Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46890 * 2 1 4 4 H 1.09004 * 109.99850 * 305.30459 * 3 2 1 5 5 C 1.54330 * 109.88123 * 184.21388 * 3 2 1 6 6 H 1.08997 * 110.71842 * 336.92885 * 5 3 2 7 7 N 1.46495 * 110.72124 * 100.02499 * 5 3 2 8 8 C 1.34780 * 120.00169 * 204.99931 * 7 5 3 9 9 O 1.21290 * 119.99522 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00517 * 180.02562 * 8 7 5 11 11 H 1.09004 * 111.01640 * 339.30714 * 10 8 7 12 12 C 1.55595 * 111.16796 * 215.00242 * 10 8 7 13 13 C 1.54065 * 104.29591 * 204.21663 * 12 10 8 14 14 N 1.47066 * 110.11021 * 45.19863 * 13 12 10 15 15 C 1.46499 * 126.30417 * 151.00816 * 14 13 12 16 16 S 1.66999 * 107.39531 * 330.97428 * 14 13 12 17 17 O 1.42107 * 105.13471 * 248.59942 * 16 14 13 18 18 O 1.42097 * 105.13461 * 118.92466 * 16 14 13 19 19 C 1.55152 * 102.93979 * 218.38923 * 5 3 2 20 20 C 1.54906 * 101.58536 * 35.49990 * 19 5 3 21 21 N 1.47019 * 109.88613 * 66.40170 * 3 2 1 22 22 C 1.36936 * 125.64947 * 298.38453 * 21 3 2 23 23 H 1.07998 * 119.99657 * 334.96760 * 22 21 3 24 24 C 1.38811 * 119.99955 * 154.97726 * 22 21 3 25 25 N 1.31628 * 119.99617 * 159.51999 * 24 22 21 26 26 Si 1.86796 * 120.00152 * 339.51810 * 24 22 21 27 27 H 1.48501 * 109.46870 * 84.73135 * 26 24 22 28 28 H 1.48495 * 109.47054 * 204.72565 * 26 24 22 29 29 H 1.48499 * 109.47250 * 324.73157 * 26 24 22 30 30 H 1.09004 * 109.47254 * 292.25735 * 1 2 3 31 31 H 1.08995 * 109.47239 * 52.25489 * 1 2 3 32 32 H 1.09001 * 109.47184 * 172.25454 * 1 2 3 33 33 H 1.09001 * 109.47007 * 240.00324 * 2 1 3 34 34 H 1.08995 * 109.47202 * 120.00107 * 2 1 3 35 35 H 0.96996 * 120.00394 * 25.00322 * 7 5 3 36 36 H 1.08999 * 110.46867 * 322.91558 * 12 10 8 37 37 H 1.08998 * 110.47208 * 85.38142 * 12 10 8 38 38 H 1.08999 * 109.35672 * 165.38053 * 13 12 10 39 39 H 1.09004 * 109.35368 * 285.02161 * 13 12 10 40 40 H 1.09002 * 109.46700 * 359.97438 * 15 14 13 41 41 H 1.08992 * 109.46999 * 119.97217 * 15 14 13 42 42 H 1.09000 * 109.46773 * 239.97913 * 15 14 13 43 43 H 1.08998 * 111.00936 * 277.42602 * 19 5 3 44 44 H 1.09004 * 111.00869 * 153.57505 * 19 5 3 45 45 H 1.09003 * 110.37000 * 204.15072 * 20 19 5 46 46 H 1.09000 * 110.36855 * 81.82649 * 20 19 5 47 47 H 0.97001 * 119.99743 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6061 1.9913 -0.8359 5 6 3.5795 1.4549 -0.1066 6 1 3.9978 0.5106 0.2417 7 7 4.0016 1.7306 -1.4821 8 6 5.2059 1.3077 -1.9151 9 8 5.9403 0.6993 -1.1657 10 6 5.6404 1.5917 -3.3298 11 1 4.7820 1.8040 -3.9672 12 6 6.4895 0.4205 -3.9026 13 6 7.3401 1.0729 -5.0092 14 7 7.9124 2.3388 -4.5269 15 6 9.1714 2.9450 -4.9672 16 16 6.8626 2.9586 -3.3856 17 8 6.3077 4.1216 -3.9847 18 8 7.6177 3.0236 -2.1836 19 6 3.9836 2.6195 0.8355 20 6 2.9254 2.4919 1.9595 21 7 1.6848 2.0984 1.2669 22 6 0.4125 2.3085 1.7276 23 1 -0.4107 2.3697 1.0313 24 6 0.1810 2.4431 3.0897 25 7 -0.9174 3.0304 3.5156 26 14 1.4280 1.7908 4.3180 27 1 2.4869 2.8088 4.5362 28 1 0.7485 1.4996 5.6059 29 1 2.0398 0.5457 3.7885 30 1 -0.3634 0.3893 0.9511 31 1 -0.3633 0.6291 -0.8126 32 1 -0.3633 -1.0183 -0.1385 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.4144 2.2174 -2.0813 36 1 7.1303 -0.0003 -3.1278 37 1 5.8425 -0.3504 -4.3211 38 1 8.1465 0.3961 -5.2914 39 1 6.7128 1.2682 -5.8791 40 1 9.6363 2.3098 -5.7212 41 1 8.9717 3.9282 -5.3933 42 1 9.8427 3.0479 -4.1147 43 1 3.8999 3.5802 0.3274 44 1 4.9900 2.4734 1.2280 45 1 2.7909 3.4486 2.4643 46 1 3.2212 1.7235 2.6736 47 1 -1.0794 3.1241 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087758174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = -92.925006 kcal Electronic energy + Delta-G solvation = -29823.400964 eV Core-core repulsion = 25747.446988 eV Total energy + Delta-G solvation = -4075.953975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.37253 -39.74239 -38.31465 -38.08013 -37.16915 -35.79729 -34.35559 -34.12405 -33.81133 -31.28436 -29.23148 -28.33762 -26.59259 -25.99298 -23.90178 -23.58429 -22.42509 -21.82931 -21.15797 -20.09985 -18.94198 -18.86768 -18.38170 -17.89519 -17.55973 -17.03218 -16.71217 -16.25911 -16.18610 -15.51180 -15.48369 -15.37690 -15.18724 -14.84619 -14.59151 -14.29988 -14.20031 -14.06943 -13.89586 -13.83430 -13.60232 -13.38867 -13.26885 -13.09488 -12.98098 -12.92004 -12.63880 -12.42363 -12.38476 -12.21569 -12.11258 -12.01979 -11.74856 -11.67228 -11.58568 -11.34887 -11.16360 -10.70048 -10.21437 -10.01052 -8.98196 -8.14766 -5.43449 -1.16704 1.30811 1.32727 1.38666 1.39212 1.45891 1.75703 2.40691 2.43140 2.80554 3.03913 3.12154 3.32394 3.42185 3.59230 3.62317 3.69166 3.90807 4.07214 4.12551 4.20844 4.30595 4.35987 4.43327 4.57786 4.64538 4.64950 4.73155 4.81114 4.82269 4.87205 4.91901 4.94453 4.98563 5.03957 5.05603 5.10724 5.18930 5.30005 5.52715 5.58279 5.69531 5.81269 6.16469 6.28545 6.78022 6.95360 7.56084 8.13590 9.04720 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002903 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.604727 B = 9643.977916 C =10068.271603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.154 3.846 4 H 0.064 0.936 5 C 0.144 3.856 6 H 0.096 0.904 7 N -0.700 5.700 8 C 0.532 3.468 9 O -0.546 6.546 10 C -0.578 4.578 11 H 0.210 0.790 12 C -0.108 4.108 13 C 0.076 3.924 14 N -0.996 5.996 15 C 0.110 3.890 16 S 2.579 3.421 17 O -0.978 6.978 18 O -0.987 6.987 19 C -0.138 4.138 20 C 0.109 3.891 21 N -0.614 5.614 22 C -0.203 4.203 23 H 0.075 0.925 24 C -0.030 4.030 25 N -0.954 5.954 26 Si 0.928 3.072 27 H -0.279 1.279 28 H -0.312 1.312 29 H -0.271 1.271 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.420 0.580 36 H 0.089 0.911 37 H 0.153 0.847 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.122 -6.812 -24.600 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.048 3.952 4 H 0.082 0.918 5 C 0.038 3.962 6 H 0.114 0.886 7 N -0.353 5.353 8 C 0.316 3.684 9 O -0.423 6.423 10 C -0.691 4.691 11 H 0.227 0.773 12 C -0.148 4.148 13 C -0.049 4.049 14 N -0.842 5.842 15 C -0.033 4.033 16 S 2.675 3.325 17 O -0.967 6.967 18 O -0.976 6.976 19 C -0.178 4.178 20 C -0.016 4.016 21 N -0.340 5.340 22 C -0.331 4.331 23 H 0.092 0.908 24 C -0.225 4.225 25 N -0.602 5.602 26 Si 0.759 3.241 27 H -0.205 1.205 28 H -0.241 1.241 29 H -0.197 1.197 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.258 0.742 36 H 0.108 0.892 37 H 0.171 0.829 38 H 0.141 0.859 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 18.650 -6.232 -23.470 30.619 hybrid contribution -0.381 -0.348 1.164 1.273 sum 18.270 -6.580 -22.307 29.574 Atomic orbital electron populations 1.21815 0.95844 1.00490 1.02362 1.21849 0.96667 0.96501 1.00893 1.21397 0.91100 0.93175 0.89517 0.91803 1.21889 0.94389 0.98720 0.81156 0.88562 1.45869 1.18073 1.57613 1.13720 1.19465 0.81870 0.79597 0.87451 1.90773 1.53366 1.41073 1.57072 1.30890 1.17059 1.19389 1.01779 0.77253 1.22893 0.97367 0.95790 0.98704 1.22457 0.99820 0.85369 0.97250 1.56992 1.34636 1.33992 1.58562 1.21543 0.82070 0.98783 1.00881 1.06088 0.76906 0.75306 0.74176 1.93596 1.79924 1.46263 1.76876 1.93598 1.68645 1.86415 1.48904 1.23131 0.98380 0.99519 0.96747 1.21945 0.86915 0.97615 0.95129 1.44863 1.01047 1.66904 1.21214 1.18457 0.83880 1.40153 0.90632 0.90777 1.25601 0.97565 1.00890 0.98412 1.69913 1.29338 1.46297 1.14606 0.86171 0.79229 0.79915 0.78825 1.20517 1.24092 1.19672 0.93124 0.93097 0.92818 0.90179 0.94176 0.74208 0.89217 0.82947 0.85857 0.87332 0.86566 0.91957 0.92817 0.89737 0.90248 0.93675 0.96342 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.01 71.98 0.65 -4.49 16 2 C -0.12 -3.90 5.46 30.59 0.17 -3.73 16 3 C 0.15 5.29 2.99 45.34 0.14 5.42 16 4 H 0.06 2.02 7.72 -2.39 -0.02 2.01 16 5 C 0.14 4.39 2.85 46.18 0.13 4.53 16 6 H 0.10 3.13 7.25 -2.39 -0.02 3.11 16 7 N -0.70 -15.90 5.18 -436.92 -2.26 -18.16 16 8 C 0.53 12.37 6.73 87.66 0.59 12.96 16 9 O -0.55 -17.18 15.73 -3.06 -0.05 -17.23 16 10 C -0.58 -7.90 3.71 30.74 0.11 -7.79 16 11 H 0.21 0.90 8.11 -2.38 -0.02 0.88 16 12 C -0.11 -0.87 6.19 31.85 0.20 -0.67 16 13 C 0.08 0.38 6.81 86.63 0.59 0.97 16 14 N -1.00 -13.39 3.72 -535.81 -1.99 -15.38 16 15 C 0.11 1.14 11.40 127.77 1.46 2.59 16 16 S 2.58 54.93 5.83 -56.49 -0.33 54.60 16 17 O -0.98 -25.58 18.14 -127.77 -2.32 -27.89 16 18 O -0.99 -31.05 17.75 -127.77 -2.27 -33.32 16 19 C -0.14 -4.72 6.77 31.98 0.22 -4.51 16 20 C 0.11 4.64 4.74 86.85 0.41 5.05 16 21 N -0.61 -27.50 2.85 -668.25 -1.91 -29.40 16 22 C -0.20 -10.82 7.86 84.03 0.66 -10.16 16 23 H 0.07 4.22 7.27 -2.91 -0.02 4.20 16 24 C -0.03 -1.73 5.44 84.86 0.46 -1.26 16 25 N -0.95 -59.08 13.97 21.65 0.30 -58.77 16 26 Si 0.93 47.17 24.35 68.60 1.67 48.84 16 27 H -0.28 -13.70 6.73 99.48 0.67 -13.03 16 28 H -0.31 -16.21 7.11 99.48 0.71 -15.50 16 29 H -0.27 -13.42 6.79 99.48 0.68 -12.74 16 30 H 0.05 2.22 5.47 -2.38 -0.01 2.20 16 31 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.42 6.79 8.35 -92.71 -0.77 6.02 16 36 H 0.09 1.17 7.35 -2.39 -0.02 1.16 16 37 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.12 0.37 8.11 -2.39 -0.02 0.35 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 45 H 0.04 2.06 7.28 -2.39 -0.02 2.04 16 46 H 0.02 0.84 5.44 -2.39 -0.01 0.82 16 47 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -84.88 378.32 -3.23 -88.11 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.14 Total: 9.70 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.78 Total: -1.08 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -5.86 Total: -121.72 kcal Atomic # 8 Polarization: -73.81 SS G_CDS: -4.63 Total: -78.44 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.67 Total: 48.84 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.33 Total: 54.60 kcal Total: -84.88 -3.23 -88.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087758174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.818 kcal (2) G-P(sol) polarization free energy of solvation -84.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds