Wall clock time and date at job start Wed Apr 1 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 C 1.53006 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47217 * 305.00410 * 4 3 2 6 6 C 1.50692 * 109.47199 * 185.00477 * 4 3 2 7 7 O 1.21284 * 119.99841 * 329.99867 * 6 4 3 8 8 N 1.34778 * 120.00429 * 150.00238 * 6 4 3 9 9 C 1.46494 * 120.00081 * 179.97438 * 8 6 4 10 10 H 1.08993 * 110.56386 * 36.39038 * 9 8 6 11 11 C 1.54854 * 110.62364 * 159.46842 * 9 8 6 12 12 C 1.55846 * 103.44604 * 118.49003 * 11 9 8 13 13 H 1.09007 * 115.55752 * 158.81137 * 12 11 9 14 14 C 1.56236 * 105.83156 * 288.40129 * 12 11 9 15 15 C 1.54860 * 103.25994 * 70.74632 * 14 12 11 16 16 C 1.55850 * 110.62761 * 273.48852 * 9 8 6 17 17 H 1.08997 * 115.56207 * 81.94692 * 16 9 8 18 18 N 1.50233 * 101.75513 * 208.34363 * 16 9 8 19 19 C 1.36939 * 130.84045 * 234.13886 * 18 16 9 20 20 H 1.08009 * 119.99593 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00627 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99295 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00405 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46862 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47293 * 119.99853 * 23 21 19 26 26 H 1.48496 * 109.47132 * 240.00271 * 23 21 19 27 27 S 1.81401 * 109.46914 * 65.00212 * 4 3 2 28 28 N 1.65601 * 104.44978 * 59.99884 * 27 4 3 29 29 O 1.42095 * 110.54090 * 171.62677 * 27 4 3 30 30 O 1.42098 * 110.54224 * 308.37464 * 27 4 3 31 31 H 1.09003 * 109.47010 * 299.99577 * 1 2 3 32 32 H 1.08999 * 109.47237 * 59.99632 * 1 2 3 33 33 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46699 * 239.99985 * 2 1 3 35 35 H 1.09002 * 109.46904 * 120.00764 * 2 1 3 36 36 H 1.09003 * 109.46747 * 60.00262 * 3 2 1 37 37 H 1.08991 * 109.47353 * 300.00020 * 3 2 1 38 38 H 0.97002 * 119.99282 * 359.97438 * 8 6 4 39 39 H 1.09005 * 110.61959 * 236.97597 * 11 9 8 40 40 H 1.08991 * 110.62896 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.74956 * 312.76975 * 14 12 11 42 42 H 1.09004 * 111.68123 * 189.63659 * 14 12 11 43 43 H 1.08996 * 110.62853 * 242.64048 * 15 14 12 44 44 H 1.08997 * 110.62466 * 119.77370 * 15 14 12 45 45 H 0.97005 * 119.99724 * 179.97438 * 22 21 19 46 46 H 0.97002 * 119.99701 * 149.99541 * 28 27 4 47 47 H 0.96996 * 119.99877 * 330.00532 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8530 0.8427 6 6 4.0724 2.8577 0.1246 7 8 3.4171 3.7751 -0.3227 8 7 5.2498 3.1042 0.7324 9 6 5.7383 4.4801 0.8524 10 1 4.9098 5.1668 1.0257 11 6 6.7882 4.5893 1.9854 12 6 8.0770 5.0529 1.2418 13 1 8.8319 5.5334 1.8643 14 6 8.5610 3.8174 0.4171 15 6 7.4972 3.6983 -0.7019 16 6 6.5358 4.8926 -0.4215 17 1 5.9328 5.2197 -1.2685 18 7 7.4933 5.9090 0.1326 19 6 7.7428 7.2022 -0.2426 20 1 7.2007 7.6389 -1.0685 21 6 8.6922 7.9517 0.4382 22 7 9.3523 7.4196 1.4450 23 14 9.0329 9.7154 -0.0741 24 1 8.1653 10.0729 -1.2252 25 1 8.7465 10.6256 1.0637 26 1 10.4582 9.8496 -0.4689 27 16 4.1753 0.7194 -1.5491 28 7 3.5576 1.7004 -2.7317 29 8 5.5827 0.8817 -1.6587 30 8 3.5627 -0.5411 -1.7839 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 5.7737 2.3705 1.0904 39 1 6.4819 5.3318 2.7223 40 1 6.9450 3.6199 2.4583 41 1 8.5558 2.9285 1.0480 42 1 9.5506 3.9808 -0.0097 43 1 6.9644 2.7505 -0.6259 44 1 7.9596 3.8000 -1.6836 45 1 10.0161 7.9432 1.9206 46 1 4.0403 1.8188 -3.5647 47 1 2.7132 2.1566 -2.5913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109560803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:27 Heat of formation + Delta-G solvation = -64.674162 kcal Electronic energy + Delta-G solvation = -30377.335171 eV Core-core repulsion = 26302.606244 eV Total energy + Delta-G solvation = -4074.728927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.28538 -38.60971 -37.55904 -36.25434 -35.67976 -34.12155 -33.28426 -32.37341 -31.14951 -29.23683 -29.03506 -27.58402 -25.25490 -24.04986 -21.75931 -21.51124 -20.96470 -19.75362 -19.54960 -18.60921 -18.22020 -17.95805 -17.03728 -16.78374 -16.38910 -15.92987 -15.44279 -15.08258 -14.81972 -14.50175 -14.15951 -14.12298 -13.96727 -13.76135 -13.08651 -12.73596 -12.45422 -12.39328 -12.37759 -12.31515 -12.28432 -11.81807 -11.75594 -11.49320 -11.33221 -11.29598 -11.01611 -10.94423 -10.89133 -10.83010 -10.56680 -10.50042 -10.16023 -10.07942 -9.96438 -9.78647 -9.42452 -9.21219 -8.96321 -8.63180 -6.91359 -5.73651 -3.09774 -0.15725 2.40317 2.63899 3.01250 3.31920 3.39230 3.45083 3.47108 3.76359 4.18678 4.44822 4.47043 4.56889 4.76333 4.86151 5.15480 5.18450 5.29839 5.37769 5.47704 5.49263 5.52381 5.75263 5.75627 5.82021 5.86685 5.89915 6.01358 6.07870 6.10769 6.15472 6.23156 6.36505 6.50097 6.57271 6.71411 6.80074 6.91123 6.93682 7.05044 7.25392 7.50392 7.52675 7.77263 8.10131 8.16330 9.07667 9.72463 10.53740 11.37634 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.003051 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.188044 B = 9176.196637 C = 9415.728453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.170 4.170 3 C -0.086 4.086 4 C -0.621 4.621 5 H 0.158 0.842 6 C 0.528 3.472 7 O -0.520 6.520 8 N -0.696 5.696 9 C 0.124 3.876 10 H 0.086 0.914 11 C -0.140 4.140 12 C 0.153 3.847 13 H 0.150 0.850 14 C -0.134 4.134 15 C -0.136 4.136 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.591 5.591 19 C -0.208 4.208 20 H 0.080 0.920 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.916 3.084 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 S 2.628 3.372 28 N -1.240 6.240 29 O -0.943 6.943 30 O -0.948 6.948 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.399 0.601 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.422 0.578 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 -16.235 -1.540 21.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C -0.124 4.124 4 C -0.731 4.731 5 H 0.175 0.825 6 C 0.310 3.690 7 O -0.397 6.397 8 N -0.347 5.347 9 C 0.019 3.981 10 H 0.104 0.896 11 C -0.179 4.179 12 C 0.047 3.953 13 H 0.167 0.833 14 C -0.173 4.173 15 C -0.176 4.176 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.312 5.312 19 C -0.336 4.336 20 H 0.098 0.902 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.747 3.253 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 S 2.714 3.286 28 N -0.915 5.915 29 O -0.932 6.932 30 O -0.937 6.937 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.253 0.747 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -13.392 -16.111 -1.809 21.028 hybrid contribution -0.066 1.204 0.226 1.226 sum -13.458 -14.908 -1.583 20.146 Atomic orbital electron populations 1.21694 0.94909 1.01995 1.01960 1.22279 0.97465 0.95521 1.05516 1.21266 0.86866 0.98712 1.05601 1.30729 1.09428 1.07475 1.25452 0.82478 1.19018 0.82005 0.87849 0.80142 1.90740 1.56624 1.44531 1.47769 1.46271 1.20235 1.10884 1.57266 1.22800 0.96687 0.79733 0.98888 0.89613 1.23253 0.98227 0.99902 0.96558 1.24018 0.93659 0.87835 0.89769 0.83260 1.23051 0.98532 0.98237 0.97495 1.23004 0.97706 0.98273 0.98579 1.23170 0.91285 0.89889 0.93780 0.89769 1.46829 1.41438 1.09063 1.33860 1.19097 1.16848 0.85651 1.11959 0.90237 1.24695 0.99156 0.98556 0.98391 1.69500 1.28484 1.35686 1.23471 0.85971 0.77669 0.84131 0.77577 1.20563 1.21841 1.21827 1.04575 0.74195 0.74362 0.75420 1.53000 1.36606 1.69060 1.32833 1.93661 1.29137 1.85959 1.84475 1.93564 1.77571 1.39705 1.82816 0.92764 0.92453 0.92297 0.87543 0.91292 0.89317 0.89986 0.76658 0.91354 0.92467 0.93807 0.92460 0.91622 0.93026 0.93666 0.74701 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.17 -1.31 5.65 -26.73 -0.15 -1.46 16 3 C -0.09 -0.71 4.15 -26.73 -0.11 -0.82 16 4 C -0.62 -5.74 2.83 -27.88 -0.08 -5.81 16 5 H 0.16 0.97 8.14 -51.92 -0.42 0.54 16 6 C 0.53 6.94 6.71 -10.99 -0.07 6.87 16 7 O -0.52 -8.28 15.99 5.55 0.09 -8.20 16 8 N -0.70 -9.68 3.64 -51.40 -0.19 -9.87 16 9 C 0.12 2.23 3.09 -65.43 -0.20 2.03 16 10 H 0.09 1.68 7.68 -51.93 -0.40 1.28 16 11 C -0.14 -2.56 6.23 -24.23 -0.15 -2.71 16 12 C 0.15 3.41 4.74 -61.68 -0.29 3.12 16 13 H 0.15 3.80 5.64 -51.92 -0.29 3.51 16 14 C -0.13 -2.64 6.50 -24.01 -0.16 -2.80 16 15 C -0.14 -2.62 6.32 -24.23 -0.15 -2.77 16 16 C 0.13 2.66 5.30 -62.80 -0.33 2.33 16 17 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 18 N -0.59 -14.61 3.05 -144.36 -0.44 -15.05 16 19 C -0.21 -5.69 10.59 -15.06 -0.16 -5.85 16 20 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.92 -26.09 10.56 55.49 0.59 -25.50 16 23 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 S 2.63 27.04 5.46 -107.50 -0.59 26.45 16 28 N -1.24 -10.80 9.22 60.35 0.56 -10.25 16 29 O -0.94 -12.87 17.27 -57.54 -0.99 -13.86 16 30 O -0.95 -11.02 14.89 -57.54 -0.86 -11.88 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.11 0.94 4.90 -51.93 -0.25 0.68 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.63 6.57 -51.93 -0.34 0.29 16 38 H 0.40 4.61 7.99 -40.82 -0.33 4.28 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 41 H 0.04 0.73 7.85 -51.93 -0.41 0.32 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.13 5.68 -51.93 -0.30 0.83 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.42 3.23 8.96 -34.47 -0.31 2.92 16 47 H 0.42 3.04 7.47 -34.47 -0.26 2.79 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -34.04 376.17 -9.82 -43.86 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.04 Total: 10.67 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -1.59 Total: -8.97 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.52 Total: -60.67 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.76 Total: -33.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 27.04 SS G_CDS: -0.59 Total: 26.45 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.04 -9.82 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109560803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.817 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds