Wall clock time and date at job start Wed Apr 1 2020 03:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46643 * 2 1 4 4 H 1.08994 * 109.99807 * 304.61609 * 3 2 1 5 5 C 1.54340 * 109.98751 * 183.58340 * 3 2 1 6 6 H 1.09002 * 110.51407 * 336.97573 * 5 3 2 7 7 N 1.46498 * 110.85067 * 100.19520 * 5 3 2 8 8 C 1.34774 * 120.00395 * 200.14331 * 7 5 3 9 9 O 1.21491 * 119.99823 * 0.02562 * 8 7 5 10 10 C 1.48344 * 120.00330 * 180.02562 * 8 7 5 11 11 C 1.41719 * 126.81326 * 180.02562 * 10 8 7 12 12 C 1.37156 * 103.79615 * 179.97438 * 11 10 8 13 13 C 1.47011 * 126.85718 * 180.02562 * 12 11 10 14 14 C 1.36342 * 125.96106 * 179.71819 * 13 12 11 15 15 C 1.40706 * 106.71557 * 179.85477 * 14 13 12 16 16 C 1.34888 * 107.08056 * 0.40888 * 15 14 13 17 17 O 1.34223 * 108.73565 * 359.74652 * 16 15 14 18 18 O 1.34582 * 106.27728 * 0.02562 * 12 11 10 19 19 N 1.20867 * 111.69870 * 359.70333 * 18 12 11 20 20 C 1.55155 * 103.01949 * 218.66416 * 5 3 2 21 21 C 1.54919 * 101.58150 * 35.30862 * 20 5 3 22 22 N 1.47019 * 109.88134 * 65.71875 * 3 2 1 23 23 C 1.36934 * 125.65134 * 298.38829 * 22 3 2 24 24 H 1.08009 * 119.99580 * 333.71688 * 23 22 3 25 25 C 1.38804 * 120.00285 * 153.71028 * 23 22 3 26 26 N 1.31621 * 120.00316 * 334.84121 * 25 23 22 27 27 Si 1.86803 * 119.99924 * 154.83885 * 25 23 22 28 28 H 1.48504 * 109.46817 * 90.00557 * 27 25 23 29 29 H 1.48499 * 109.47385 * 330.00167 * 27 25 23 30 30 H 1.48505 * 109.47293 * 210.00051 * 27 25 23 31 31 H 1.09000 * 109.47383 * 291.79134 * 1 2 3 32 32 H 1.09006 * 109.47178 * 51.79643 * 1 2 3 33 33 H 1.09003 * 109.47043 * 171.79480 * 1 2 3 34 34 H 1.09000 * 109.47428 * 239.99996 * 2 1 3 35 35 H 1.08996 * 109.47296 * 119.99555 * 2 1 3 36 36 H 0.97006 * 119.99848 * 20.15202 * 7 5 3 37 37 H 1.08002 * 128.09862 * 0.02562 * 11 10 8 38 38 H 1.07998 * 126.64248 * 359.96398 * 14 13 12 39 39 H 1.07995 * 126.45964 * 180.11674 * 15 14 13 40 40 H 1.08000 * 125.63795 * 179.78696 * 16 15 14 41 41 H 1.08999 * 111.00589 * 277.23090 * 20 5 3 42 42 H 1.09000 * 111.00554 * 153.37944 * 20 5 3 43 43 H 1.08997 * 110.36502 * 204.14890 * 21 20 5 44 44 H 1.09001 * 110.36410 * 81.82771 * 21 20 5 45 45 H 0.96996 * 119.99635 * 353.73227 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6155 1.9879 -0.8429 5 6 3.5806 1.4576 -0.0907 6 1 3.9933 0.5136 0.2653 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3986 -1.8492 9 8 6.0256 0.8683 -1.0630 10 6 5.7109 1.6780 -3.2366 11 6 6.9807 1.3890 -3.7957 12 6 6.8791 1.8384 -5.0876 13 6 7.9203 1.7852 -6.1241 14 6 7.7975 2.2332 -7.4060 15 6 9.0293 1.9878 -8.0402 16 6 9.8334 1.4006 -7.1302 17 8 9.1609 1.2798 -5.9748 18 8 5.6360 2.3377 -5.2167 19 7 5.0051 2.2366 -4.1907 20 6 3.9751 2.6213 0.8566 21 6 2.9032 2.4949 1.9678 22 7 1.6705 2.1035 1.2603 23 6 0.3931 2.3152 1.7059 24 1 -0.4195 2.3937 0.9986 25 6 0.1425 2.4288 3.0664 26 7 0.9575 1.8685 3.9348 27 14 -1.3516 3.3770 3.6649 28 1 -2.5094 2.4543 3.7813 29 1 -1.6737 4.4559 2.6967 30 1 -1.0594 3.9745 4.9927 31 1 -0.3634 0.3815 0.9542 32 1 -0.3634 0.6356 -0.8076 33 1 -0.3633 -1.0172 -0.1467 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.4132 2.1561 -2.0887 37 1 7.8293 0.9232 -3.3169 38 1 6.9244 2.6898 -7.8483 39 1 9.2817 2.2210 -9.0640 40 1 10.8505 1.0810 -7.3024 41 1 3.8990 3.5822 0.3478 42 1 4.9764 2.4735 1.2611 43 1 2.7641 3.4516 2.4713 44 1 3.1894 1.7258 2.6852 45 1 1.6806 1.3010 3.6250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087677640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:26 Heat of formation + Delta-G solvation = 50.993549 kcal Electronic energy + Delta-G solvation = -29444.751541 eV Core-core repulsion = 25239.594391 eV Total energy + Delta-G solvation = -4205.157150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.33884 -43.55859 -41.27195 -39.57951 -35.98511 -35.38166 -34.54268 -34.31713 -33.86110 -33.46030 -30.56284 -29.84465 -28.72668 -26.79237 -25.63873 -24.60541 -23.66140 -23.19998 -22.40170 -21.96487 -21.78406 -20.95432 -19.85694 -19.32345 -19.14926 -18.20325 -17.79981 -17.51448 -17.07088 -16.39258 -16.24616 -16.10555 -15.85693 -15.56936 -15.26495 -15.08809 -14.91450 -14.66924 -14.08375 -13.89889 -13.85056 -13.71585 -13.49651 -13.41425 -12.99107 -12.88063 -12.73180 -12.56913 -12.25865 -11.94906 -11.90497 -11.81871 -11.79225 -11.73199 -11.64809 -11.53944 -11.40760 -10.89257 -10.46044 -10.32625 -9.25618 -8.95126 -8.19992 -5.34569 -0.53923 0.02247 0.89381 1.12266 1.57304 1.60051 1.67330 1.70585 1.83379 1.85952 2.56661 2.60276 2.67213 3.13326 3.24456 3.42130 3.60318 3.63538 3.68433 3.89044 3.92395 3.99675 4.02842 4.20952 4.22471 4.32641 4.37717 4.51139 4.59582 4.61693 4.75489 4.77934 4.87146 4.93443 4.94602 5.00171 5.01904 5.07395 5.16276 5.23665 5.43533 5.46929 5.61701 5.81697 5.94971 6.12535 6.37631 6.66258 6.80195 6.93808 7.72537 8.33282 9.06380 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.028536 B = 0.001985 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.964043 B =14100.033337 C =14294.974826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.048 0.952 5 C 0.149 3.851 6 H 0.087 0.913 7 N -0.689 5.689 8 C 0.601 3.399 9 O -0.548 6.548 10 C -0.028 4.028 11 C -0.165 4.165 12 C 0.055 3.945 13 C 0.001 3.999 14 C -0.145 4.145 15 C -0.224 4.224 16 C 0.000 4.000 17 O -0.176 6.176 18 O 0.155 5.845 19 N -0.329 5.329 20 C -0.129 4.129 21 C 0.148 3.852 22 N -0.606 5.606 23 C -0.314 4.314 24 H 0.063 0.937 25 C -0.080 4.080 26 N -0.947 5.947 27 Si 1.113 2.887 28 H -0.284 1.284 29 H -0.275 1.275 30 H -0.295 1.295 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.414 0.586 37 H 0.195 0.805 38 H 0.174 0.826 39 H 0.184 0.816 40 H 0.252 0.748 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.028 0.972 44 H 0.008 0.992 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.018 -0.002 -27.205 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.048 3.952 4 H 0.066 0.934 5 C 0.044 3.956 6 H 0.105 0.895 7 N -0.340 5.340 8 C 0.385 3.615 9 O -0.425 6.425 10 C -0.185 4.185 11 C -0.187 4.187 12 C -0.009 4.009 13 C -0.049 4.049 14 C -0.165 4.165 15 C -0.243 4.243 16 C -0.068 4.068 17 O -0.072 6.072 18 O 0.074 5.926 19 N -0.027 5.027 20 C -0.169 4.169 21 C 0.022 3.978 22 N -0.332 5.332 23 C -0.443 4.443 24 H 0.081 0.919 25 C -0.276 4.276 26 N -0.589 5.589 27 Si 0.938 3.062 28 H -0.210 1.210 29 H -0.200 1.200 30 H -0.221 1.221 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.251 0.749 37 H 0.212 0.788 38 H 0.192 0.808 39 H 0.202 0.798 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.026 0.974 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.453 0.526 -24.939 29.343 hybrid contribution 1.063 -0.853 -0.917 1.642 sum 16.516 -0.327 -25.856 30.682 Atomic orbital electron populations 1.21767 0.95477 1.00295 1.02410 1.21828 0.97186 0.96895 0.99949 1.21300 0.90680 0.92730 0.90445 0.93388 1.21853 0.94518 0.98618 0.80584 0.89471 1.45740 1.13652 1.60944 1.13632 1.16998 0.82004 0.78175 0.84310 1.90799 1.54294 1.43992 1.53392 1.23117 0.94427 1.05265 0.95647 1.22817 0.98569 1.04737 0.92623 1.20624 0.86291 1.00729 0.93222 1.18007 0.84482 1.09475 0.92949 1.22405 1.01218 1.01182 0.91669 1.22224 0.93151 1.05781 1.03142 1.25309 0.99709 1.00491 0.81278 1.84072 1.21618 1.63907 1.37601 1.84900 1.19720 1.58849 1.29154 1.74181 1.18427 1.16691 0.93379 1.23066 0.98557 0.98535 0.96699 1.21402 0.86243 0.96640 0.93487 1.44708 1.01635 1.66167 1.20674 1.19786 0.84714 1.47229 0.92577 0.91910 1.27077 1.05993 1.01432 0.93099 1.70852 1.20106 1.31137 1.36809 0.82894 0.72518 0.75639 0.75173 1.21030 1.20047 1.22142 0.92673 0.93176 0.93001 0.91439 0.94678 0.74852 0.78784 0.80819 0.79847 0.73207 0.90460 0.90402 0.95381 0.97442 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.98 71.98 0.65 -4.84 16 2 C -0.12 -4.57 5.47 30.60 0.17 -4.41 16 3 C 0.15 6.16 3.00 45.35 0.14 6.30 16 4 H 0.05 1.85 7.69 -2.39 -0.02 1.83 16 5 C 0.15 5.35 2.76 46.19 0.13 5.48 16 6 H 0.09 3.35 7.40 -2.39 -0.02 3.33 16 7 N -0.69 -20.80 5.20 -439.29 -2.29 -23.09 16 8 C 0.60 18.64 7.85 86.93 0.68 19.32 16 9 O -0.55 -20.12 16.67 -3.69 -0.06 -20.19 16 10 C -0.03 -0.73 7.17 42.79 0.31 -0.42 16 11 C -0.17 -3.65 10.96 22.88 0.25 -3.40 16 12 C 0.05 1.05 7.30 24.32 0.18 1.22 16 13 C 0.00 0.01 7.17 24.13 0.17 0.19 16 14 C -0.14 -1.62 10.86 22.43 0.24 -1.38 16 15 C -0.22 -1.54 10.88 22.10 0.24 -1.30 16 16 C 0.00 0.00 12.08 67.05 0.81 0.81 16 17 O -0.18 -2.50 10.67 -6.57 -0.07 -2.57 16 18 O 0.15 3.14 11.21 66.45 0.74 3.88 16 19 N -0.33 -7.93 11.81 -48.88 -0.58 -8.51 16 20 C -0.13 -4.88 6.77 31.99 0.22 -4.66 16 21 C 0.15 7.02 5.56 86.86 0.48 7.50 16 22 N -0.61 -29.60 2.92 -668.21 -1.95 -31.55 16 23 C -0.31 -16.88 7.22 84.03 0.61 -16.27 16 24 H 0.06 3.34 7.24 -2.91 -0.02 3.32 16 25 C -0.08 -4.48 5.17 84.86 0.44 -4.04 16 26 N -0.95 -57.83 13.05 21.65 0.28 -57.55 16 27 Si 1.11 50.93 29.99 68.60 2.06 52.99 16 28 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 29 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 31 H 0.05 2.56 5.52 -2.39 -0.01 2.54 16 32 H 0.05 1.79 8.13 -2.38 -0.02 1.77 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.41 11.17 8.07 -92.70 -0.75 10.42 16 37 H 0.19 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 40 H 0.25 -0.66 8.06 -2.91 -0.02 -0.68 16 41 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.01 0.40 6.73 -2.39 -0.02 0.39 16 45 H 0.25 15.90 6.20 -92.71 -0.57 15.32 16 Total: -1.00 -70.63 380.11 4.33 -66.30 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.48 Total: 20.17 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.71 Total: 0.09 kcal Atomic # 7 Polarization: -116.16 SS G_CDS: -4.53 Total: -120.69 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.61 Total: -18.87 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.06 Total: 52.99 kcal Total: -70.63 4.33 -66.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087677640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.295 kcal (2) G-P(sol) polarization free energy of solvation -70.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds