 1.93218 1.92540 1.36429 1.93195 1.93189 1.57300 1.83475 1.82623 1.93210 1.51064 1.96386 1.75727 1.20564 0.90192 0.80373 0.80005 1.90623 1.62213 1.41346 1.44165 1.43173 1.07194 1.34606 1.43366 1.18499 0.82788 0.95054 0.91688 1.21660 0.94510 1.14585 1.03256 1.20822 0.94196 0.95761 0.96612 1.21732 0.99260 1.10155 0.99824 1.18178 0.85925 0.89531 0.91170 1.19578 0.95194 1.28124 1.03618 0.89644 1.26039 0.94709 0.95595 0.99020 1.70108 1.04810 1.30954 1.28521 0.86324 0.80309 0.80189 0.79974 1.19438 1.20171 1.18543 1.68045 1.12133 1.20047 1.22182 0.91736 0.92303 0.93029 0.90389 0.92810 0.93216 0.90709 0.80911 0.86045 0.90294 0.75661 0.84966 0.88289 0.88185 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.50 37.16 0.32 -0.89 16 2 C -0.08 -0.83 2.73 -90.62 -0.25 -1.08 16 3 C -0.14 -1.76 8.80 37.16 0.33 -1.43 16 4 C 0.08 0.90 2.30 -68.86 -0.16 0.74 16 5 H 0.08 0.77 7.52 -51.93 -0.39 0.38 16 6 N -0.66 -7.10 4.83 -107.95 -0.52 -7.62 16 7 C 0.01 0.07 5.15 -3.82 -0.02 0.05 16 8 C 0.46 4.39 3.28 37.16 0.12 4.51 16 9 F -0.17 -1.87 17.24 2.25 0.04 -1.83 16 10 F -0.18 -1.76 17.32 2.25 0.04 -1.72 16 11 F -0.18 -2.06 16.71 2.25 0.04 -2.03 16 12 C 0.50 8.23 5.97 -10.99 -0.07 8.17 16 13 O -0.51 -9.84 12.32 5.56 0.07 -9.77 16 14 N -0.64 -11.92 5.41 -11.40 -0.06 -11.98 16 15 C 0.35 8.41 7.53 -154.99 -1.17 7.25 16 16 C -0.32 -7.45 8.86 -38.89 -0.34 -7.79 16 17 C -0.05 -1.14 10.15 -39.39 -0.40 -1.54 16 18 C -0.29 -7.08 9.83 -38.66 -0.38 -7.46 16 19 C 0.28 7.49 6.55 -85.00 -0.56 6.94 16 20 C -0.43 -11.31 9.14 -37.73 -0.34 -11.66 16 21 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 22 C 0.07 1.74 5.50 -17.34 -0.10 1.65 16 23 N -0.72 -18.19 11.46 55.55 0.64 -17.55 16 24 Si 0.91 18.02 29.56 -169.99 -5.02 13.00 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 28 N -0.51 -13.36 7.89 -10.26 -0.08 -13.44 16 29 H 0.06 0.53 6.27 -51.93 -0.33 0.20 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.81 7.50 -51.93 -0.39 0.42 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.94 7.28 -51.93 -0.38 0.56 16 36 H 0.37 4.67 6.59 -39.29 -0.26 4.41 16 37 H 0.12 0.77 6.23 -51.93 -0.32 0.45 16 38 H 0.08 0.55 7.99 -51.93 -0.42 0.14 16 39 H 0.41 6.80 8.83 -40.82 -0.36 6.44 16 40 H 0.13 3.04 5.22 -52.71 -0.28 2.77 16 41 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 42 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.27 6.16 8.29 -40.82 -0.34 5.82 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -29.75 366.60 -7.56 -37.31 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.20 Total: 12.66 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.01 Total: -2.55 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.03 Total: -50.59 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.12 Total: -5.58 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.02 Total: 13.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.75 -7.56 -37.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.637 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds