Wall clock time and date at job start Wed Apr 1 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 C 1.53006 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47217 * 305.00410 * 4 3 2 6 6 C 1.50692 * 109.47199 * 185.00477 * 4 3 2 7 7 O 1.21284 * 119.99841 * 329.99867 * 6 4 3 8 8 N 1.34778 * 120.00429 * 150.00238 * 6 4 3 9 9 C 1.46494 * 120.00081 * 179.97438 * 8 6 4 10 10 H 1.08993 * 110.56386 * 36.39038 * 9 8 6 11 11 C 1.54854 * 110.62364 * 159.46842 * 9 8 6 12 12 C 1.55846 * 103.44604 * 118.49003 * 11 9 8 13 13 H 1.09007 * 115.55752 * 158.81137 * 12 11 9 14 14 C 1.56236 * 105.83156 * 288.40129 * 12 11 9 15 15 C 1.54860 * 103.25994 * 70.74632 * 14 12 11 16 16 C 1.55850 * 110.62761 * 273.48852 * 9 8 6 17 17 H 1.08997 * 115.56207 * 81.94692 * 16 9 8 18 18 N 1.50233 * 101.75513 * 208.34363 * 16 9 8 19 19 C 1.36939 * 130.84045 * 234.13886 * 18 16 9 20 20 H 1.08009 * 119.99593 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00627 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99295 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00405 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46862 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47293 * 119.99853 * 23 21 19 26 26 H 1.48496 * 109.47132 * 240.00271 * 23 21 19 27 27 S 1.81401 * 109.46914 * 65.00212 * 4 3 2 28 28 N 1.65601 * 104.44978 * 59.99884 * 27 4 3 29 29 O 1.42095 * 110.54090 * 171.62677 * 27 4 3 30 30 O 1.42098 * 110.54224 * 308.37464 * 27 4 3 31 31 H 1.09003 * 109.47010 * 299.99577 * 1 2 3 32 32 H 1.08999 * 109.47237 * 59.99632 * 1 2 3 33 33 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46699 * 239.99985 * 2 1 3 35 35 H 1.09002 * 109.46904 * 120.00764 * 2 1 3 36 36 H 1.09003 * 109.46747 * 60.00262 * 3 2 1 37 37 H 1.08991 * 109.47353 * 300.00020 * 3 2 1 38 38 H 0.97002 * 119.99282 * 359.97438 * 8 6 4 39 39 H 1.09005 * 110.61959 * 236.97597 * 11 9 8 40 40 H 1.08991 * 110.62896 * 359.97438 * 11 9 8 41 41 H 1.08998 * 109.74956 * 312.76975 * 14 12 11 42 42 H 1.09004 * 111.68123 * 189.63659 * 14 12 11 43 43 H 1.08996 * 110.62853 * 242.64048 * 15 14 12 44 44 H 1.08997 * 110.62466 * 119.77370 * 15 14 12 45 45 H 0.97005 * 119.99724 * 179.97438 * 22 21 19 46 46 H 0.97002 * 119.99701 * 149.99541 * 28 27 4 47 47 H 0.96996 * 119.99877 * 330.00532 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9331 0.8530 0.8427 6 6 4.0724 2.8577 0.1246 7 8 3.4171 3.7751 -0.3227 8 7 5.2498 3.1042 0.7324 9 6 5.7383 4.4801 0.8524 10 1 4.9098 5.1668 1.0257 11 6 6.7882 4.5893 1.9854 12 6 8.0770 5.0529 1.2418 13 1 8.8319 5.5334 1.8643 14 6 8.5610 3.8174 0.4171 15 6 7.4972 3.6983 -0.7019 16 6 6.5358 4.8926 -0.4215 17 1 5.9328 5.2197 -1.2685 18 7 7.4933 5.9090 0.1326 19 6 7.7428 7.2022 -0.2426 20 1 7.2007 7.6389 -1.0685 21 6 8.6922 7.9517 0.4382 22 7 9.3523 7.4196 1.4450 23 14 9.0329 9.7154 -0.0741 24 1 8.1653 10.0729 -1.2252 25 1 8.7465 10.6256 1.0637 26 1 10.4582 9.8496 -0.4689 27 16 4.1753 0.7194 -1.5491 28 7 3.5576 1.7004 -2.7317 29 8 5.5827 0.8817 -1.6587 30 8 3.5627 -0.5411 -1.7839 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5140 0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6767 1.9563 -0.8899 38 1 5.7737 2.3705 1.0904 39 1 6.4819 5.3318 2.7223 40 1 6.9450 3.6199 2.4583 41 1 8.5558 2.9285 1.0480 42 1 9.5506 3.9808 -0.0097 43 1 6.9644 2.7505 -0.6259 44 1 7.9596 3.8000 -1.6836 45 1 10.0161 7.9432 1.9206 46 1 4.0403 1.8188 -3.5647 47 1 2.7132 2.1566 -2.5913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109560803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:25 Heat of formation + Delta-G solvation = -90.593928 kcal Electronic energy + Delta-G solvation = -30378.459136 eV Core-core repulsion = 26302.606244 eV Total energy + Delta-G solvation = -4075.852892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.58276 -40.00651 -38.43434 -37.15356 -36.42520 -35.52413 -34.24734 -34.00975 -31.97348 -30.96189 -30.64463 -29.11457 -26.40420 -25.60634 -22.95071 -22.34734 -22.21824 -21.29879 -20.53040 -20.10856 -19.19095 -18.95593 -18.64451 -17.79906 -17.25244 -16.99838 -16.81374 -16.40230 -16.31668 -15.83617 -15.41278 -15.28016 -15.00327 -14.75218 -14.12717 -13.94363 -13.73713 -13.50545 -13.41791 -13.28191 -13.25179 -13.21063 -13.12549 -12.87392 -12.78954 -12.59901 -12.45279 -12.37788 -12.00664 -11.96074 -11.89735 -11.83169 -11.56036 -11.29382 -11.26386 -11.13637 -11.02363 -10.86394 -10.82456 -10.05904 -8.85172 -7.79788 -5.16952 -0.98390 1.43083 1.46911 1.47442 1.56745 1.71219 2.00766 2.49620 2.52609 2.95276 3.33103 3.36958 3.52727 3.67212 3.87982 3.93951 4.07747 4.14488 4.18105 4.24361 4.43429 4.48361 4.59160 4.60799 4.70688 4.72694 4.82654 4.90082 4.96599 4.98045 5.13704 5.15197 5.18681 5.20326 5.29283 5.34050 5.37209 5.46593 5.53471 5.54154 5.71819 5.88547 6.23505 6.28046 6.43459 7.02452 7.08380 7.68921 8.56668 9.29244 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.003051 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.188044 B = 9176.196637 C = 9415.728453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.170 4.170 3 C -0.088 4.088 4 C -0.607 4.607 5 H 0.196 0.804 6 C 0.528 3.472 7 O -0.548 6.548 8 N -0.692 5.692 9 C 0.145 3.855 10 H 0.067 0.933 11 C -0.126 4.126 12 C 0.138 3.862 13 H 0.117 0.883 14 C -0.126 4.126 15 C -0.125 4.125 16 C 0.120 3.880 17 H 0.070 0.930 18 N -0.619 5.619 19 C -0.220 4.220 20 H 0.073 0.927 21 C -0.064 4.064 22 N -0.944 5.944 23 Si 0.974 3.026 24 H -0.273 1.273 25 H -0.292 1.292 26 H -0.294 1.294 27 S 2.642 3.358 28 N -1.238 6.238 29 O -0.976 6.976 30 O -0.960 6.960 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.414 0.586 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.092 0.908 44 H 0.035 0.965 45 H 0.248 0.752 46 H 0.427 0.573 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 -18.198 -1.005 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C -0.126 4.126 4 C -0.718 4.718 5 H 0.213 0.787 6 C 0.312 3.688 7 O -0.425 6.425 8 N -0.344 5.344 9 C 0.038 3.962 10 H 0.085 0.915 11 C -0.165 4.165 12 C 0.033 3.967 13 H 0.134 0.866 14 C -0.165 4.165 15 C -0.164 4.164 16 C 0.011 3.989 17 H 0.088 0.912 18 N -0.342 5.342 19 C -0.349 4.349 20 H 0.091 0.909 21 C -0.257 4.257 22 N -0.594 5.594 23 Si 0.804 3.196 24 H -0.198 1.198 25 H -0.219 1.219 26 H -0.221 1.221 27 S 2.730 3.270 28 N -0.916 5.916 29 O -0.966 6.966 30 O -0.949 6.949 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.252 0.748 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.111 0.889 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.259 0.741 47 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -14.773 -18.134 -1.294 23.425 hybrid contribution 0.272 1.782 0.018 1.802 sum -14.501 -16.352 -1.277 21.893 Atomic orbital electron populations 1.21734 0.94386 1.02479 1.02324 1.22270 0.97998 0.94841 1.05624 1.21349 0.85905 0.99378 1.06007 1.30681 1.10132 1.04800 1.26195 0.78701 1.19523 0.81227 0.89155 0.78884 1.90742 1.57241 1.46044 1.48518 1.46054 1.20882 1.09588 1.57886 1.22195 0.95533 0.81678 0.96806 0.91484 1.23090 0.95896 1.01536 0.95988 1.23956 0.94759 0.88247 0.89721 0.86582 1.22973 0.97262 0.98637 0.97619 1.22925 0.97193 0.98671 0.97620 1.23304 0.91408 0.89526 0.94622 0.91159 1.47076 1.42960 1.08974 1.35162 1.19330 1.16610 0.87281 1.11706 0.90932 1.25399 0.99500 1.01908 0.98898 1.69718 1.28895 1.36521 1.24280 0.85055 0.77148 0.80155 0.77248 1.19782 1.21910 1.22077 1.03993 0.73281 0.74137 0.75562 1.52901 1.36965 1.68924 1.32820 1.93619 1.31312 1.86479 1.85149 1.93564 1.77521 1.40650 1.83121 0.92288 0.92297 0.91800 0.88578 0.90019 0.89029 0.89675 0.74767 0.92727 0.88282 0.89833 0.94708 0.88931 0.94576 0.94240 0.74129 0.74662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.17 -2.11 5.65 30.59 0.17 -1.94 16 3 C -0.09 -1.19 4.15 30.60 0.13 -1.07 16 4 C -0.61 -9.23 2.83 29.85 0.08 -9.14 16 5 H 0.20 1.46 8.14 -2.39 -0.02 1.44 16 6 C 0.53 12.51 6.71 87.65 0.59 13.10 16 7 O -0.55 -16.55 15.99 -3.04 -0.05 -16.60 16 8 N -0.69 -17.21 3.64 -434.92 -1.58 -18.79 16 9 C 0.14 4.99 3.09 46.61 0.14 5.14 16 10 H 0.07 2.60 7.68 -2.39 -0.02 2.58 16 11 C -0.13 -4.40 6.23 32.21 0.20 -4.20 16 12 C 0.14 6.17 4.74 46.05 0.22 6.39 16 13 H 0.12 6.05 5.64 -2.38 -0.01 6.04 16 14 C -0.13 -4.80 6.50 32.35 0.21 -4.59 16 15 C -0.12 -4.65 6.32 32.22 0.20 -4.45 16 16 C 0.12 4.96 5.30 46.23 0.25 5.20 16 17 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 18 N -0.62 -31.21 3.05 -610.64 -1.86 -33.08 16 19 C -0.22 -12.41 10.59 84.03 0.89 -11.52 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 22 N -0.94 -54.86 10.56 21.65 0.23 -54.63 16 23 Si 0.97 46.12 29.55 68.60 2.03 48.14 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 27 S 2.64 48.21 5.46 -56.49 -0.31 47.90 16 28 N -1.24 -19.62 9.22 37.02 0.34 -19.28 16 29 O -0.98 -24.46 17.27 -127.65 -2.20 -26.67 16 30 O -0.96 -20.16 14.89 -127.65 -1.90 -22.06 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 1.45 4.90 -2.38 -0.01 1.44 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.10 6.57 -2.39 -0.02 1.09 16 38 H 0.41 7.76 7.99 -92.71 -0.74 7.02 16 39 H 0.05 2.06 8.14 -2.38 -0.02 2.05 16 40 H 0.10 2.61 7.39 -2.39 -0.02 2.59 16 41 H 0.08 2.51 7.85 -2.39 -0.02 2.49 16 42 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.09 2.93 5.68 -2.39 -0.01 2.92 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 46 H 0.43 6.02 8.96 -96.74 -0.87 5.15 16 47 H 0.42 5.52 7.47 -96.75 -0.72 4.79 16 Total: -1.00 -75.29 376.17 -2.35 -77.65 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -1.31 Total: 28.65 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.26 Total: -11.22 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -2.88 Total: -125.78 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -4.15 Total: -65.33 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 48.21 SS G_CDS: -0.31 Total: 47.90 kcal Total: -75.29 -2.35 -77.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109560803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.949 kcal (2) G-P(sol) polarization free energy of solvation -75.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds