Wall clock time and date at job start Wed Apr 1 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46725 * 2 1 4 4 H 1.09004 * 109.47138 * 306.11441 * 3 2 1 5 5 C 1.50696 * 109.46842 * 186.11811 * 3 2 1 6 6 C 1.38243 * 120.00071 * 292.03263 * 5 3 2 7 7 C 1.38231 * 119.99743 * 179.78880 * 6 5 3 8 8 C 1.38240 * 120.00313 * 0.44337 * 7 6 5 9 9 C 1.38235 * 119.99885 * 359.81186 * 8 7 6 10 10 C 1.38234 * 119.99964 * 359.97438 * 9 8 7 11 11 N 1.46499 * 109.47453 * 66.11723 * 3 2 1 12 12 C 1.47308 * 126.69034 * 64.52960 * 11 3 2 13 13 C 1.51580 * 103.59278 * 179.97438 * 12 11 3 14 14 O 1.21238 * 127.15353 * 180.02562 * 13 12 11 15 15 N 1.34769 * 105.68571 * 359.74861 * 13 12 11 16 16 C 1.46494 * 124.17877 * 180.27165 * 15 13 12 17 17 C 1.50699 * 109.47176 * 270.17685 * 16 15 13 18 18 O 1.21292 * 120.00201 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00326 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00192 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00284 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99800 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99464 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00281 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46801 * 89.99814 * 24 22 20 26 26 H 1.48492 * 109.47315 * 209.99996 * 24 22 20 27 27 H 1.48504 * 109.46822 * 329.99855 * 24 22 20 28 28 C 1.33797 * 111.64050 * 0.42931 * 15 13 12 29 29 O 1.21538 * 123.76851 * 179.80112 * 28 15 13 30 30 H 1.09004 * 109.46470 * 173.60020 * 1 2 3 31 31 H 1.08995 * 109.47214 * 293.59942 * 1 2 3 32 32 H 1.08995 * 109.47253 * 53.60397 * 1 2 3 33 33 H 1.09000 * 109.47053 * 240.00179 * 2 1 3 34 34 H 1.09002 * 109.47331 * 119.99863 * 2 1 3 35 35 H 1.07994 * 119.99786 * 0.02562 * 6 5 3 36 36 H 1.07999 * 119.99705 * 180.27317 * 7 6 5 37 37 H 1.08006 * 119.99732 * 179.83253 * 8 7 6 38 38 H 1.07997 * 119.99475 * 180.02562 * 9 8 7 39 39 H 1.07994 * 119.99778 * 180.02562 * 10 9 8 40 40 H 1.08998 * 110.60314 * 298.51031 * 12 11 3 41 41 H 1.09004 * 110.59689 * 61.30246 * 12 11 3 42 42 H 1.08998 * 109.47107 * 30.17658 * 16 15 13 43 43 H 1.09006 * 109.47339 * 150.18062 * 16 15 13 44 44 H 0.96999 * 119.99688 * 0.02562 * 19 17 16 45 45 H 0.97005 * 119.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5899 1.9870 -0.8302 5 6 3.5393 1.4453 -0.1514 6 6 4.3377 0.9583 0.8666 7 6 5.7128 0.9568 0.7259 8 6 6.2900 1.4507 -0.4291 9 6 5.4919 1.9425 -1.4449 10 6 4.1165 1.9400 -1.3060 11 7 1.6755 2.0894 1.2629 12 6 2.1516 1.7244 2.6083 13 6 1.4553 2.7198 3.5149 14 8 1.5480 2.8012 4.7210 15 7 0.7168 3.4995 2.7007 16 6 -0.1215 4.6090 3.1615 17 6 -1.5061 4.0989 3.4679 18 8 -1.7668 2.9241 3.3167 19 7 -2.4544 4.9480 3.9108 20 6 -3.7141 4.4841 4.1891 21 1 -3.9465 3.4381 4.0537 22 6 -4.6919 5.3596 4.6453 23 7 -5.8992 4.9147 4.9124 24 14 -4.2903 7.1689 4.8788 25 1 -4.5706 7.9046 3.6196 26 1 -5.1262 7.7243 5.9732 27 1 -2.8546 7.3160 5.2290 28 6 0.8411 3.1328 1.4200 29 8 0.2683 3.6842 0.5008 30 1 -0.3632 -1.0213 -0.1146 31 1 -0.3633 0.4114 0.9417 32 1 -0.3633 0.6097 -0.8272 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8869 0.5755 1.7703 36 1 6.3364 0.5722 1.5194 37 1 7.3646 1.4520 -0.5379 38 1 5.9428 2.3280 -2.3473 39 1 3.4930 2.3238 -2.0998 40 1 1.8543 0.7057 2.8571 41 1 3.2341 1.8337 2.6747 42 1 0.3132 5.0433 4.0617 43 1 -0.1786 5.3692 2.3823 44 1 -2.2458 5.8875 4.0321 45 1 -6.5819 5.5261 5.2305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925366988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:41 Heat of formation + Delta-G solvation = -34.866640 kcal Electronic energy + Delta-G solvation = -30580.272861 eV Core-core repulsion = 26371.392534 eV Total energy + Delta-G solvation = -4208.880327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31928 -39.83571 -38.46566 -38.29344 -36.59158 -35.58836 -34.09526 -33.24163 -31.73054 -31.38773 -31.25947 -28.97424 -27.70773 -26.11220 -24.51662 -23.21579 -22.65629 -22.35801 -21.12916 -20.18471 -19.45277 -18.52783 -17.70223 -17.11383 -17.04490 -16.63811 -15.90614 -15.67544 -15.51914 -15.06213 -14.93126 -14.80829 -14.39907 -14.17933 -14.11199 -13.98063 -13.87467 -13.61162 -13.34950 -13.21754 -12.88495 -12.62881 -12.53476 -12.19073 -12.14398 -11.86082 -11.53368 -11.39875 -11.27591 -11.17620 -11.06733 -10.78287 -10.62093 -10.08138 -10.04926 -9.88161 -9.62706 -9.27062 -9.15299 -9.02999 -8.53398 -8.23587 -6.34282 -3.86150 0.91284 1.04673 1.79139 2.10727 2.92859 3.02320 3.06995 3.15067 3.19529 3.47615 3.61141 4.03077 4.08439 4.17690 4.43919 4.57182 4.63141 4.71571 4.75029 4.80344 4.88898 4.98650 5.09487 5.12929 5.14038 5.22825 5.31068 5.42735 5.47688 5.55912 5.59100 5.61725 5.67487 5.84492 5.85031 5.92464 5.94909 6.10431 6.14401 6.17148 6.31321 6.49347 6.62729 7.23365 7.47406 7.52664 8.06663 8.20477 8.52592 8.88995 9.35882 9.71143 10.78328 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002680 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.754065 B =10444.006198 C =10715.723688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.221 3.779 4 H 0.112 0.888 5 C -0.097 4.097 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.118 4.118 10 C -0.103 4.103 11 N -0.617 5.617 12 C 0.056 3.944 13 C 0.529 3.471 14 O -0.470 6.470 15 N -0.552 5.552 16 C 0.104 3.896 17 C 0.436 3.564 18 O -0.568 6.568 19 N -0.579 5.579 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.043 3.957 23 N -0.877 5.877 24 Si 0.880 3.120 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.268 1.268 28 C 0.712 3.288 29 O -0.537 6.537 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.372 0.628 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.175 -6.192 -11.064 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.119 3.881 4 H 0.130 0.870 5 C -0.098 4.098 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.137 4.137 9 C -0.136 4.136 10 C -0.122 4.122 11 N -0.356 5.356 12 C -0.070 4.070 13 C 0.316 3.684 14 O -0.339 6.339 15 N -0.296 5.296 16 C -0.021 4.021 17 C 0.220 3.780 18 O -0.451 6.451 19 N -0.218 5.218 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.160 4.160 23 N -0.516 5.516 24 Si 0.706 3.294 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.193 1.193 28 C 0.414 3.586 29 O -0.410 6.410 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.205 0.795 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.463 -6.584 -11.015 27.625 hybrid contribution 0.072 1.459 0.368 1.506 sum 24.535 -5.125 -10.647 27.232 Atomic orbital electron populations 1.21757 0.94247 1.01857 1.03213 1.21936 0.97309 0.94493 1.03000 1.19864 0.90056 0.94136 0.84058 0.87004 1.20092 0.94968 0.99594 0.95118 1.21253 0.93815 0.99622 0.98743 1.21170 0.94799 0.99762 0.97932 1.21205 0.99903 0.98623 0.93936 1.21160 0.93608 0.99735 0.99129 1.21076 0.95116 0.98639 0.97329 1.47507 1.48063 1.33690 1.06348 1.22671 1.01684 1.00815 0.81806 1.20723 0.78523 0.81505 0.87629 1.90804 1.62251 1.69444 1.11436 1.45766 1.43181 1.32386 1.08245 1.21430 0.90800 0.87518 1.02363 1.19790 0.85957 0.87447 0.84766 1.90570 1.81158 1.16565 1.56794 1.42096 1.11187 1.09116 1.59387 1.19416 0.83936 0.98415 1.41599 0.86241 1.25053 0.95138 0.98661 0.97166 1.69624 1.02442 1.35773 1.43802 0.86662 0.78676 0.84966 0.79106 1.19427 1.20042 1.19317 1.15679 0.79653 0.80564 0.82686 1.90960 1.50275 1.58043 1.41764 0.92380 0.92030 0.92280 0.90195 0.91262 0.85485 0.85847 0.86079 0.85890 0.85651 0.86150 0.85992 0.87108 0.86939 0.79456 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.74 37.16 0.36 -1.39 16 2 C -0.13 -1.13 5.32 -26.73 -0.14 -1.27 16 3 C 0.22 2.20 2.64 -69.08 -0.18 2.02 16 4 H 0.11 1.23 7.43 -51.93 -0.39 0.84 16 5 C -0.10 -0.83 4.95 -104.62 -0.52 -1.35 16 6 C -0.12 -0.88 7.95 -39.58 -0.31 -1.19 16 7 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 8 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 9 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 10 C -0.10 -0.82 9.67 -39.58 -0.38 -1.21 16 11 N -0.62 -7.63 2.42 -173.72 -0.42 -8.05 16 12 C 0.06 0.60 5.64 -4.32 -0.02 0.58 16 13 C 0.53 8.21 8.32 -10.56 -0.09 8.13 16 14 O -0.47 -8.47 17.76 5.59 0.10 -8.37 16 15 N -0.55 -9.43 2.09 -122.03 -0.26 -9.68 16 16 C 0.10 1.85 6.18 -5.20 -0.03 1.82 16 17 C 0.44 10.30 7.85 -10.98 -0.09 10.21 16 18 O -0.57 -15.71 16.01 5.55 0.09 -15.62 16 19 N -0.58 -14.12 5.09 -10.96 -0.06 -14.18 16 20 C -0.31 -8.76 10.16 -14.93 -0.15 -8.92 16 21 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 22 C 0.04 1.20 5.50 -17.46 -0.10 1.11 16 23 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 24 Si 0.88 19.48 27.74 -169.99 -4.71 14.76 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 C 0.71 11.88 8.31 -88.02 -0.73 11.15 16 29 O -0.54 -10.56 16.92 5.33 0.09 -10.47 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.55 7.62 -51.93 -0.40 0.15 16 35 H 0.13 0.80 5.37 -52.49 -0.28 0.52 16 36 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.13 0.87 7.96 -52.49 -0.42 0.45 16 40 H 0.12 1.08 7.85 -51.93 -0.41 0.68 16 41 H 0.12 0.97 5.73 -51.93 -0.30 0.67 16 42 H 0.11 1.68 8.01 -51.93 -0.42 1.27 16 43 H 0.11 1.76 7.86 -51.93 -0.41 1.36 16 44 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -37.11 380.92 -7.98 -45.09 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.75 Total: 9.71 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: -3.58 Total: 16.06 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.04 Total: -56.92 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: 0.28 Total: -34.45 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.11 -7.98 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925366988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.224 kcal (2) G-P(sol) polarization free energy of solvation -37.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds