Wall clock time and date at job start Wed Apr 1 2020 03:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47458 * 2 1 4 4 C 1.53005 * 109.47067 * 119.99563 * 2 1 3 5 5 H 1.09006 * 109.46766 * 54.14819 * 4 2 1 6 6 N 1.46897 * 109.47216 * 294.14845 * 4 2 1 7 7 C 1.46898 * 111.00258 * 104.46602 * 6 4 2 8 8 C 1.53000 * 109.47464 * 175.14930 * 7 6 4 9 9 F 1.39898 * 109.46884 * 59.99286 * 8 7 6 10 10 F 1.39892 * 109.47191 * 179.97438 * 8 7 6 11 11 F 1.39904 * 109.46915 * 299.99915 * 8 7 6 12 12 C 1.50698 * 109.47387 * 174.14225 * 4 2 1 13 13 O 1.21273 * 119.99810 * 100.86905 * 12 4 2 14 14 N 1.34778 * 120.00479 * 280.87673 * 12 4 2 15 15 C 1.39257 * 120.00261 * 185.71050 * 14 12 4 16 16 C 1.39678 * 119.57563 * 17.13117 * 15 14 12 17 17 C 1.38655 * 119.49124 * 179.75024 * 16 15 14 18 18 C 1.38347 * 118.67448 * 0.51752 * 17 16 15 19 19 C 1.40578 * 119.12777 * 359.75567 * 18 17 16 20 20 C 1.41335 * 119.78639 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00190 * 359.97199 * 20 19 18 22 22 C 1.40028 * 119.99772 * 179.97438 * 20 19 18 23 23 N 1.30743 * 119.99977 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00072 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46910 * 89.99802 * 24 22 20 26 26 H 1.48491 * 109.47546 * 210.00134 * 24 22 20 27 27 H 1.48504 * 109.47163 * 330.00418 * 24 22 20 28 28 N 1.31905 * 119.57500 * 197.40857 * 15 14 12 29 29 H 1.08996 * 109.46839 * 298.86848 * 1 2 3 30 30 H 1.08997 * 109.47113 * 58.86949 * 1 2 3 31 31 H 1.08998 * 109.47095 * 178.87244 * 1 2 3 32 32 H 1.08994 * 109.47523 * 239.99660 * 2 1 3 33 33 H 1.08996 * 109.47659 * 184.97182 * 3 2 1 34 34 H 1.09000 * 109.46836 * 304.97258 * 3 2 1 35 35 H 1.09000 * 109.47005 * 64.96716 * 3 2 1 36 36 H 1.00907 * 110.99516 * 228.41763 * 6 4 2 37 37 H 1.09004 * 109.46991 * 295.14696 * 7 6 4 38 38 H 1.09002 * 109.47358 * 55.14543 * 7 6 4 39 39 H 0.97000 * 119.99316 * 5.70126 * 14 12 4 40 40 H 1.07990 * 120.25079 * 0.02562 * 16 15 14 41 41 H 1.08004 * 120.65906 * 180.27038 * 17 16 15 42 42 H 1.07998 * 120.43378 * 179.77007 * 18 17 16 43 43 H 0.97007 * 119.99755 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5936 -1.7142 1.3033 6 7 1.6691 0.0481 2.4445 7 6 0.5454 -0.5833 3.1493 8 6 0.2670 0.1754 4.4484 9 9 -0.0554 1.5041 4.1525 10 9 -0.8034 -0.4256 5.1192 11 9 1.4053 0.1417 5.2611 12 6 3.5400 -0.8480 1.1791 13 8 4.2431 -0.0860 1.8081 14 7 4.1002 -1.8082 0.4170 15 6 5.4789 -2.0026 0.4439 16 6 6.2296 -1.4720 1.4955 17 6 7.6015 -1.6710 1.5232 18 6 8.1896 -2.3853 0.4947 19 6 7.3804 -2.8888 -0.5387 20 6 7.9665 -3.6209 -1.5960 21 1 9.0329 -3.7916 -1.6086 22 6 7.1646 -4.1250 -2.6274 23 7 5.8737 -3.9180 -2.6124 24 14 7.9393 -5.0920 -4.0253 25 1 7.9637 -6.5350 -3.6750 26 1 7.1430 -4.8966 -5.2633 27 1 9.3272 -4.6134 -4.2487 28 7 6.0598 -2.6807 -0.5270 29 1 -0.3633 0.4961 0.8999 30 1 -0.3633 0.5313 -0.8796 31 1 -0.3633 -1.0274 -0.0202 32 1 1.8934 -0.5138 -0.8899 33 1 3.1264 1.4438 -0.0891 34 1 1.6059 1.9813 -0.8421 35 1 1.7513 1.9300 0.9311 36 1 2.4609 0.1659 3.0588 37 1 -0.3415 -0.5570 2.5160 38 1 0.7967 -1.6186 3.3798 39 1 3.5430 -2.3639 -0.1501 40 1 5.7445 -0.9148 2.2832 41 1 8.1996 -1.2729 2.3297 42 1 9.2563 -2.5540 0.4859 43 1 5.3182 -4.2675 -3.3267 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:04 Heat of formation + Delta-G solvation = -166.978162 kcal Electronic energy + Delta-G solvation = -30788.891191 eV Core-core repulsion = 26032.425338 eV Total energy + Delta-G solvation = -4756.465853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.06289 -48.62410 -48.51526 -41.81539 -39.89398 -38.06091 -36.09151 -35.20251 -34.76511 -32.34911 -31.40430 -30.17567 -27.96439 -27.65100 -26.73225 -23.92495 -23.56418 -23.45986 -21.91671 -20.72536 -19.65191 -19.48556 -19.35543 -19.15627 -18.33503 -17.64729 -17.27168 -16.60736 -16.36998 -16.10567 -15.90901 -15.66714 -15.48307 -15.26402 -15.09528 -15.00035 -14.81778 -14.71629 -14.68742 -14.55035 -14.42927 -14.16317 -13.83642 -13.68461 -13.23763 -13.07883 -12.90914 -12.81150 -12.64292 -12.62981 -12.57275 -12.10937 -11.87444 -11.82770 -11.65766 -11.53363 -11.06287 -10.55440 -10.00130 -9.80909 -9.66228 -9.01686 -8.31995 -6.52119 0.67860 1.07363 1.43195 1.50250 1.56066 1.64344 1.67722 1.98826 2.24110 2.58614 2.86259 2.87242 3.07519 3.38240 3.51821 3.81426 3.89693 3.94230 4.18391 4.23715 4.28737 4.31973 4.42816 4.61214 4.75709 4.85896 4.89935 4.93805 4.94676 5.05202 5.11413 5.22486 5.23397 5.42363 5.49869 5.57649 5.61343 5.63366 5.90013 5.92103 6.05002 6.24681 6.46846 6.75876 6.91234 7.12953 8.07796 8.43661 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017180 B = 0.002669 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.441814 B =10489.048778 C =11289.685720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.138 4.138 4 C 0.093 3.907 5 H 0.117 0.883 6 N -0.665 5.665 7 C 0.011 3.989 8 C 0.455 3.545 9 F -0.181 7.181 10 F -0.182 7.182 11 F -0.195 7.195 12 C 0.504 3.496 13 O -0.539 6.539 14 N -0.638 5.638 15 C 0.347 3.653 16 C -0.330 4.330 17 C -0.049 4.049 18 C -0.309 4.309 19 C 0.245 3.755 20 C -0.465 4.465 21 H 0.090 0.910 22 C 0.027 3.973 23 N -0.750 5.750 24 Si 0.987 3.013 25 H -0.262 1.262 26 H -0.267 1.267 27 H -0.259 1.259 28 N -0.531 5.531 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.016 0.984 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.355 0.645 37 H 0.148 0.852 38 H 0.098 0.902 39 H 0.417 0.583 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.389 3.300 5.670 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.096 4.096 3 C -0.195 4.195 4 C -0.020 4.020 5 H 0.135 0.865 6 N -0.301 5.301 7 C -0.120 4.120 8 C 0.401 3.599 9 F -0.163 7.163 10 F -0.164 7.164 11 F -0.177 7.177 12 C 0.292 3.708 13 O -0.416 6.416 14 N -0.283 5.283 15 C 0.112 3.888 16 C -0.354 4.354 17 C -0.074 4.074 18 C -0.332 4.332 19 C 0.119 3.881 20 C -0.496 4.496 21 H 0.108 0.892 22 C -0.195 4.195 23 N -0.371 5.371 24 Si 0.807 3.193 25 H -0.187 1.187 26 H -0.192 1.192 27 H -0.183 1.183 28 N -0.250 5.250 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.178 0.822 37 H 0.165 0.835 38 H 0.116 0.884 39 H 0.254 0.746 40 H 0.156 0.844 41 H 0.146 0.854 42 H 0.129 0.871 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.029 3.939 5.056 18.195 hybrid contribution 1.464 -0.752 0.574 1.743 sum -15.565 3.187 5.630 16.856 Atomic orbital electron populations 1.21824 0.91797 1.02918 1.02990 1.21109 0.98369 0.96166 0.93933 1.21693 0.98635 0.96463 1.02755 1.21638 0.87731 0.99130 0.93475 0.86534 1.60471 1.11490 1.49094 1.09062 1.23556 0.99784 0.97386 0.91225 1.20661 0.73706 0.78508 0.87063 1.93202 1.92577 1.37258 1.93230 1.93192 1.57146 1.83351 1.82697 1.93187 1.51846 1.96420 1.76252 1.21541 0.92311 0.78743 0.78238 1.90588 1.63679 1.42190 1.45095 1.43227 1.05364 1.35506 1.44207 1.18885 0.84928 0.94001 0.91035 1.21914 0.95013 1.14882 1.03622 1.21179 0.94499 0.94835 0.96876 1.21892 0.99836 1.11245 1.00226 1.18675 0.86831 0.90363 0.92270 1.19941 0.95840 1.29195 1.04651 0.89214 1.26919 0.95126 0.96241 1.01204 1.70171 1.06068 1.31305 1.29601 0.85136 0.79242 0.78495 0.76394 1.18715 1.19177 1.18328 1.68085 1.12259 1.21355 1.23334 0.91256 0.91791 0.90965 0.90907 0.96482 0.92015 0.90940 0.82180 0.83473 0.88378 0.74608 0.84424 0.85385 0.87076 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.50 71.98 0.61 -1.19 16 2 C -0.08 -1.49 2.73 -10.79 -0.03 -1.52 16 3 C -0.14 -3.32 8.80 71.98 0.63 -2.69 16 4 C 0.09 1.94 2.30 44.17 0.10 2.04 16 5 H 0.12 1.71 7.52 -2.38 -0.02 1.69 16 6 N -0.66 -13.10 4.83 -495.44 -2.39 -15.50 16 7 C 0.01 0.14 5.15 86.30 0.44 0.59 16 8 C 0.46 7.95 3.28 71.98 0.24 8.18 16 9 F -0.18 -3.68 17.24 44.97 0.78 -2.90 16 10 F -0.18 -3.10 17.32 44.97 0.78 -2.32 16 11 F -0.20 -4.25 16.71 44.97 0.75 -3.50 16 12 C 0.50 16.31 5.97 87.66 0.52 16.83 16 13 O -0.54 -21.13 12.32 -3.01 -0.04 -21.16 16 14 N -0.64 -23.85 5.41 -308.37 -1.67 -25.51 16 15 C 0.35 16.83 7.53 133.26 1.00 17.83 16 16 C -0.33 -15.83 8.86 22.72 0.20 -15.63 16 17 C -0.05 -2.32 10.15 22.40 0.23 -2.09 16 18 C -0.31 -15.63 9.83 22.87 0.22 -15.40 16 19 C 0.24 13.57 6.55 40.19 0.26 13.83 16 20 C -0.46 -24.79 9.14 23.47 0.21 -24.57 16 21 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 22 C 0.03 1.34 5.50 85.29 0.47 1.81 16 23 N -0.75 -38.00 11.46 21.84 0.25 -37.75 16 24 Si 0.99 36.69 29.56 68.60 2.03 38.72 16 25 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 27 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 28 N -0.53 -28.78 7.89 -186.36 -1.47 -30.25 16 29 H 0.07 0.86 6.27 -2.39 -0.01 0.85 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.02 0.51 7.50 -2.39 -0.02 0.49 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.76 7.28 -2.39 -0.02 1.75 16 36 H 0.36 8.77 6.59 -89.69 -0.59 8.18 16 37 H 0.15 1.24 6.23 -2.39 -0.01 1.23 16 38 H 0.10 1.01 7.99 -2.39 -0.02 0.99 16 39 H 0.42 13.78 8.83 -92.71 -0.82 12.96 16 40 H 0.14 6.42 5.22 -6.36 -0.03 6.39 16 41 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 42 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 43 H 0.28 12.67 8.29 -92.70 -0.77 11.90 16 Total: -1.00 -66.82 366.60 3.80 -63.02 By element: Atomic # 1 Polarization: 39.48 SS G_CDS: -0.34 Total: 39.14 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.12 Total: -1.99 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -5.28 Total: -109.00 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.04 Total: -21.16 kcal Atomic # 9 Polarization: -11.03 SS G_CDS: 2.31 Total: -8.72 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -66.82 3.80 -63.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.958 kcal (2) G-P(sol) polarization free energy of solvation -66.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds