Wall clock time and date at job start Wed Apr 1 2020 03:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 H 1.09000 * 109.99916 * 305.73102 * 3 2 1 5 5 C 1.54340 * 109.99273 * 184.69906 * 3 2 1 6 6 H 1.09000 * 110.66494 * 337.04632 * 5 3 2 7 7 N 1.46499 * 110.85229 * 100.19447 * 5 3 2 8 8 C 1.34775 * 120.00280 * 200.14659 * 7 5 3 9 9 O 1.21689 * 119.99716 * 0.02562 * 8 7 5 10 10 C 1.46832 * 120.00098 * 180.02562 * 8 7 5 11 11 C 1.42393 * 128.41267 * 0.02562 * 10 8 7 12 12 N 1.29895 * 106.48225 * 180.02562 * 11 10 8 13 13 O 1.20728 * 112.92011 * 359.97438 * 12 11 10 14 14 C 1.34462 * 111.90743 * 359.72196 * 13 12 11 15 15 C 1.46419 * 127.24458 * 180.29784 * 14 13 12 16 16 C 1.36673 * 125.99791 * 359.88580 * 15 14 13 17 17 C 1.40437 * 106.70595 * 179.90608 * 16 15 14 18 18 C 1.35080 * 107.12014 * 0.36012 * 17 16 15 19 19 O 1.34080 * 108.78158 * 359.77265 * 18 17 16 20 20 C 1.55154 * 103.01909 * 218.66645 * 5 3 2 21 21 C 1.54915 * 101.58149 * 35.30574 * 20 5 3 22 22 N 1.47013 * 109.88458 * 66.82841 * 3 2 1 23 23 C 1.36939 * 125.64991 * 298.39848 * 22 3 2 24 24 H 1.07998 * 119.99994 * 325.75796 * 23 22 3 25 25 C 1.38811 * 120.00056 * 145.75910 * 23 22 3 26 26 N 1.31621 * 120.00421 * 339.04666 * 25 23 22 27 27 Si 1.86797 * 119.99867 * 159.04287 * 25 23 22 28 28 H 1.48501 * 109.47383 * 179.97438 * 27 25 23 29 29 H 1.48491 * 109.47485 * 300.00418 * 27 25 23 30 30 H 1.48506 * 109.47017 * 60.00277 * 27 25 23 31 31 H 1.09004 * 109.47139 * 171.17725 * 1 2 3 32 32 H 1.08992 * 109.47208 * 291.18083 * 1 2 3 33 33 H 1.09008 * 109.47223 * 51.18114 * 1 2 3 34 34 H 1.09008 * 109.46903 * 240.00295 * 2 1 3 35 35 H 1.08999 * 109.47326 * 120.00318 * 2 1 3 36 36 H 0.96999 * 119.99485 * 20.15137 * 7 5 3 37 37 H 1.07997 * 126.76078 * 359.97438 * 11 10 8 38 38 H 1.08004 * 126.64634 * 0.03562 * 16 15 14 39 39 H 1.07995 * 126.44272 * 180.12630 * 17 16 15 40 40 H 1.08002 * 125.61047 * 179.74417 * 18 17 16 41 41 H 1.08993 * 111.00570 * 277.22644 * 20 5 3 42 42 H 1.09000 * 111.03428 * 153.39530 * 20 5 3 43 43 H 1.08995 * 110.36116 * 204.14918 * 21 20 5 44 44 H 1.09001 * 110.46109 * 81.87990 * 21 20 5 45 45 H 0.97003 * 119.99485 * 353.68314 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9933 -0.8315 5 6 3.5787 1.4582 -0.1188 6 1 4.0005 0.5125 0.2217 7 7 3.9926 1.7425 -1.4951 8 6 5.2318 1.4106 -1.9083 9 8 6.0067 0.8744 -1.1384 10 6 5.6467 1.6961 -3.2876 11 6 4.8945 2.3110 -4.3285 12 7 5.6706 2.3522 -5.3692 13 8 6.7610 1.8772 -5.1617 14 6 6.8832 1.4348 -3.8978 15 6 8.0577 0.8087 -3.2878 16 6 9.2496 0.5607 -3.9091 17 6 10.0839 -0.0443 -2.9551 18 6 9.3723 -0.1452 -1.8114 19 8 8.1514 0.3700 -2.0156 20 6 3.9906 2.6157 0.8286 21 6 2.9392 2.4820 1.9584 22 7 1.6938 2.0952 1.2710 23 6 0.4247 2.3040 1.7413 24 1 -0.3790 2.5148 1.0514 25 6 0.1713 2.2446 3.1048 26 7 1.0006 1.6038 3.9011 27 14 -1.3467 3.0741 3.8096 28 1 -1.3876 2.8653 5.2793 29 1 -1.2966 4.5291 3.5171 30 1 -2.5632 2.4868 3.1927 31 1 -0.3634 -1.0155 -0.1576 32 1 -0.3633 0.3713 0.9582 33 1 -0.3634 0.6442 -0.8007 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.3747 2.1696 -2.1088 37 1 3.8783 2.6714 -4.2654 38 1 9.5017 0.7880 -4.9344 39 1 11.1018 -0.3712 -3.1082 40 1 9.7281 -0.5713 -0.8849 41 1 3.9053 3.5799 0.3275 42 1 4.9993 2.4659 1.2138 43 1 2.8095 3.4354 2.4706 44 1 3.2374 1.7092 2.6669 45 1 1.7378 1.0964 3.5266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087628812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:30 Heat of formation + Delta-G solvation = 50.857353 kcal Electronic energy + Delta-G solvation = -30440.644195 eV Core-core repulsion = 26235.481139 eV Total energy + Delta-G solvation = -4205.163056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.12626 -43.51525 -41.06734 -39.40871 -35.82679 -35.24434 -34.39405 -34.22401 -33.60015 -33.55683 -30.59683 -29.85101 -28.57829 -26.65380 -25.61332 -24.50531 -23.54195 -22.75309 -22.35524 -21.78114 -21.68240 -21.07972 -19.82596 -19.26370 -18.97785 -18.54579 -17.57889 -17.10395 -16.96519 -16.30645 -16.17485 -15.99522 -15.73793 -15.56602 -15.26109 -15.03600 -14.72975 -14.57130 -14.01308 -13.83605 -13.75937 -13.70151 -13.44103 -13.30195 -12.86037 -12.82290 -12.67086 -12.51456 -12.18558 -11.91451 -11.86159 -11.78690 -11.74255 -11.57152 -11.54258 -11.36629 -11.19179 -10.85955 -10.43653 -10.13819 -9.24239 -8.87548 -8.11442 -5.42014 -0.78394 0.64696 0.90384 0.99967 1.60418 1.63536 1.67282 1.84866 1.88279 2.12758 2.65715 2.70605 3.02642 3.13630 3.28782 3.40527 3.49314 3.73959 3.77643 3.86493 3.97264 4.04465 4.11687 4.14467 4.28324 4.39652 4.47216 4.57124 4.64028 4.68949 4.74486 4.88046 4.89451 4.94559 4.96546 5.00294 5.06039 5.15291 5.23409 5.32721 5.45685 5.54176 5.67318 5.90535 6.04636 6.41467 6.42979 6.86546 6.97999 7.10228 7.73857 8.38813 9.08554 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.002630 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.289081 B =10643.306469 C =11367.260889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.155 3.845 4 H 0.054 0.946 5 C 0.156 3.844 6 H 0.078 0.922 7 N -0.694 5.694 8 C 0.590 3.410 9 O -0.547 6.547 10 C -0.260 4.260 11 C 0.053 3.947 12 N -0.369 5.369 13 O 0.120 5.880 14 C 0.117 3.883 15 C -0.023 4.023 16 C -0.132 4.132 17 C -0.224 4.224 18 C -0.007 4.007 19 O -0.145 6.145 20 C -0.127 4.127 21 C 0.145 3.855 22 N -0.605 5.605 23 C -0.312 4.312 24 H 0.057 0.943 25 C -0.075 4.075 26 N -0.946 5.946 27 Si 1.112 2.888 28 H -0.298 1.298 29 H -0.280 1.280 30 H -0.273 1.273 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.413 0.587 37 H 0.238 0.762 38 H 0.183 0.817 39 H 0.188 0.812 40 H 0.238 0.762 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.025 0.975 44 H 0.004 0.996 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.141 -1.448 -18.689 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.049 3.951 4 H 0.072 0.928 5 C 0.050 3.950 6 H 0.096 0.904 7 N -0.346 5.346 8 C 0.377 3.623 9 O -0.425 6.425 10 C -0.267 4.267 11 C -0.126 4.126 12 N -0.075 5.075 13 O 0.060 5.940 14 C 0.051 3.949 15 C -0.073 4.073 16 C -0.152 4.152 17 C -0.243 4.243 18 C -0.077 4.077 19 O -0.039 6.039 20 C -0.166 4.166 21 C 0.019 3.981 22 N -0.331 5.331 23 C -0.442 4.442 24 H 0.075 0.925 25 C -0.272 4.272 26 N -0.588 5.588 27 Si 0.937 3.063 28 H -0.224 1.224 29 H -0.206 1.206 30 H -0.199 1.199 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.251 0.749 37 H 0.254 0.746 38 H 0.200 0.800 39 H 0.206 0.794 40 H 0.254 0.746 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.022 0.978 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.370 -0.956 -17.775 22.877 hybrid contribution 0.440 -0.596 -0.405 0.844 sum 14.810 -1.552 -18.180 23.500 Atomic orbital electron populations 1.21728 0.95568 1.00087 1.02381 1.21803 0.97027 0.97199 0.99632 1.21340 0.90903 0.92483 0.90393 0.92817 1.21676 0.94367 0.97964 0.80964 0.90403 1.45541 1.14047 1.61986 1.13033 1.16875 0.82030 0.78311 0.85101 1.90879 1.52646 1.43390 1.55593 1.21429 0.95303 1.12792 0.97169 1.25483 1.02841 0.97890 0.86407 1.73504 0.92618 1.17119 1.24258 1.84938 1.28054 1.56278 1.24777 1.21263 0.92579 0.95754 0.85268 1.18314 0.93745 1.10057 0.85202 1.22465 0.90892 0.99518 1.02340 1.22197 1.03268 1.06526 0.92306 1.25376 0.81497 0.98241 1.02615 1.84496 1.33678 1.58883 1.26856 1.23019 0.98121 0.98865 0.96628 1.21435 0.86597 0.96288 0.93773 1.44632 1.01481 1.66556 1.20444 1.19679 0.85803 1.45622 0.93072 0.92522 1.27200 1.05737 0.99385 0.94857 1.70874 1.18599 1.30883 1.38443 0.82894 0.72715 0.75795 0.74930 1.22405 1.20622 1.19888 0.93336 0.92962 0.92894 0.91432 0.95354 0.74935 0.74617 0.80005 0.79444 0.74584 0.90287 0.91101 0.95632 0.97848 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.15 71.98 0.66 -4.63 16 2 C -0.12 -4.39 5.46 30.59 0.17 -4.22 16 3 C 0.16 5.85 2.99 45.35 0.14 5.99 16 4 H 0.05 1.88 7.68 -2.39 -0.02 1.86 16 5 C 0.16 5.29 2.76 46.18 0.13 5.42 16 6 H 0.08 2.96 7.40 -2.39 -0.02 2.94 16 7 N -0.69 -18.39 5.20 -440.69 -2.29 -20.68 16 8 C 0.59 17.12 7.79 86.49 0.67 17.79 16 9 O -0.55 -19.62 13.63 18.13 0.25 -19.37 16 10 C -0.26 -6.24 6.37 -19.48 -0.12 -6.37 16 11 C 0.05 0.97 11.67 86.01 1.00 1.97 16 12 N -0.37 -7.71 11.97 -56.72 -0.68 -8.39 16 13 O 0.12 2.54 11.19 67.81 0.76 3.29 16 14 C 0.12 2.77 7.41 24.91 0.18 2.96 16 15 C -0.02 -0.53 7.08 24.04 0.17 -0.36 16 16 C -0.13 -2.19 10.86 22.44 0.24 -1.95 16 17 C -0.22 -3.05 10.88 22.08 0.24 -2.81 16 18 C -0.01 -0.12 12.08 67.09 0.81 0.69 16 19 O -0.15 -3.84 7.67 16.23 0.12 -3.72 16 20 C -0.13 -4.62 6.77 31.99 0.22 -4.40 16 21 C 0.14 6.71 5.81 86.86 0.50 7.22 16 22 N -0.61 -28.70 2.82 -668.25 -1.88 -30.59 16 23 C -0.31 -16.38 7.01 84.03 0.59 -15.80 16 24 H 0.06 2.95 7.66 -2.91 -0.02 2.92 16 25 C -0.07 -4.12 5.23 84.86 0.44 -3.68 16 26 N -0.95 -57.18 13.14 21.65 0.28 -56.89 16 27 Si 1.11 49.89 29.97 68.60 2.06 51.95 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 30 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.05 2.40 5.69 -2.39 -0.01 2.38 16 33 H 0.05 1.81 8.12 -2.38 -0.02 1.79 16 34 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.41 8.28 7.54 -92.71 -0.70 7.58 16 37 H 0.24 2.36 7.74 -2.91 -0.02 2.34 16 38 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.19 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.24 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.00 0.19 6.68 -2.39 -0.02 0.17 16 45 H 0.26 15.77 6.19 -92.71 -0.57 15.20 16 Total: -1.00 -72.79 373.92 5.19 -67.60 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.53 Total: 18.98 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 6.04 Total: -2.18 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -4.57 Total: -116.55 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 1.13 Total: -19.79 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.06 Total: 51.95 kcal Total: -72.79 5.19 -67.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087628812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.456 kcal (2) G-P(sol) polarization free energy of solvation -72.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds