Wall clock time and date at job start Wed Apr 1 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.08993 * 109.87862 * 54.13289 * 3 2 1 5 5 C 1.54326 * 110.01018 * 293.03285 * 3 2 1 6 6 H 1.09003 * 110.72109 * 336.86479 * 5 3 2 7 7 N 1.46501 * 110.72192 * 99.95518 * 5 3 2 8 8 C 1.34768 * 120.00237 * 205.00167 * 7 5 3 9 9 O 1.21600 * 120.00271 * 0.02562 * 8 7 5 10 10 C 1.47526 * 119.99863 * 180.02562 * 8 7 5 11 11 C 1.40090 * 119.93211 * 0.02562 * 10 8 7 12 12 C 1.36292 * 120.38498 * 179.97438 * 11 10 8 13 13 C 1.39861 * 120.04188 * 359.97438 * 12 11 10 14 14 N 1.35818 * 133.51344 * 179.97438 * 13 12 11 15 15 C 1.30778 * 108.79334 * 180.02562 * 14 13 12 16 16 O 1.35098 * 124.91950 * 180.02562 * 15 14 13 17 17 O 1.34320 * 110.15889 * 0.02562 * 15 14 13 18 18 C 1.35315 * 108.12969 * 359.97438 * 17 15 14 19 19 C 1.38105 * 133.76613 * 180.33236 * 18 17 15 20 20 C 1.55150 * 102.94562 * 218.32307 * 5 3 2 21 21 C 1.54689 * 101.67867 * 35.33379 * 20 5 3 22 22 N 1.47020 * 109.88233 * 175.15318 * 3 2 1 23 23 C 1.36938 * 125.64739 * 298.47577 * 22 3 2 24 24 H 1.08005 * 119.99480 * 347.82561 * 23 22 3 25 25 C 1.38808 * 120.00550 * 168.10310 * 23 22 3 26 26 N 1.31626 * 119.99543 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00543 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46977 * 90.00083 * 27 25 23 29 29 H 1.48497 * 109.47569 * 210.00384 * 27 25 23 30 30 H 1.48509 * 109.47087 * 330.00398 * 27 25 23 31 31 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 32 32 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 33 33 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 34 34 H 1.09000 * 109.47336 * 239.99825 * 2 1 3 35 35 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 36 36 H 0.97010 * 119.99248 * 25.00321 * 7 5 3 37 37 H 1.08002 * 119.80905 * 359.97438 * 11 10 8 38 38 H 1.08002 * 119.98326 * 180.02562 * 12 11 10 39 39 H 0.96699 * 113.99840 * 359.97438 * 16 15 14 40 40 H 1.07997 * 120.18417 * 359.94740 * 19 18 17 41 41 H 1.09001 * 111.00651 * 153.57675 * 20 5 3 42 42 H 1.09007 * 111.00616 * 277.43099 * 20 5 3 43 43 H 1.09001 * 110.39799 * 204.36620 * 21 20 5 44 44 H 1.09000 * 110.23668 * 82.11083 * 21 20 5 45 45 H 0.96999 * 119.99985 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8306 5 6 1.6810 2.1295 -1.3345 6 1 1.5269 1.3896 -2.1200 7 7 0.4935 2.9735 -1.1801 8 6 -0.2789 3.2520 -2.2488 9 8 0.0096 2.8025 -3.3412 10 6 -1.4744 4.1024 -2.0933 11 6 -1.8050 4.6200 -0.8343 12 6 -2.9071 5.4070 -0.6802 13 6 -3.7156 5.7031 -1.7824 14 7 -4.8472 6.4371 -1.9417 15 6 -5.2061 6.3905 -3.1984 16 8 -6.2895 7.0092 -3.7167 17 8 -4.3416 5.6384 -3.8992 18 6 -3.3904 5.1876 -3.0489 19 6 -2.2697 4.3952 -3.2024 20 6 2.9349 2.9947 -1.6283 21 6 4.0702 2.0954 -1.0849 22 7 3.5054 1.4549 0.1168 23 6 4.2263 0.9588 1.1701 24 1 3.7255 0.6921 2.0892 25 6 5.6012 0.8039 1.0587 26 7 6.2122 1.1345 -0.0593 27 14 6.5845 0.1279 2.4958 28 1 6.6595 -1.3516 2.3919 29 1 7.9562 0.6961 2.4681 30 1 5.9196 0.5016 3.7701 31 1 -0.3633 -1.0230 0.0976 32 1 -0.3634 0.5960 0.8372 33 1 -0.3634 0.4270 -0.9348 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.2632 3.3318 -0.3085 37 1 -1.1831 4.3941 0.0193 38 1 -3.1557 5.8029 0.2933 39 1 -6.8040 7.5098 -3.0688 40 1 -2.0127 4.0006 -4.1743 41 1 3.0488 3.1668 -2.6986 42 1 2.8946 3.9385 -1.0845 43 1 4.9389 2.6983 -0.8207 44 1 4.3411 1.3419 -1.8245 45 1 7.1729 1.0260 -0.1373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087841323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:13 Heat of formation + Delta-G solvation = -2.422374 kcal Electronic energy + Delta-G solvation = -29749.315382 eV Core-core repulsion = 25541.841944 eV Total energy + Delta-G solvation = -4207.473438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -43.75046 -40.20136 -38.90484 -38.15959 -37.32958 -34.96892 -34.16607 -32.81517 -31.81547 -31.16772 -30.08037 -28.84066 -26.63264 -24.89879 -24.17073 -23.89562 -22.49988 -22.15240 -20.96565 -20.27268 -19.88689 -19.38979 -18.58579 -18.02344 -17.69114 -16.92165 -16.39698 -16.03395 -15.14854 -14.99668 -14.87447 -14.58677 -14.37765 -14.20437 -14.00327 -13.91583 -13.77823 -13.24117 -13.16620 -12.85990 -12.71529 -12.08051 -11.97377 -11.94293 -11.69070 -11.42301 -11.16298 -11.00612 -10.90519 -10.86163 -10.64871 -10.47710 -10.34673 -10.10043 -9.86900 -9.72807 -9.66018 -9.32317 -8.81828 -8.63523 -8.55269 -6.84708 -5.75998 -3.12642 0.06195 0.76339 1.07390 1.77663 2.74159 2.94219 3.25612 3.37882 3.43234 3.44808 3.51463 3.92325 4.27845 4.44578 4.50770 4.61393 4.74325 4.85622 5.14335 5.23695 5.33668 5.48635 5.52159 5.52939 5.57869 5.73155 5.76200 5.78932 5.81098 5.84749 6.01296 6.04837 6.20556 6.24962 6.37341 6.39618 6.44889 6.53164 6.65542 6.70264 6.92062 7.09113 7.10585 7.50861 7.56565 7.62781 7.78043 8.23232 8.27775 9.16332 9.77415 10.43989 11.35022 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026997 B = 0.002125 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.906327 B =13173.303125 C =13314.017124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.137 3.863 6 H 0.097 0.903 7 N -0.704 5.704 8 C 0.560 3.440 9 O -0.535 6.535 10 C -0.112 4.112 11 C -0.076 4.076 12 C -0.076 4.076 13 C 0.072 3.928 14 N -0.526 5.526 15 C 0.456 3.544 16 O -0.413 6.413 17 O -0.197 6.197 18 C -0.009 4.009 19 C -0.017 4.017 20 C -0.156 4.156 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.226 4.226 24 H 0.076 0.924 25 C -0.005 4.005 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.443 0.557 40 H 0.152 0.848 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.550 10.592 -3.063 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.115 0.885 7 N -0.355 5.355 8 C 0.346 3.654 9 O -0.413 6.413 10 C -0.115 4.115 11 C -0.096 4.096 12 C -0.095 4.095 13 C -0.041 4.041 14 N -0.277 5.277 15 C 0.208 3.792 16 O -0.215 6.215 17 O -0.090 6.090 18 C -0.058 4.058 19 C -0.036 4.036 20 C -0.196 4.196 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.355 4.355 24 H 0.094 0.906 25 C -0.202 4.202 26 N -0.564 5.564 27 Si 0.741 3.259 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.303 0.697 40 H 0.170 0.830 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.303 10.334 -3.983 24.901 hybrid contribution 0.278 -0.193 0.894 0.956 sum -22.024 10.141 -3.089 24.443 Atomic orbital electron populations 1.21773 0.97222 1.00574 1.00919 1.22021 0.93608 0.99106 1.02461 1.21073 0.87249 0.93458 0.92958 0.94735 1.22187 0.83011 0.92437 0.99064 0.88491 1.45968 1.27229 1.51589 1.10690 1.17825 0.82299 0.80508 0.84753 1.90808 1.72272 1.52673 1.25518 1.19747 0.97114 1.01495 0.93178 1.20979 0.96309 0.95558 0.96761 1.19910 0.93408 0.98917 0.97259 1.19648 0.93219 0.96874 0.94317 1.71169 1.16018 1.27108 1.13404 1.22318 0.86475 0.88055 0.82386 1.84656 1.33009 1.64067 1.39734 1.84393 1.32271 1.55175 1.37207 1.19776 0.93578 1.04200 0.88229 1.19853 0.88926 0.94202 1.00665 1.23403 0.96568 0.99143 1.00505 1.21450 0.93189 0.93171 0.87535 1.44451 0.98462 1.68873 1.20114 1.18940 0.89317 1.35988 0.91233 0.90629 1.24877 0.96893 1.01146 0.97275 1.69925 1.08815 1.52704 1.24936 0.86144 0.79520 0.78751 0.81457 1.21550 1.21707 1.20664 0.93664 0.93411 0.93316 0.92370 0.91623 0.76671 0.83821 0.83795 0.69710 0.83027 0.91790 0.91949 0.90231 0.95620 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.65 37.16 0.36 -1.72 16 2 C -0.13 -2.36 5.43 -26.73 -0.15 -2.50 16 3 C 0.16 3.03 2.91 -66.95 -0.19 2.84 16 4 H 0.04 0.63 7.72 -51.93 -0.40 0.23 16 5 C 0.14 2.34 2.10 -66.10 -0.14 2.20 16 6 H 0.10 1.81 7.18 -51.93 -0.37 1.44 16 7 N -0.70 -9.43 4.91 -53.07 -0.26 -9.70 16 8 C 0.56 7.84 7.76 -12.48 -0.10 7.74 16 9 O -0.53 -9.41 15.97 5.28 0.08 -9.32 16 10 C -0.11 -1.25 5.88 -104.91 -0.62 -1.87 16 11 C -0.08 -0.66 9.46 -39.59 -0.37 -1.04 16 12 C -0.08 -0.66 10.03 -39.67 -0.40 -1.06 16 13 C 0.07 0.76 7.23 -84.62 -0.61 0.15 16 14 N -0.53 -5.23 11.36 -12.72 -0.14 -5.37 16 15 C 0.46 4.10 9.54 52.31 0.50 4.60 16 16 O -0.41 -2.15 13.62 -40.30 -0.55 -2.70 16 17 O -0.20 -2.17 10.79 -20.51 -0.22 -2.40 16 18 C -0.01 -0.10 7.40 -38.76 -0.29 -0.39 16 19 C -0.02 -0.19 9.60 -39.13 -0.38 -0.57 16 20 C -0.16 -2.93 6.76 -24.70 -0.17 -3.10 16 21 C 0.17 4.03 5.45 -2.65 -0.01 4.01 16 22 N -0.59 -14.20 3.13 -162.71 -0.51 -14.71 16 23 C -0.23 -5.97 9.72 -15.06 -0.15 -6.12 16 24 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 25 C -0.01 -0.14 5.47 -17.43 -0.10 -0.23 16 26 N -0.92 -26.17 10.48 55.49 0.58 -25.58 16 27 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.69 7.48 -51.93 -0.39 0.30 16 34 H 0.06 1.11 8.03 -51.93 -0.42 0.70 16 35 H 0.07 1.26 7.85 -51.93 -0.41 0.86 16 36 H 0.40 4.26 6.37 -40.82 -0.26 4.00 16 37 H 0.14 0.90 6.36 -52.49 -0.33 0.57 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.44 -0.14 9.06 45.56 0.41 0.27 16 40 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 2.08 6.75 -51.93 -0.35 1.73 16 44 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -33.35 374.82 -8.20 -41.54 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.00 Total: 3.18 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -2.81 Total: 2.95 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.33 Total: -55.36 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.69 Total: -14.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.35 -8.20 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087841323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.122 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds