Wall clock time and date at job start Wed Apr 1 2020 03:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46725 * 2 1 4 4 H 1.09004 * 109.47138 * 306.11441 * 3 2 1 5 5 C 1.50696 * 109.46842 * 186.11811 * 3 2 1 6 6 C 1.38243 * 120.00071 * 292.03263 * 5 3 2 7 7 C 1.38231 * 119.99743 * 179.78880 * 6 5 3 8 8 C 1.38240 * 120.00313 * 0.44337 * 7 6 5 9 9 C 1.38235 * 119.99885 * 359.81186 * 8 7 6 10 10 C 1.38234 * 119.99964 * 359.97438 * 9 8 7 11 11 N 1.46499 * 109.47453 * 66.11723 * 3 2 1 12 12 C 1.47308 * 126.69034 * 64.52960 * 11 3 2 13 13 C 1.51580 * 103.59278 * 179.97438 * 12 11 3 14 14 O 1.21238 * 127.15353 * 180.02562 * 13 12 11 15 15 N 1.34769 * 105.68571 * 359.74861 * 13 12 11 16 16 C 1.46494 * 124.17877 * 180.27165 * 15 13 12 17 17 C 1.50699 * 109.47176 * 270.17685 * 16 15 13 18 18 O 1.21292 * 120.00201 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00326 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00192 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00284 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99800 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99464 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00281 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46801 * 89.99814 * 24 22 20 26 26 H 1.48492 * 109.47315 * 209.99996 * 24 22 20 27 27 H 1.48504 * 109.46822 * 329.99855 * 24 22 20 28 28 C 1.33797 * 111.64050 * 0.42931 * 15 13 12 29 29 O 1.21538 * 123.76851 * 179.80112 * 28 15 13 30 30 H 1.09004 * 109.46470 * 173.60020 * 1 2 3 31 31 H 1.08995 * 109.47214 * 293.59942 * 1 2 3 32 32 H 1.08995 * 109.47253 * 53.60397 * 1 2 3 33 33 H 1.09000 * 109.47053 * 240.00179 * 2 1 3 34 34 H 1.09002 * 109.47331 * 119.99863 * 2 1 3 35 35 H 1.07994 * 119.99786 * 0.02562 * 6 5 3 36 36 H 1.07999 * 119.99705 * 180.27317 * 7 6 5 37 37 H 1.08006 * 119.99732 * 179.83253 * 8 7 6 38 38 H 1.07997 * 119.99475 * 180.02562 * 9 8 7 39 39 H 1.07994 * 119.99778 * 180.02562 * 10 9 8 40 40 H 1.08998 * 110.60314 * 298.51031 * 12 11 3 41 41 H 1.09004 * 110.59689 * 61.30246 * 12 11 3 42 42 H 1.08998 * 109.47107 * 30.17658 * 16 15 13 43 43 H 1.09006 * 109.47339 * 150.18062 * 16 15 13 44 44 H 0.96999 * 119.99688 * 0.02562 * 19 17 16 45 45 H 0.97005 * 119.99464 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5899 1.9870 -0.8302 5 6 3.5393 1.4453 -0.1514 6 6 4.3377 0.9583 0.8666 7 6 5.7128 0.9568 0.7259 8 6 6.2900 1.4507 -0.4291 9 6 5.4919 1.9425 -1.4449 10 6 4.1165 1.9400 -1.3060 11 7 1.6755 2.0894 1.2629 12 6 2.1516 1.7244 2.6083 13 6 1.4553 2.7198 3.5149 14 8 1.5480 2.8012 4.7210 15 7 0.7168 3.4995 2.7007 16 6 -0.1215 4.6090 3.1615 17 6 -1.5061 4.0989 3.4679 18 8 -1.7668 2.9241 3.3167 19 7 -2.4544 4.9480 3.9108 20 6 -3.7141 4.4841 4.1891 21 1 -3.9465 3.4381 4.0537 22 6 -4.6919 5.3596 4.6453 23 7 -5.8992 4.9147 4.9124 24 14 -4.2903 7.1689 4.8788 25 1 -4.5706 7.9046 3.6196 26 1 -5.1262 7.7243 5.9732 27 1 -2.8546 7.3160 5.2290 28 6 0.8411 3.1328 1.4200 29 8 0.2683 3.6842 0.5008 30 1 -0.3632 -1.0213 -0.1146 31 1 -0.3633 0.4114 0.9417 32 1 -0.3633 0.6097 -0.8272 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8869 0.5755 1.7703 36 1 6.3364 0.5722 1.5194 37 1 7.3646 1.4520 -0.5379 38 1 5.9428 2.3280 -2.3473 39 1 3.4930 2.3238 -2.0998 40 1 1.8543 0.7057 2.8571 41 1 3.2341 1.8337 2.6747 42 1 0.3132 5.0433 4.0617 43 1 -0.1786 5.3692 2.3823 44 1 -2.2458 5.8875 4.0321 45 1 -6.5819 5.5261 5.2305 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925366988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:40 Heat of formation + Delta-G solvation = -60.102483 kcal Electronic energy + Delta-G solvation = -30581.367169 eV Core-core repulsion = 26371.392534 eV Total energy + Delta-G solvation = -4209.974635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.51590 -40.63214 -40.10562 -39.66111 -37.60692 -36.87139 -36.10262 -34.39733 -33.83055 -32.03539 -31.81562 -30.22272 -28.93476 -27.10034 -26.38241 -24.11356 -23.49295 -23.03627 -22.33271 -21.42055 -21.06570 -20.39183 -18.79689 -18.39046 -18.10876 -17.67707 -17.40691 -16.89316 -16.64050 -16.38693 -16.04314 -15.88464 -15.66140 -15.44597 -15.28243 -15.18302 -14.99153 -14.65797 -14.59766 -14.33327 -14.20494 -13.98716 -13.52700 -13.44463 -13.33314 -12.94145 -12.81402 -12.48247 -12.39898 -12.13796 -12.04642 -12.02006 -11.95100 -11.79040 -11.60689 -11.47052 -11.27903 -10.45613 -10.34810 -10.02153 -9.77132 -9.68231 -8.47781 -6.10228 0.32067 0.52167 0.59588 0.97286 1.28000 1.32365 1.42470 1.75841 1.83724 1.97832 2.19094 2.79961 2.92576 2.97732 3.07197 3.36488 3.72980 3.89737 3.92798 3.98673 4.10540 4.13798 4.16646 4.18412 4.22883 4.31145 4.37727 4.38746 4.40801 4.64385 4.71964 4.78297 4.90099 4.98924 5.04201 5.10739 5.18175 5.34278 5.37931 5.45185 5.59531 5.67046 5.70412 5.83410 6.02952 6.12646 6.27689 6.46807 6.75448 6.95479 7.24829 7.77071 8.69348 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002680 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.754065 B =10444.006198 C =10715.723688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.219 3.781 4 H 0.096 0.904 5 C -0.106 4.106 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.121 4.121 9 C -0.125 4.125 10 C -0.116 4.116 11 N -0.604 5.604 12 C 0.065 3.935 13 C 0.521 3.479 14 O -0.499 6.499 15 N -0.563 5.563 16 C 0.111 3.889 17 C 0.433 3.567 18 O -0.617 6.617 19 N -0.578 5.578 20 C -0.332 4.332 21 H 0.055 0.945 22 C -0.011 4.011 23 N -0.928 5.928 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.271 1.271 27 H -0.229 1.229 28 C 0.702 3.298 29 O -0.578 6.578 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.393 0.607 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.059 -5.119 -11.181 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.119 3.881 4 H 0.114 0.886 5 C -0.107 4.107 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.143 4.143 10 C -0.135 4.135 11 N -0.342 5.342 12 C -0.059 4.059 13 C 0.311 3.689 14 O -0.371 6.371 15 N -0.307 5.307 16 C -0.014 4.014 17 C 0.219 3.781 18 O -0.502 6.502 19 N -0.218 5.218 20 C -0.461 4.461 21 H 0.073 0.927 22 C -0.211 4.211 23 N -0.568 5.568 24 Si 0.783 3.217 25 H -0.180 1.180 26 H -0.196 1.196 27 H -0.152 1.152 28 C 0.405 3.595 29 O -0.454 6.454 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.229 0.771 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 28.405 -5.547 -11.145 31.013 hybrid contribution -1.128 0.957 0.339 1.518 sum 27.277 -4.589 -10.806 29.696 Atomic orbital electron populations 1.21724 0.96606 1.02048 1.00474 1.21918 0.94903 0.94029 1.04957 1.20004 0.91501 0.94226 0.82410 0.88628 1.19919 0.93589 1.01138 0.96068 1.21411 0.94243 0.99512 0.98826 1.21468 0.94709 0.99236 0.98538 1.21539 1.01051 0.97714 0.93640 1.21407 0.93235 0.99591 1.00033 1.21221 0.95860 0.98948 0.97454 1.47686 1.46562 1.32092 1.07844 1.22920 1.03178 1.00332 0.79472 1.21468 0.78114 0.81691 0.87643 1.90785 1.63325 1.70271 1.12670 1.45964 1.43128 1.32686 1.08874 1.21432 0.87071 0.88218 1.04708 1.20969 0.87922 0.86753 0.82432 1.90542 1.82588 1.18951 1.58123 1.41895 1.09876 1.10246 1.59817 1.18971 0.86729 0.96243 1.44146 0.92730 1.26151 0.94197 1.05166 0.95537 1.69797 1.04005 1.38524 1.44455 0.85387 0.80735 0.76025 0.79582 1.17985 1.19551 1.15196 1.15937 0.80085 0.81378 0.82137 1.90920 1.52109 1.59668 1.42731 0.90996 0.95809 0.93650 0.87871 0.89523 0.84201 0.83750 0.84090 0.84357 0.85563 0.83662 0.82102 0.83833 0.84487 0.77130 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.74 71.98 0.70 -2.81 16 2 C -0.12 -1.92 5.32 30.60 0.16 -1.76 16 3 C 0.22 4.16 2.64 44.24 0.12 4.28 16 4 H 0.10 2.14 7.43 -2.39 -0.02 2.12 16 5 C -0.11 -1.59 4.95 -19.86 -0.10 -1.69 16 6 C -0.12 -1.43 7.95 22.27 0.18 -1.26 16 7 C -0.12 -1.21 10.05 22.27 0.22 -0.99 16 8 C -0.12 -1.22 10.05 22.27 0.22 -1.00 16 9 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 10 C -0.12 -1.67 9.67 22.27 0.22 -1.45 16 11 N -0.60 -14.37 2.42 -821.95 -1.99 -16.36 16 12 C 0.07 1.26 5.64 85.76 0.48 1.74 16 13 C 0.52 15.62 8.32 87.94 0.73 16.35 16 14 O -0.50 -17.51 17.76 -2.90 -0.05 -17.56 16 15 N -0.56 -18.98 2.09 -777.22 -1.63 -20.61 16 16 C 0.11 3.85 6.18 85.63 0.53 4.38 16 17 C 0.43 20.92 7.85 87.66 0.69 21.61 16 18 O -0.62 -35.95 16.01 -3.07 -0.05 -36.00 16 19 N -0.58 -28.51 5.09 -306.98 -1.56 -30.07 16 20 C -0.33 -20.02 10.16 84.04 0.85 -19.17 16 21 H 0.05 3.92 7.39 -2.91 -0.02 3.89 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.93 -56.64 13.96 21.67 0.30 -56.34 16 24 Si 0.96 39.35 27.74 68.60 1.90 41.25 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 26 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 27 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 28 C 0.70 23.53 8.31 179.44 1.49 25.02 16 29 O -0.58 -23.33 16.92 -3.84 -0.06 -23.40 16 30 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.02 0.71 7.96 -2.39 -0.02 0.69 16 32 H 0.04 1.15 8.13 -2.39 -0.02 1.13 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.11 7.62 -2.39 -0.02 1.10 16 35 H 0.14 1.18 5.37 -2.91 -0.02 1.16 16 36 H 0.14 0.81 8.06 -2.91 -0.02 0.78 16 37 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.13 1.67 7.96 -2.91 -0.02 1.65 16 40 H 0.15 2.20 7.85 -2.39 -0.02 2.18 16 41 H 0.16 1.94 5.73 -2.39 -0.01 1.93 16 42 H 0.14 4.03 8.01 -2.39 -0.02 4.01 16 43 H 0.14 4.09 7.86 -2.38 -0.02 4.07 16 44 H 0.39 15.91 5.76 -92.71 -0.53 15.37 16 45 H 0.28 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -88.84 380.92 4.50 -84.34 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.44 Total: 32.85 kcal Atomic # 6 Polarization: 34.69 SS G_CDS: 7.19 Total: 41.88 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -4.87 Total: -123.38 kcal Atomic # 8 Polarization: -76.79 SS G_CDS: -0.17 Total: -76.95 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.90 Total: 41.25 kcal Total: -88.84 4.50 -84.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925366988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.239 kcal (2) G-P(sol) polarization free energy of solvation -88.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds