Wall clock time and date at job start Wed Apr 1 2020 03:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46643 * 2 1 4 4 H 1.08994 * 109.99807 * 304.61609 * 3 2 1 5 5 C 1.54340 * 109.98751 * 183.58340 * 3 2 1 6 6 H 1.09002 * 110.51407 * 336.97573 * 5 3 2 7 7 N 1.46498 * 110.85067 * 100.19520 * 5 3 2 8 8 C 1.34774 * 120.00395 * 200.14331 * 7 5 3 9 9 O 1.21491 * 119.99823 * 0.02562 * 8 7 5 10 10 C 1.48344 * 120.00330 * 180.02562 * 8 7 5 11 11 C 1.41719 * 126.81326 * 180.02562 * 10 8 7 12 12 C 1.37156 * 103.79615 * 179.97438 * 11 10 8 13 13 C 1.47011 * 126.85718 * 180.02562 * 12 11 10 14 14 C 1.36342 * 125.96106 * 179.71819 * 13 12 11 15 15 C 1.40706 * 106.71557 * 179.85477 * 14 13 12 16 16 C 1.34888 * 107.08056 * 0.40888 * 15 14 13 17 17 O 1.34223 * 108.73565 * 359.74652 * 16 15 14 18 18 O 1.34582 * 106.27728 * 0.02562 * 12 11 10 19 19 N 1.20867 * 111.69870 * 359.70333 * 18 12 11 20 20 C 1.55155 * 103.01949 * 218.66416 * 5 3 2 21 21 C 1.54919 * 101.58150 * 35.30862 * 20 5 3 22 22 N 1.47019 * 109.88134 * 65.71875 * 3 2 1 23 23 C 1.36934 * 125.65134 * 298.38829 * 22 3 2 24 24 H 1.08009 * 119.99580 * 333.71688 * 23 22 3 25 25 C 1.38804 * 120.00285 * 153.71028 * 23 22 3 26 26 N 1.31621 * 120.00316 * 334.84121 * 25 23 22 27 27 Si 1.86803 * 119.99924 * 154.83885 * 25 23 22 28 28 H 1.48504 * 109.46817 * 90.00557 * 27 25 23 29 29 H 1.48499 * 109.47385 * 330.00167 * 27 25 23 30 30 H 1.48505 * 109.47293 * 210.00051 * 27 25 23 31 31 H 1.09000 * 109.47383 * 291.79134 * 1 2 3 32 32 H 1.09006 * 109.47178 * 51.79643 * 1 2 3 33 33 H 1.09003 * 109.47043 * 171.79480 * 1 2 3 34 34 H 1.09000 * 109.47428 * 239.99996 * 2 1 3 35 35 H 1.08996 * 109.47296 * 119.99555 * 2 1 3 36 36 H 0.97006 * 119.99848 * 20.15202 * 7 5 3 37 37 H 1.08002 * 128.09862 * 0.02562 * 11 10 8 38 38 H 1.07998 * 126.64248 * 359.96398 * 14 13 12 39 39 H 1.07995 * 126.45964 * 180.11674 * 15 14 13 40 40 H 1.08000 * 125.63795 * 179.78696 * 16 15 14 41 41 H 1.08999 * 111.00589 * 277.23090 * 20 5 3 42 42 H 1.09000 * 111.00554 * 153.37944 * 20 5 3 43 43 H 1.08997 * 110.36502 * 204.14890 * 21 20 5 44 44 H 1.09001 * 110.36410 * 81.82771 * 21 20 5 45 45 H 0.96996 * 119.99635 * 353.73227 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6155 1.9879 -0.8429 5 6 3.5806 1.4576 -0.0907 6 1 3.9933 0.5136 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3986 -1.8492 9 8 6.0256 0.8683 -1.0630 10 6 5.7109 1.6780 -3.2366 11 6 6.9807 1.3890 -3.7957 12 6 6.8791 1.8384 -5.0876 13 6 7.9203 1.7852 -6.1241 14 6 7.7975 2.2332 -7.4060 15 6 9.0293 1.9878 -8.0402 16 6 9.8334 1.4006 -7.1302 17 8 9.1609 1.2798 -5.9748 18 8 5.6360 2.3377 -5.2167 19 7 5.0051 2.2366 -4.1907 20 6 3.9751 2.6213 0.8566 21 6 2.9032 2.4949 1.9678 22 7 1.6705 2.1035 1.2603 23 6 0.3931 2.3152 1.7059 24 1 -0.4195 2.3937 0.9986 25 6 0.1425 2.4288 3.0664 26 7 0.9575 1.8685 3.9348 27 14 -1.3516 3.3770 3.6649 28 1 -2.5094 2.4543 3.7813 29 1 -1.6737 4.4559 2.6967 30 1 -1.0594 3.9745 4.9927 31 1 -0.3634 0.3815 0.9542 32 1 -0.3634 0.6356 -0.8076 33 1 -0.3633 -1.0172 -0.1467 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.4132 2.1561 -2.0887 37 1 7.8293 0.9232 -3.3169 38 1 6.9244 2.6898 -7.8483 39 1 9.2817 2.2210 -9.0640 40 1 10.8505 1.0810 -7.3024 41 1 3.8990 3.5822 0.3478 42 1 4.9764 2.4735 1.2611 43 1 2.7641 3.4516 2.4713 44 1 3.1894 1.7258 2.6852 45 1 1.6806 1.3010 3.6250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087677640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:27 Heat of formation + Delta-G solvation = 70.620475 kcal Electronic energy + Delta-G solvation = -29443.900453 eV Core-core repulsion = 25239.594391 eV Total energy + Delta-G solvation = -4204.306062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.43185 -43.07708 -39.87524 -37.96247 -34.49237 -34.37005 -33.84696 -33.08736 -32.58452 -31.88343 -29.27798 -28.71272 -27.12165 -25.29071 -24.11020 -23.83447 -22.53824 -21.89888 -21.74222 -20.56027 -20.33825 -19.63442 -18.93546 -18.25230 -17.41315 -17.13218 -16.96259 -16.53971 -16.17702 -15.36261 -14.89885 -14.70871 -14.37357 -14.23240 -13.84090 -13.59807 -13.48109 -13.30870 -13.17301 -12.94704 -12.91816 -12.43401 -12.23519 -12.06060 -11.68125 -11.11857 -11.01642 -10.99732 -10.82203 -10.77792 -10.55825 -10.42532 -10.38481 -10.16020 -10.13641 -10.03740 -9.86164 -9.44306 -8.90233 -8.68723 -8.40946 -6.92466 -6.06888 -3.23591 0.18345 1.00876 1.54501 1.65959 2.23692 2.81068 3.02950 3.18575 3.48393 3.52904 3.61474 3.67782 3.94367 4.36851 4.41576 4.50104 4.56277 4.78811 4.86621 5.08706 5.23946 5.26996 5.28733 5.32355 5.39278 5.40484 5.46534 5.64675 5.84568 5.90054 5.94958 5.99198 6.12909 6.23028 6.31977 6.41362 6.44833 6.55989 6.62941 6.72983 6.92111 7.00592 7.07443 7.32139 7.35355 7.61178 7.85453 8.04333 8.48080 8.99974 9.77740 10.35759 11.21028 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.001985 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.964043 B =14100.033337 C =14294.974826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.038 0.962 5 C 0.134 3.866 6 H 0.097 0.903 7 N -0.696 5.696 8 C 0.596 3.404 9 O -0.520 6.520 10 C -0.013 4.013 11 C -0.150 4.150 12 C 0.033 3.967 13 C 0.042 3.958 14 C -0.156 4.156 15 C -0.214 4.214 16 C -0.014 4.014 17 O -0.158 6.158 18 O 0.144 5.856 19 N -0.320 5.320 20 C -0.145 4.145 21 C 0.144 3.856 22 N -0.589 5.589 23 C -0.325 4.325 24 H 0.063 0.937 25 C -0.024 4.024 26 N -0.913 5.913 27 Si 1.066 2.934 28 H -0.294 1.294 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.405 0.595 37 H 0.188 0.812 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.213 0.787 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.031 0.969 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.007 -0.342 -23.558 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.056 0.944 5 C 0.030 3.970 6 H 0.115 0.885 7 N -0.346 5.346 8 C 0.379 3.621 9 O -0.394 6.394 10 C -0.171 4.171 11 C -0.172 4.172 12 C -0.030 4.030 13 C -0.009 4.009 14 C -0.176 4.176 15 C -0.233 4.233 16 C -0.082 4.082 17 O -0.053 6.053 18 O 0.065 5.935 19 N -0.019 5.019 20 C -0.184 4.184 21 C 0.018 3.982 22 N -0.315 5.315 23 C -0.453 4.453 24 H 0.081 0.919 25 C -0.227 4.227 26 N -0.552 5.552 27 Si 0.896 3.104 28 H -0.222 1.222 29 H -0.219 1.219 30 H -0.212 1.212 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.241 0.759 37 H 0.205 0.795 38 H 0.179 0.821 39 H 0.176 0.824 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.463 0.181 -21.243 25.700 hybrid contribution 1.230 -0.724 -1.787 2.287 sum 15.692 -0.543 -23.031 27.874 Atomic orbital electron populations 1.21889 0.95525 0.98919 1.04254 1.21889 0.97222 0.97449 0.99701 1.21201 0.89243 0.92523 0.92120 0.94434 1.22234 0.96040 0.99444 0.79330 0.88528 1.45945 1.13274 1.60773 1.14651 1.16795 0.82605 0.79163 0.83575 1.90815 1.53591 1.42768 1.52219 1.23462 0.93367 1.03659 0.96642 1.22744 0.98893 1.03524 0.92046 1.20451 0.86585 1.02673 0.93273 1.18030 0.84004 1.06277 0.92570 1.22023 1.00117 1.03124 0.92352 1.21842 0.93949 1.05707 1.01827 1.24381 0.98642 1.02680 0.82522 1.84072 1.21664 1.63543 1.36062 1.84935 1.19378 1.59280 1.29930 1.74202 1.18060 1.16404 0.93200 1.23215 0.99605 0.97629 0.97961 1.21558 0.85192 0.98759 0.92696 1.44506 1.01953 1.65332 1.19724 1.19607 0.83722 1.49335 0.92679 0.91888 1.25846 1.03992 1.00522 0.92325 1.70736 1.19010 1.29114 1.36385 0.83529 0.74897 0.76236 0.75784 1.22153 1.21882 1.21205 0.88905 0.94259 0.95164 0.94305 0.92457 0.75929 0.79453 0.82129 0.82448 0.77005 0.91496 0.91337 0.92974 0.95100 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.98 37.16 0.33 -2.60 16 2 C -0.12 -2.40 5.47 -26.73 -0.15 -2.55 16 3 C 0.16 3.15 3.00 -66.94 -0.20 2.95 16 4 H 0.04 0.76 7.69 -51.93 -0.40 0.36 16 5 C 0.13 2.42 2.76 -66.09 -0.18 2.24 16 6 H 0.10 1.85 7.40 -51.93 -0.38 1.47 16 7 N -0.70 -10.87 5.20 -52.81 -0.27 -11.14 16 8 C 0.60 9.42 7.85 -12.10 -0.09 9.32 16 9 O -0.52 -9.56 16.67 5.37 0.09 -9.47 16 10 C -0.01 -0.18 7.17 -82.66 -0.59 -0.77 16 11 C -0.15 -1.70 10.96 -38.65 -0.42 -2.13 16 12 C 0.03 0.34 7.30 -36.42 -0.27 0.07 16 13 C 0.04 0.36 7.17 -36.71 -0.26 0.10 16 14 C -0.16 -1.07 10.86 -39.33 -0.43 -1.50 16 15 C -0.21 -1.11 10.88 -39.84 -0.43 -1.54 16 16 C -0.01 -0.07 12.08 29.54 0.36 0.29 16 17 O -0.16 -1.28 10.67 4.57 0.05 -1.23 16 18 O 0.14 1.56 11.21 15.72 0.18 1.73 16 19 N -0.32 -4.03 11.81 33.36 0.39 -3.64 16 20 C -0.14 -2.73 6.77 -24.58 -0.17 -2.89 16 21 C 0.14 3.28 5.56 -2.52 -0.01 3.27 16 22 N -0.59 -14.15 2.92 -162.56 -0.47 -14.62 16 23 C -0.33 -8.62 7.22 -15.06 -0.11 -8.73 16 24 H 0.06 1.68 7.24 -52.48 -0.38 1.30 16 25 C -0.02 -0.66 5.17 -17.43 -0.09 -0.75 16 26 N -0.91 -26.84 13.05 55.49 0.72 -26.12 16 27 Si 1.07 24.88 29.99 -169.99 -5.10 19.78 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.09 2.15 5.52 -51.93 -0.29 1.86 16 32 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.41 5.77 8.07 -40.82 -0.33 5.44 16 37 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.16 0.43 8.06 -52.49 -0.42 0.00 16 40 H 0.21 0.19 8.06 -52.49 -0.42 -0.23 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.03 0.76 6.73 -51.93 -0.35 0.41 16 45 H 0.27 8.00 6.20 -40.82 -0.25 7.75 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -31.64 380.11 -7.23 -38.88 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.83 Total: 5.33 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.72 Total: -5.22 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.37 Total: -55.52 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.31 Total: -8.97 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.10 Total: 19.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.64 -7.23 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087677640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.499 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds