Wall clock time and date at job start Wed Apr 1 2020 03:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09000 * 110.66494 * 337.04632 * 5 3 2 7 7 N 1.46499 * 110.85229 * 100.19447 * 5 3 2 8 8 C 1.34775 * 120.00280 * 200.14659 * 7 5 3 9 9 O 1.21689 * 119.99716 * 0.02562 * 8 7 5 10 10 C 1.46832 * 120.00098 * 180.02562 * 8 7 5 11 11 C 1.42393 * 128.41267 * 0.02562 * 10 8 7 12 12 N 1.29895 * 106.48225 * 180.02562 * 11 10 8 13 13 O 1.20728 * 112.92011 * 359.97438 * 12 11 10 14 14 C 1.34462 * 111.90743 * 359.72196 * 13 12 11 15 15 C 1.46419 * 127.24458 * 180.29784 * 14 13 12 16 16 C 1.36673 * 125.99791 * 359.88580 * 15 14 13 17 17 C 1.40437 * 106.70595 * 179.90608 * 16 15 14 18 18 C 1.35080 * 107.12014 * 0.36012 * 17 16 15 19 19 O 1.34080 * 108.78158 * 359.77265 * 18 17 16 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88458 * 66.82841 * 3 2 1 23 23 C 1.36939 * 125.64991 * 298.39848 * 22 3 2 24 24 H 1.07998 * 119.99994 * 325.75796 * 23 22 3 25 25 C 1.38811 * 120.00056 * 145.75910 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.04666 * 25 23 22 27 27 Si 1.86797 * 119.99867 * 159.04287 * 25 23 22 28 28 H 1.48501 * 109.47383 * 179.97438 * 27 25 23 29 29 H 1.48491 * 109.47485 * 300.00418 * 27 25 23 30 30 H 1.48506 * 109.47017 * 60.00277 * 27 25 23 31 31 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 32 32 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 33 33 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96999 * 119.99485 * 20.15137 * 7 5 3 37 37 H 1.07997 * 126.76078 * 359.97438 * 11 10 8 38 38 H 1.08004 * 126.64634 * 0.03562 * 16 15 14 39 39 H 1.07995 * 126.44272 * 180.12630 * 17 16 15 40 40 H 1.08002 * 125.61047 * 179.74417 * 18 17 16 41 41 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 42 42 H 1.09000 * 111.03428 * 153.39530 * 20 5 3 43 43 H 1.08995 * 110.36116 * 204.14918 * 21 20 5 44 44 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 45 45 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 4.0005 0.5125 0.2217 7 7 3.9926 1.7425 -1.4951 8 6 5.2318 1.4106 -1.9083 9 8 6.0067 0.8744 -1.1384 10 6 5.6467 1.6961 -3.2876 11 6 4.8945 2.3110 -4.3285 12 7 5.6706 2.3522 -5.3692 13 8 6.7610 1.8772 -5.1617 14 6 6.8832 1.4348 -3.8978 15 6 8.0577 0.8087 -3.2878 16 6 9.2496 0.5607 -3.9091 17 6 10.0839 -0.0443 -2.9551 18 6 9.3723 -0.1452 -1.8114 19 8 8.1514 0.3700 -2.0156 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0741 3.8096 28 1 -1.3876 2.8653 5.2793 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 -1.0155 -0.1576 32 1 -0.3633 0.3713 0.9582 33 1 -0.3634 0.6442 -0.8007 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 3.8783 2.6714 -4.2654 38 1 9.5017 0.7880 -4.9344 39 1 11.1018 -0.3712 -3.1082 40 1 9.7281 -0.5713 -0.8849 41 1 3.9053 3.5799 0.3275 42 1 4.9993 2.4659 1.2138 43 1 2.8095 3.4354 2.4706 44 1 3.2374 1.7092 2.6669 45 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087628812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:31 Heat of formation + Delta-G solvation = 69.829620 kcal Electronic energy + Delta-G solvation = -30439.821496 eV Core-core repulsion = 26235.481139 eV Total energy + Delta-G solvation = -4204.340356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.29216 -42.75496 -39.74604 -37.86940 -34.51303 -34.12401 -33.58787 -32.78268 -32.54362 -31.92990 -29.26802 -28.58991 -27.04739 -25.22929 -24.19070 -23.62581 -22.04194 -21.74665 -21.39994 -20.60514 -20.27806 -19.62433 -18.90353 -18.13480 -17.60943 -17.28302 -16.34109 -16.15044 -16.12299 -15.18886 -14.82165 -14.74301 -14.26496 -14.18964 -13.76113 -13.56824 -13.19077 -13.13894 -13.07398 -12.93460 -12.70447 -12.40408 -12.17568 -11.95675 -11.62578 -11.09930 -10.99061 -10.93620 -10.78021 -10.68472 -10.50611 -10.27998 -10.16895 -10.14658 -10.07837 -9.93997 -9.86366 -9.41492 -8.82732 -8.44482 -8.42423 -6.88144 -6.04000 -3.34995 0.08712 1.49405 1.71390 1.78021 2.34603 3.00502 3.21307 3.45953 3.47292 3.49691 3.67005 3.84682 3.95303 4.30038 4.53292 4.60395 4.61496 4.85662 4.90574 5.13717 5.29691 5.35061 5.38644 5.42669 5.45475 5.48669 5.63958 5.67977 5.91554 5.97173 6.04015 6.06640 6.14852 6.27091 6.37214 6.48551 6.57327 6.66392 6.76729 6.77384 6.90788 7.03264 7.09567 7.34709 7.53263 7.71329 7.92213 8.22915 8.49171 8.98606 9.75038 10.36978 11.19068 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002630 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.289081 B =10643.306469 C =11367.260889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.155 3.845 4 H 0.036 0.964 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.706 5.706 8 C 0.587 3.413 9 O -0.514 6.514 10 C -0.233 4.233 11 C 0.034 3.966 12 N -0.355 5.355 13 O 0.121 5.879 14 C 0.109 3.891 15 C 0.022 3.978 16 C -0.149 4.149 17 C -0.229 4.229 18 C -0.001 4.001 19 O -0.109 6.109 20 C -0.143 4.143 21 C 0.141 3.859 22 N -0.588 5.588 23 C -0.325 4.325 24 H 0.057 0.943 25 C -0.020 4.020 26 N -0.911 5.911 27 Si 1.067 2.933 28 H -0.285 1.285 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.028 0.972 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.204 0.796 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.211 0.789 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.031 0.969 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.572 -1.761 -15.935 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.048 3.952 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.112 0.888 7 N -0.357 5.357 8 C 0.372 3.628 9 O -0.390 6.390 10 C -0.240 4.240 11 C -0.145 4.145 12 N -0.059 5.059 13 O 0.057 5.943 14 C 0.044 3.956 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.248 4.248 18 C -0.072 4.072 19 O -0.001 6.001 20 C -0.183 4.183 21 C 0.015 3.985 22 N -0.314 5.314 23 C -0.453 4.453 24 H 0.075 0.925 25 C -0.224 4.224 26 N -0.550 5.550 27 Si 0.896 3.104 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.221 0.779 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.792 -1.279 -14.941 20.374 hybrid contribution 0.465 -0.426 -1.183 1.340 sum 14.257 -1.705 -16.124 21.591 Atomic orbital electron populations 1.21848 0.95598 0.98746 1.04202 1.21865 0.97096 0.97492 0.99634 1.21239 0.89470 0.92445 0.92015 0.94654 1.22131 0.95974 0.99166 0.79361 0.88766 1.45827 1.13717 1.61850 1.14257 1.16650 0.82508 0.79231 0.84436 1.90889 1.51739 1.41937 1.54421 1.21671 0.94243 1.10282 0.97815 1.25043 1.02002 0.99636 0.87867 1.73519 0.92368 1.16202 1.23784 1.84933 1.27885 1.56102 1.25334 1.21022 0.92490 0.97034 0.85083 1.18001 0.92589 1.07541 0.84824 1.22024 0.91952 1.01634 1.01283 1.21782 1.02163 1.07507 0.93300 1.24601 0.82454 0.99174 1.00954 1.84530 1.31788 1.57828 1.25979 1.23180 0.99423 0.97726 0.97952 1.21596 0.85491 0.98485 0.92911 1.44430 1.01872 1.65708 1.19413 1.19515 0.84879 1.47774 0.93148 0.92544 1.25995 1.03824 0.98780 0.93783 1.70759 1.17561 1.28535 1.38111 0.83499 0.74726 0.75895 0.76257 1.21078 1.21985 1.21858 0.95269 0.89015 0.94364 0.94401 0.92510 0.76854 0.77890 0.82359 0.82625 0.77233 0.91670 0.91529 0.93335 0.95100 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.15 37.16 0.34 -2.52 16 2 C -0.12 -2.32 5.46 -26.73 -0.15 -2.47 16 3 C 0.16 3.01 2.99 -66.95 -0.20 2.81 16 4 H 0.04 0.67 7.68 -51.93 -0.40 0.28 16 5 C 0.14 2.39 2.76 -66.09 -0.18 2.21 16 6 H 0.09 1.78 7.40 -51.93 -0.38 1.40 16 7 N -0.71 -10.01 5.20 -53.28 -0.28 -10.29 16 8 C 0.59 8.81 7.79 -12.79 -0.10 8.71 16 9 O -0.51 -9.20 13.63 -18.27 -0.25 -9.45 16 10 C -0.23 -2.96 6.37 -104.04 -0.66 -3.62 16 11 C 0.03 0.35 11.67 -16.77 -0.20 0.15 16 12 N -0.36 -4.06 11.97 30.86 0.37 -3.69 16 13 O 0.12 1.37 11.19 16.09 0.18 1.55 16 14 C 0.11 1.34 7.41 -35.50 -0.26 1.08 16 15 C 0.02 0.27 7.08 -36.86 -0.26 0.01 16 16 C -0.15 -1.38 10.86 -39.32 -0.43 -1.81 16 17 C -0.23 -1.84 10.88 -39.88 -0.43 -2.28 16 18 C 0.00 -0.01 12.08 29.61 0.36 0.35 16 19 O -0.11 -1.45 7.67 -18.80 -0.14 -1.60 16 20 C -0.14 -2.62 6.77 -24.58 -0.17 -2.79 16 21 C 0.14 3.15 5.81 -2.53 -0.01 3.14 16 22 N -0.59 -13.81 2.82 -162.57 -0.46 -14.26 16 23 C -0.32 -8.44 7.01 -15.06 -0.11 -8.55 16 24 H 0.06 1.48 7.66 -52.49 -0.40 1.08 16 25 C -0.02 -0.54 5.23 -17.43 -0.09 -0.63 16 26 N -0.91 -26.44 13.14 55.49 0.73 -25.71 16 27 Si 1.07 24.44 29.97 -169.99 -5.09 19.35 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 30 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 2.11 5.69 -51.93 -0.30 1.82 16 33 H 0.04 0.69 8.12 -51.92 -0.42 0.27 16 34 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 4.59 7.54 -40.82 -0.31 4.28 16 37 H 0.20 1.41 7.74 -52.49 -0.41 1.00 16 38 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.03 0.75 6.68 -51.93 -0.35 0.41 16 45 H 0.27 7.92 6.19 -40.82 -0.25 7.67 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -32.09 373.92 -7.68 -39.76 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.82 Total: 4.91 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.55 Total: -6.20 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.36 Total: -53.96 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.21 Total: -9.50 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.09 -7.68 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087628812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.592 kcal (2) G-P(sol) polarization free energy of solvation -32.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds