Wall clock time and date at job start Wed Apr 1 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46890 * 2 1 4 4 H 1.09004 * 109.99850 * 305.30459 * 3 2 1 5 5 C 1.54330 * 109.88123 * 184.21388 * 3 2 1 6 6 H 1.08997 * 110.71842 * 336.92885 * 5 3 2 7 7 N 1.46495 * 110.72124 * 100.02499 * 5 3 2 8 8 C 1.34780 * 120.00169 * 204.99931 * 7 5 3 9 9 O 1.21290 * 119.99522 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00517 * 180.02562 * 8 7 5 11 11 H 1.09004 * 111.01640 * 339.30714 * 10 8 7 12 12 C 1.55595 * 111.16796 * 215.00242 * 10 8 7 13 13 C 1.54065 * 104.29591 * 204.21663 * 12 10 8 14 14 N 1.47066 * 110.11021 * 45.19863 * 13 12 10 15 15 C 1.46499 * 126.30417 * 151.00816 * 14 13 12 16 16 S 1.66999 * 107.39531 * 330.97428 * 14 13 12 17 17 O 1.42107 * 105.13471 * 248.59942 * 16 14 13 18 18 O 1.42097 * 105.13461 * 118.92466 * 16 14 13 19 19 C 1.55152 * 102.93979 * 218.38923 * 5 3 2 20 20 C 1.54906 * 101.58536 * 35.49990 * 19 5 3 21 21 N 1.47019 * 109.88613 * 66.40170 * 3 2 1 22 22 C 1.36936 * 125.64947 * 298.38453 * 21 3 2 23 23 H 1.07998 * 119.99657 * 334.96760 * 22 21 3 24 24 C 1.38811 * 119.99955 * 154.97726 * 22 21 3 25 25 N 1.31628 * 119.99617 * 159.51999 * 24 22 21 26 26 Si 1.86796 * 120.00152 * 339.51810 * 24 22 21 27 27 H 1.48501 * 109.46870 * 84.73135 * 26 24 22 28 28 H 1.48495 * 109.47054 * 204.72565 * 26 24 22 29 29 H 1.48499 * 109.47250 * 324.73157 * 26 24 22 30 30 H 1.09004 * 109.47254 * 292.25735 * 1 2 3 31 31 H 1.08995 * 109.47239 * 52.25489 * 1 2 3 32 32 H 1.09001 * 109.47184 * 172.25454 * 1 2 3 33 33 H 1.09001 * 109.47007 * 240.00324 * 2 1 3 34 34 H 1.08995 * 109.47202 * 120.00107 * 2 1 3 35 35 H 0.96996 * 120.00394 * 25.00322 * 7 5 3 36 36 H 1.08999 * 110.46867 * 322.91558 * 12 10 8 37 37 H 1.08998 * 110.47208 * 85.38142 * 12 10 8 38 38 H 1.08999 * 109.35672 * 165.38053 * 13 12 10 39 39 H 1.09004 * 109.35368 * 285.02161 * 13 12 10 40 40 H 1.09002 * 109.46700 * 359.97438 * 15 14 13 41 41 H 1.08992 * 109.46999 * 119.97217 * 15 14 13 42 42 H 1.09000 * 109.46773 * 239.97913 * 15 14 13 43 43 H 1.08998 * 111.00936 * 277.42602 * 19 5 3 44 44 H 1.09004 * 111.00869 * 153.57505 * 19 5 3 45 45 H 1.09003 * 110.37000 * 204.15072 * 20 19 5 46 46 H 1.09000 * 110.36855 * 81.82649 * 20 19 5 47 47 H 0.97001 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6061 1.9913 -0.8359 5 6 3.5795 1.4549 -0.1066 6 1 3.9978 0.5106 0.2417 7 7 4.0016 1.7306 -1.4821 8 6 5.2059 1.3077 -1.9151 9 8 5.9403 0.6993 -1.1657 10 6 5.6404 1.5917 -3.3298 11 1 4.7820 1.8040 -3.9672 12 6 6.4895 0.4205 -3.9026 13 6 7.3401 1.0729 -5.0092 14 7 7.9124 2.3388 -4.5269 15 6 9.1714 2.9450 -4.9672 16 16 6.8626 2.9586 -3.3856 17 8 6.3077 4.1216 -3.9847 18 8 7.6177 3.0236 -2.1836 19 6 3.9836 2.6195 0.8355 20 6 2.9254 2.4919 1.9595 21 7 1.6848 2.0984 1.2669 22 6 0.4125 2.3085 1.7276 23 1 -0.4107 2.3697 1.0313 24 6 0.1810 2.4431 3.0897 25 7 -0.9174 3.0304 3.5156 26 14 1.4280 1.7908 4.3180 27 1 2.4869 2.8088 4.5362 28 1 0.7485 1.4996 5.6059 29 1 2.0398 0.5457 3.7885 30 1 -0.3634 0.3893 0.9511 31 1 -0.3633 0.6291 -0.8126 32 1 -0.3633 -1.0183 -0.1385 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.4144 2.2174 -2.0813 36 1 7.1303 -0.0003 -3.1278 37 1 5.8425 -0.3504 -4.3211 38 1 8.1465 0.3961 -5.2914 39 1 6.7128 1.2682 -5.8791 40 1 9.6363 2.3098 -5.7212 41 1 8.9717 3.9282 -5.3933 42 1 9.8427 3.0479 -4.1147 43 1 3.8999 3.5802 0.3274 44 1 4.9900 2.4734 1.2280 45 1 2.7909 3.4486 2.4643 46 1 3.2212 1.7235 2.6736 47 1 -1.0794 3.1241 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087758174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:39 Heat of formation + Delta-G solvation = -62.104514 kcal Electronic energy + Delta-G solvation = -29822.064487 eV Core-core repulsion = 25747.446988 eV Total energy + Delta-G solvation = -4074.617498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.23250 -38.35854 -37.44595 -37.35909 -36.23899 -34.41104 -33.52243 -32.57326 -32.13469 -29.67657 -28.26852 -27.04763 -25.93506 -24.35645 -22.88607 -22.20967 -21.30381 -20.57012 -19.76205 -19.14126 -17.98715 -17.61195 -17.08014 -17.02748 -16.30814 -15.78164 -15.49761 -15.11079 -15.03270 -14.63831 -14.48394 -14.21191 -13.78302 -13.63543 -13.50345 -13.32447 -13.16460 -12.87888 -12.50339 -12.45616 -12.40170 -12.29524 -12.24814 -11.93854 -11.93641 -11.57136 -11.46518 -11.14121 -11.03225 -10.90556 -10.70471 -10.48840 -10.34761 -10.23138 -10.03841 -9.89397 -9.48948 -9.38646 -9.01242 -8.62178 -7.04913 -5.98998 -3.33488 -0.35253 2.03969 2.34362 2.75050 3.20277 3.35546 3.37321 3.48375 3.50991 3.92587 3.97327 4.32637 4.42074 4.52590 4.63336 4.68756 4.89655 5.04473 5.07675 5.09372 5.14780 5.16894 5.25603 5.31800 5.38463 5.44306 5.54003 5.75851 5.82815 5.87459 6.04050 6.04307 6.08680 6.22507 6.34654 6.47650 6.56017 6.59267 6.67431 6.71954 6.96148 7.28644 7.30643 7.72621 7.94707 8.28067 8.78638 9.63862 10.13761 11.16369 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002903 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.604727 B = 9643.977916 C =10068.271603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.157 3.843 4 H 0.048 0.952 5 C 0.130 3.870 6 H 0.102 0.898 7 N -0.708 5.708 8 C 0.536 3.464 9 O -0.509 6.509 10 C -0.600 4.600 11 H 0.165 0.835 12 C -0.109 4.109 13 C 0.081 3.919 14 N -0.998 5.998 15 C 0.122 3.878 16 S 2.591 3.409 17 O -0.945 6.945 18 O -0.929 6.929 19 C -0.146 4.146 20 C 0.115 3.885 21 N -0.599 5.599 22 C -0.236 4.236 23 H 0.094 0.906 24 C 0.027 3.973 25 N -0.906 5.906 26 Si 0.880 3.120 27 H -0.284 1.284 28 H -0.303 1.303 29 H -0.274 1.274 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.403 0.597 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.027 0.973 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.702 -4.979 -20.792 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.050 3.950 4 H 0.065 0.935 5 C 0.026 3.974 6 H 0.120 0.880 7 N -0.359 5.359 8 C 0.317 3.683 9 O -0.384 6.384 10 C -0.711 4.711 11 H 0.183 0.817 12 C -0.149 4.149 13 C -0.045 4.045 14 N -0.842 5.842 15 C -0.022 4.022 16 S 2.683 3.317 17 O -0.934 6.934 18 O -0.918 6.918 19 C -0.185 4.185 20 C -0.011 4.011 21 N -0.325 5.325 22 C -0.363 4.363 23 H 0.112 0.888 24 C -0.173 4.173 25 N -0.549 5.549 26 Si 0.710 3.290 27 H -0.211 1.211 28 H -0.231 1.231 29 H -0.200 1.200 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.175 -4.422 -19.607 26.438 hybrid contribution 0.026 -0.858 0.142 0.870 sum 17.201 -5.279 -19.465 26.507 Atomic orbital electron populations 1.21930 0.95234 0.99243 1.04576 1.21904 0.97373 0.97149 0.99983 1.21220 0.89579 0.92756 0.91463 0.93471 1.22273 0.96031 0.99650 0.79453 0.87979 1.46041 1.17439 1.57468 1.14936 1.18885 0.82642 0.80654 0.86093 1.90777 1.52465 1.39494 1.55615 1.30999 1.16266 1.20041 1.03788 0.81734 1.22696 0.97384 0.96017 0.98793 1.22130 0.98653 0.86511 0.97229 1.57136 1.34628 1.32885 1.59526 1.21301 0.82736 0.97799 1.00350 1.06138 0.76257 0.74722 0.74602 1.93636 1.79258 1.43750 1.76734 1.93662 1.66845 1.85193 1.46099 1.23199 0.99440 0.98233 0.97636 1.21943 0.86230 0.98899 0.93981 1.44764 1.01888 1.65947 1.19879 1.18537 0.82818 1.43624 0.91285 0.88807 1.25138 0.96104 0.99280 0.96760 1.69813 1.27087 1.43289 1.14746 0.86966 0.80903 0.80266 0.80836 1.21114 1.23056 1.20010 0.88756 0.93964 0.94974 0.93908 0.92391 0.76157 0.87183 0.86566 0.88455 0.90427 0.90044 0.91964 0.91836 0.90741 0.90854 0.91884 0.95518 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.01 37.16 0.33 -2.45 16 2 C -0.12 -2.18 5.46 -26.73 -0.15 -2.33 16 3 C 0.16 2.86 2.99 -66.95 -0.20 2.66 16 4 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 5 C 0.13 2.13 2.85 -66.10 -0.19 1.95 16 6 H 0.10 1.77 7.25 -51.93 -0.38 1.39 16 7 N -0.71 -9.17 5.18 -52.03 -0.27 -9.44 16 8 C 0.54 6.98 6.73 -10.98 -0.07 6.90 16 9 O -0.51 -8.43 15.73 5.55 0.09 -8.34 16 10 C -0.60 -5.22 3.71 -26.50 -0.10 -5.32 16 11 H 0.16 0.82 8.11 -51.93 -0.42 0.40 16 12 C -0.11 -0.68 6.19 -24.79 -0.15 -0.83 16 13 C 0.08 0.40 6.81 -3.18 -0.02 0.37 16 14 N -1.00 -8.03 3.72 -120.71 -0.45 -8.48 16 15 C 0.12 0.75 11.40 59.85 0.68 1.43 16 16 S 2.59 29.44 5.83 -107.50 -0.63 28.81 16 17 O -0.94 -12.86 18.14 -57.41 -1.04 -13.90 16 18 O -0.93 -14.43 17.75 -57.41 -1.02 -15.45 16 19 C -0.15 -2.58 6.77 -24.59 -0.17 -2.74 16 20 C 0.11 2.46 4.74 -2.53 -0.01 2.45 16 21 N -0.60 -13.54 2.85 -162.57 -0.46 -14.00 16 22 C -0.24 -6.20 7.86 -15.06 -0.12 -6.32 16 23 H 0.09 2.61 7.27 -52.49 -0.38 2.23 16 24 C 0.03 0.74 5.44 -17.43 -0.09 0.65 16 25 N -0.91 -27.07 13.97 55.49 0.78 -26.30 16 26 Si 0.88 22.25 24.35 -169.99 -4.14 18.11 16 27 H -0.28 -7.02 6.73 56.52 0.38 -6.64 16 28 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 29 H -0.27 -6.86 6.79 56.52 0.38 -6.48 16 30 H 0.09 2.07 5.47 -51.93 -0.28 1.79 16 31 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.40 4.08 8.35 -40.82 -0.34 3.74 16 36 H 0.11 0.87 7.35 -51.93 -0.38 0.49 16 37 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.28 8.11 -51.93 -0.42 -0.15 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.43 7.28 -51.93 -0.38 1.05 16 46 H 0.03 0.61 5.44 -51.93 -0.28 0.32 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -36.74 378.32 -9.19 -45.94 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.49 Total: 0.94 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -0.26 Total: -3.59 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.41 Total: -58.22 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.97 Total: -37.69 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -0.63 Total: 28.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.74 -9.19 -45.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087758174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.169 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds