Wall clock time and date at job start Wed Apr 1 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46699 * 2 1 4 4 H 1.08993 * 109.87862 * 54.13289 * 3 2 1 5 5 C 1.54326 * 110.01018 * 293.03285 * 3 2 1 6 6 H 1.09003 * 110.72109 * 336.86479 * 5 3 2 7 7 N 1.46501 * 110.72192 * 99.95518 * 5 3 2 8 8 C 1.34768 * 120.00237 * 205.00167 * 7 5 3 9 9 O 1.21600 * 120.00271 * 0.02562 * 8 7 5 10 10 C 1.47526 * 119.99863 * 180.02562 * 8 7 5 11 11 C 1.40090 * 119.93211 * 0.02562 * 10 8 7 12 12 C 1.36292 * 120.38498 * 179.97438 * 11 10 8 13 13 C 1.39861 * 120.04188 * 359.97438 * 12 11 10 14 14 N 1.35818 * 133.51344 * 179.97438 * 13 12 11 15 15 C 1.30778 * 108.79334 * 180.02562 * 14 13 12 16 16 O 1.35098 * 124.91950 * 180.02562 * 15 14 13 17 17 O 1.34320 * 110.15889 * 0.02562 * 15 14 13 18 18 C 1.35315 * 108.12969 * 359.97438 * 17 15 14 19 19 C 1.38105 * 133.76613 * 180.33236 * 18 17 15 20 20 C 1.55150 * 102.94562 * 218.32307 * 5 3 2 21 21 C 1.54689 * 101.67867 * 35.33379 * 20 5 3 22 22 N 1.47020 * 109.88233 * 175.15318 * 3 2 1 23 23 C 1.36938 * 125.64739 * 298.47577 * 22 3 2 24 24 H 1.08005 * 119.99480 * 347.82561 * 23 22 3 25 25 C 1.38808 * 120.00550 * 168.10310 * 23 22 3 26 26 N 1.31626 * 119.99543 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00543 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46977 * 90.00083 * 27 25 23 29 29 H 1.48497 * 109.47569 * 210.00384 * 27 25 23 30 30 H 1.48509 * 109.47087 * 330.00398 * 27 25 23 31 31 H 1.08996 * 109.47122 * 185.44729 * 1 2 3 32 32 H 1.09000 * 109.47495 * 305.44830 * 1 2 3 33 33 H 1.09005 * 109.47437 * 65.45110 * 1 2 3 34 34 H 1.09000 * 109.47336 * 239.99825 * 2 1 3 35 35 H 1.09001 * 109.46966 * 119.99441 * 2 1 3 36 36 H 0.97010 * 119.99248 * 25.00321 * 7 5 3 37 37 H 1.08002 * 119.80905 * 359.97438 * 11 10 8 38 38 H 1.08002 * 119.98326 * 180.02562 * 12 11 10 39 39 H 0.96699 * 113.99840 * 359.97438 * 16 15 14 40 40 H 1.07997 * 120.18417 * 359.94740 * 19 18 17 41 41 H 1.09001 * 111.00651 * 153.57675 * 20 5 3 42 42 H 1.09007 * 111.00616 * 277.43099 * 20 5 3 43 43 H 1.09001 * 110.39799 * 204.36620 * 21 20 5 44 44 H 1.09000 * 110.23668 * 82.11083 * 21 20 5 45 45 H 0.96999 * 119.99985 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9921 0.8306 5 6 1.6810 2.1295 -1.3345 6 1 1.5269 1.3896 -2.1200 7 7 0.4935 2.9735 -1.1801 8 6 -0.2789 3.2520 -2.2488 9 8 0.0096 2.8025 -3.3412 10 6 -1.4744 4.1024 -2.0933 11 6 -1.8050 4.6200 -0.8343 12 6 -2.9071 5.4070 -0.6802 13 6 -3.7156 5.7031 -1.7824 14 7 -4.8472 6.4371 -1.9417 15 6 -5.2061 6.3905 -3.1984 16 8 -6.2895 7.0092 -3.7167 17 8 -4.3416 5.6384 -3.8992 18 6 -3.3904 5.1876 -3.0489 19 6 -2.2697 4.3952 -3.2024 20 6 2.9349 2.9947 -1.6283 21 6 4.0702 2.0954 -1.0849 22 7 3.5054 1.4549 0.1168 23 6 4.2263 0.9588 1.1701 24 1 3.7255 0.6921 2.0892 25 6 5.6012 0.8039 1.0587 26 7 6.2122 1.1345 -0.0593 27 14 6.5845 0.1279 2.4958 28 1 6.6595 -1.3516 2.3919 29 1 7.9562 0.6961 2.4681 30 1 5.9196 0.5016 3.7701 31 1 -0.3633 -1.0230 0.0976 32 1 -0.3634 0.5960 0.8372 33 1 -0.3634 0.4270 -0.9348 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.2632 3.3318 -0.3085 37 1 -1.1831 4.3941 0.0193 38 1 -3.1557 5.8029 0.2933 39 1 -6.8040 7.5098 -3.0688 40 1 -2.0127 4.0006 -4.1743 41 1 3.0488 3.1668 -2.6986 42 1 2.8946 3.9385 -1.0845 43 1 4.9389 2.6983 -0.8207 44 1 4.3411 1.3419 -1.8245 45 1 7.1729 1.0260 -0.1373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087841323.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:12 Heat of formation + Delta-G solvation = -29.082146 kcal Electronic energy + Delta-G solvation = -29750.471436 eV Core-core repulsion = 25541.841944 eV Total energy + Delta-G solvation = -4208.629492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.48405 -41.34134 -39.73608 -39.21811 -38.35443 -35.73153 -35.66101 -34.30742 -33.49215 -31.93083 -31.27767 -30.30697 -28.06711 -26.47560 -25.17064 -24.82837 -23.59514 -23.13606 -22.27970 -21.75507 -21.29570 -20.04582 -19.53101 -18.85773 -18.71718 -18.41337 -17.54767 -17.14020 -16.69958 -16.07526 -15.90263 -15.81027 -15.61602 -15.32166 -15.09875 -14.95914 -14.77490 -14.57707 -14.28265 -13.93925 -13.75326 -13.57661 -13.52127 -13.20828 -12.85529 -12.72084 -12.69819 -12.55548 -12.20366 -12.15384 -12.00235 -11.93877 -11.88797 -11.75038 -11.52195 -11.33793 -11.08463 -10.65250 -10.07640 -10.02348 -9.40776 -8.80936 -7.80981 -5.18670 -0.72868 0.03813 0.46116 1.00424 1.49676 1.51003 1.59260 1.82527 1.99542 2.38147 2.54244 2.64120 3.21536 3.37805 3.52729 3.67896 3.70010 3.85338 3.92599 3.94453 3.95875 4.17543 4.23881 4.41522 4.45935 4.53457 4.65014 4.68530 4.78006 4.81645 4.84469 4.91403 5.06469 5.07313 5.09782 5.18108 5.24721 5.30355 5.36006 5.49824 5.54316 5.61800 5.68857 5.77181 5.87736 6.27215 6.49974 6.53225 7.12672 7.17933 7.80894 8.46851 9.29327 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026997 B = 0.002125 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.906327 B =13173.303125 C =13314.017124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.059 0.941 5 C 0.156 3.844 6 H 0.080 0.920 7 N -0.691 5.691 8 C 0.565 3.435 9 O -0.576 6.576 10 C -0.121 4.121 11 C -0.061 4.061 12 C -0.071 4.071 13 C 0.066 3.934 14 N -0.534 5.534 15 C 0.464 3.536 16 O -0.403 6.403 17 O -0.214 6.214 18 C -0.027 4.027 19 C -0.024 4.024 20 C -0.142 4.142 21 C 0.179 3.821 22 N -0.613 5.613 23 C -0.226 4.226 24 H 0.085 0.915 25 C -0.067 4.067 26 N -0.951 5.951 27 Si 0.974 3.026 28 H -0.291 1.291 29 H -0.299 1.299 30 H -0.265 1.265 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.050 0.950 36 H 0.415 0.585 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.464 0.536 40 H 0.141 0.859 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.046 0.954 44 H -0.010 1.010 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.443 11.814 -0.899 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.076 0.924 5 C 0.051 3.949 6 H 0.098 0.902 7 N -0.342 5.342 8 C 0.354 3.646 9 O -0.456 6.456 10 C -0.124 4.124 11 C -0.081 4.081 12 C -0.089 4.089 13 C -0.047 4.047 14 N -0.286 5.286 15 C 0.216 3.784 16 O -0.209 6.209 17 O -0.109 6.109 18 C -0.076 4.076 19 C -0.044 4.044 20 C -0.182 4.182 21 C 0.053 3.947 22 N -0.338 5.338 23 C -0.355 4.355 24 H 0.103 0.897 25 C -0.260 4.260 26 N -0.600 5.600 27 Si 0.803 3.197 28 H -0.218 1.218 29 H -0.225 1.225 30 H -0.189 1.189 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.254 0.746 37 H 0.192 0.808 38 H 0.190 0.810 39 H 0.329 0.671 40 H 0.159 0.841 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.008 0.992 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.286 11.592 -1.772 27.872 hybrid contribution 1.019 -0.506 0.161 1.149 sum -24.267 11.086 -1.610 26.728 Atomic orbital electron populations 1.21662 0.93777 1.01944 1.01890 1.21917 0.96531 0.97697 1.00551 1.21277 0.84493 0.94598 0.94478 0.92380 1.21695 0.83701 0.91994 0.97538 0.90194 1.45662 1.25876 1.51009 1.11672 1.18164 0.82621 0.79943 0.83914 1.90798 1.73373 1.54298 1.27166 1.19465 0.96259 1.02284 0.94429 1.21227 0.96311 0.94274 0.96283 1.20240 0.92631 0.98223 0.97847 1.20058 0.93505 0.96531 0.94561 1.71201 1.16084 1.27643 1.13669 1.22578 0.86569 0.87183 0.82065 1.84691 1.31874 1.63649 1.40684 1.84360 1.32805 1.55812 1.37923 1.19788 0.93904 1.05015 0.88849 1.19803 0.89421 0.94585 1.00548 1.23213 0.95487 0.98912 1.00551 1.21148 0.93991 0.92539 0.87028 1.44691 1.00761 1.68862 1.19476 1.19317 0.89664 1.34420 0.92125 0.89715 1.25676 0.98193 1.02432 0.99679 1.70145 1.08363 1.54560 1.26913 0.85141 0.77666 0.77590 0.79317 1.21787 1.22539 1.18943 0.92488 0.91095 0.93279 0.94734 0.93156 0.74575 0.80836 0.80975 0.67052 0.84085 0.91541 0.90426 0.93540 0.99213 0.94518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.65 71.98 0.69 -2.75 16 2 C -0.13 -4.42 5.43 30.60 0.17 -4.26 16 3 C 0.16 5.77 2.91 45.34 0.13 5.90 16 4 H 0.06 1.90 7.72 -2.39 -0.02 1.88 16 5 C 0.16 5.19 2.10 46.18 0.10 5.29 16 6 H 0.08 3.00 7.18 -2.39 -0.02 2.98 16 7 N -0.69 -16.80 4.91 -440.09 -2.16 -18.96 16 8 C 0.57 14.98 7.76 86.69 0.67 15.65 16 9 O -0.58 -20.23 15.97 -4.03 -0.06 -20.30 16 10 C -0.12 -2.48 5.88 -20.05 -0.12 -2.60 16 11 C -0.06 -0.84 9.46 22.27 0.21 -0.63 16 12 C -0.07 -0.97 10.03 22.21 0.22 -0.74 16 13 C 0.07 1.25 7.23 39.48 0.29 1.53 16 14 N -0.53 -9.39 11.36 -422.44 -4.80 -14.19 16 15 C 0.46 7.54 9.54 130.40 1.24 8.78 16 16 O -0.40 -3.30 13.62 -61.46 -0.84 -4.14 16 17 O -0.21 -4.57 10.79 9.34 0.10 -4.47 16 18 C -0.03 -0.58 7.40 22.80 0.17 -0.41 16 19 C -0.02 -0.53 9.60 22.56 0.22 -0.31 16 20 C -0.14 -5.31 6.76 31.91 0.22 -5.09 16 21 C 0.18 8.71 5.45 86.78 0.47 9.18 16 22 N -0.61 -29.54 3.13 -668.70 -2.09 -31.63 16 23 C -0.23 -11.95 9.72 84.03 0.82 -11.14 16 24 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 25 C -0.07 -3.70 5.47 84.86 0.46 -3.23 16 26 N -0.95 -56.45 10.48 21.65 0.23 -56.22 16 27 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 30 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.26 7.48 -2.38 -0.02 1.24 16 34 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 35 H 0.05 1.89 7.85 -2.39 -0.02 1.87 16 36 H 0.42 7.20 6.37 -92.70 -0.59 6.61 16 37 H 0.17 1.26 6.36 -2.91 -0.02 1.24 16 38 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 39 H 0.46 -1.55 9.06 -74.06 -0.67 -2.22 16 40 H 0.14 3.33 7.64 -2.91 -0.02 3.30 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 43 H 0.05 2.55 6.75 -2.39 -0.02 2.53 16 44 H -0.01 -0.56 8.11 -2.39 -0.02 -0.58 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -75.46 374.82 -1.84 -77.29 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -0.20 Total: 10.72 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 5.96 Total: 15.17 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -8.83 Total: -121.00 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.80 Total: -28.91 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -75.46 -1.84 -77.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087841323.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.213 kcal (2) G-P(sol) polarization free energy of solvation -75.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds