Wall clock time and date at job start Wed Apr 1 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 C 1.52997 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47414 * 54.99996 * 4 3 2 6 6 C 1.50700 * 109.46942 * 174.99825 * 4 3 2 7 7 O 1.21280 * 120.00187 * 34.99772 * 6 4 3 8 8 N 1.34782 * 119.99838 * 214.99860 * 6 4 3 9 9 C 1.46501 * 119.99844 * 179.97438 * 8 6 4 10 10 H 1.09002 * 110.55745 * 36.97374 * 9 8 6 11 11 C 1.54854 * 110.76232 * 159.97092 * 9 8 6 12 12 C 1.55841 * 103.44534 * 118.55495 * 11 9 8 13 13 H 1.08998 * 116.12594 * 159.14905 * 12 11 9 14 14 C 1.55846 * 105.06459 * 288.17538 * 12 11 9 15 15 C 1.54854 * 103.44538 * 71.82465 * 14 12 11 16 16 C 1.55839 * 103.44247 * 0.02562 * 15 14 12 17 17 H 1.09007 * 115.55678 * 159.56582 * 16 15 14 18 18 N 1.50233 * 101.05236 * 32.93950 * 12 11 9 19 19 C 1.36932 * 130.83936 * 126.05358 * 18 12 11 20 20 H 1.08005 * 120.00215 * 179.97438 * 19 18 12 21 21 C 1.38814 * 120.00209 * 359.96802 * 19 18 12 22 22 N 1.31618 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47316 * 60.00345 * 23 21 19 25 25 H 1.48493 * 109.47192 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46932 * 300.00309 * 23 21 19 27 27 S 1.81399 * 109.46992 * 294.99537 * 4 3 2 28 28 N 1.65599 * 104.44963 * 300.00221 * 27 4 3 29 29 O 1.42101 * 110.54355 * 51.62778 * 27 4 3 30 30 O 1.42104 * 110.53995 * 188.37746 * 27 4 3 31 31 H 1.08999 * 109.46990 * 60.00728 * 1 2 3 32 32 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00171 * 1 2 3 34 34 H 1.08999 * 109.47018 * 239.99062 * 2 1 3 35 35 H 1.09000 * 109.46512 * 119.99499 * 2 1 3 36 36 H 1.09000 * 109.47439 * 59.99340 * 3 2 1 37 37 H 1.09009 * 109.46639 * 299.99728 * 3 2 1 38 38 H 0.96999 * 119.99719 * 0.02562 * 8 6 4 39 39 H 1.09002 * 110.62524 * 237.04764 * 11 9 8 40 40 H 1.09002 * 110.62404 * 0.06291 * 11 9 8 41 41 H 1.09005 * 110.62579 * 313.33722 * 14 12 11 42 42 H 1.09002 * 110.62676 * 190.31679 * 14 12 11 43 43 H 1.08996 * 110.62570 * 241.51068 * 15 14 12 44 44 H 1.09005 * 110.75946 * 118.55485 * 15 14 12 45 45 H 0.97002 * 119.99382 * 179.97438 * 22 21 19 46 46 H 0.96993 * 120.00070 * 0.02562 * 28 27 4 47 47 H 0.97003 * 119.99632 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 6 4.0724 2.8578 -0.1232 7 8 3.4632 3.7657 0.4016 8 7 5.1988 3.1147 -0.8173 9 6 5.6869 4.4908 -0.9382 10 1 5.5161 5.0402 -0.0124 11 6 7.1889 4.5094 -1.3146 12 6 7.2086 5.2395 -2.6912 13 1 8.1609 5.6790 -2.9879 14 6 6.5952 4.2209 -3.6987 15 6 5.0932 4.2023 -3.3224 16 6 5.0036 5.2126 -2.1393 17 1 4.0113 5.6183 -1.9415 18 7 6.0669 6.2015 -2.5233 19 6 6.0122 7.5613 -2.6746 20 1 5.0834 8.0864 -2.5072 21 6 7.1506 8.2651 -3.0431 22 7 8.2824 7.6252 -3.2475 23 14 7.0761 10.1202 -3.2488 24 1 6.6683 10.7447 -1.9647 25 1 8.4141 10.6286 -3.6440 26 1 6.0863 10.4621 -4.3018 27 16 4.1740 0.7200 1.5511 28 7 3.5552 1.7013 2.7328 29 8 3.5613 -0.5405 1.7859 30 8 5.5813 0.8825 1.6619 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.6767 1.9563 -0.8901 38 1 5.6859 2.3886 -1.2374 39 1 7.7631 5.0680 -0.5753 40 1 7.5727 3.4939 -1.4129 41 1 7.0371 3.2336 -3.5636 42 1 6.7300 4.5661 -4.7238 43 1 4.7902 3.2059 -3.0007 44 1 4.4809 4.5369 -4.1599 45 1 9.0778 8.1170 -3.5053 46 1 3.0041 2.4622 2.4920 47 1 3.7441 1.5151 3.6659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109560804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:31 Heat of formation + Delta-G solvation = -65.998747 kcal Electronic energy + Delta-G solvation = -30121.127131 eV Core-core repulsion = 26046.340766 eV Total energy + Delta-G solvation = -4074.786365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.36391 -38.73802 -37.57247 -36.27815 -35.67812 -34.19687 -33.29457 -32.43645 -31.16597 -29.34151 -29.07005 -27.67986 -25.26320 -24.12074 -21.73686 -21.59215 -21.01423 -19.76787 -19.60568 -18.70695 -18.29142 -17.96000 -17.14014 -16.78240 -16.25735 -15.99602 -15.53504 -15.09339 -14.87193 -14.64665 -14.23618 -14.02930 -13.98248 -13.83953 -13.12058 -12.74151 -12.45516 -12.44411 -12.40396 -12.34555 -12.31958 -11.86905 -11.76704 -11.54805 -11.31584 -11.26207 -11.11039 -10.97338 -10.95409 -10.86579 -10.60424 -10.51226 -10.28784 -10.16256 -10.02970 -9.85402 -9.48892 -9.32014 -8.97515 -8.66998 -6.97376 -5.76920 -3.15439 -0.20191 2.38706 2.54662 2.99239 3.24356 3.38001 3.42272 3.43116 3.76594 4.17779 4.42100 4.49516 4.57771 4.78004 4.86515 5.12663 5.18192 5.32080 5.33154 5.47672 5.51618 5.55770 5.71258 5.77588 5.77912 5.85431 5.89343 5.92215 5.98705 6.06061 6.13040 6.19703 6.25881 6.46487 6.49362 6.57112 6.72826 6.85967 6.88041 6.91870 7.20049 7.46347 7.48710 7.74384 8.07599 8.14316 9.05848 9.68606 10.47976 11.32572 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.002932 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.869421 B = 9547.459315 C = 9851.987499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.169 4.169 3 C -0.086 4.086 4 C -0.615 4.615 5 H 0.159 0.841 6 C 0.527 3.473 7 O -0.524 6.524 8 N -0.693 5.693 9 C 0.124 3.876 10 H 0.087 0.913 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.156 0.844 14 C -0.138 4.138 15 C -0.132 4.132 16 C 0.130 3.870 17 H 0.087 0.913 18 N -0.588 5.588 19 C -0.213 4.213 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 S 2.629 3.371 28 N -1.244 6.244 29 O -0.950 6.950 30 O -0.950 6.950 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.399 0.601 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.255 0.745 46 H 0.421 0.579 47 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 -16.524 6.885 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.206 4.206 3 C -0.125 4.125 4 C -0.726 4.726 5 H 0.177 0.823 6 C 0.309 3.691 7 O -0.401 6.401 8 N -0.343 5.343 9 C 0.019 3.981 10 H 0.105 0.895 11 C -0.181 4.181 12 C 0.047 3.953 13 H 0.173 0.827 14 C -0.178 4.178 15 C -0.172 4.172 16 C 0.020 3.980 17 H 0.105 0.895 18 N -0.308 5.308 19 C -0.341 4.341 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 S 2.717 3.283 28 N -0.922 5.922 29 O -0.939 6.939 30 O -0.939 6.939 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.234 0.766 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.250 0.750 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -9.962 -16.408 7.138 20.480 hybrid contribution -0.327 1.181 -0.599 1.364 sum -10.290 -15.227 6.539 19.506 Atomic orbital electron populations 1.21691 0.94914 1.01957 1.01972 1.22258 0.97463 0.95460 1.05438 1.21295 0.86510 0.98952 1.05760 1.30643 1.09673 1.07335 1.24926 0.82291 1.19065 0.81809 0.87724 0.80501 1.90737 1.56513 1.45214 1.47634 1.46268 1.25111 1.11206 1.51701 1.22834 0.95611 0.79183 1.00502 0.89507 1.23308 0.93041 0.99776 1.02001 1.23793 0.95990 0.86254 0.89247 0.82710 1.23071 0.95226 0.98470 1.01013 1.22939 0.97330 0.97986 0.98935 1.23169 0.93274 0.89560 0.91962 0.89536 1.46447 1.04946 1.01646 1.77768 1.19009 0.95857 0.80091 1.39169 0.90332 1.24704 0.95434 0.98241 1.02209 1.69420 1.00166 1.33877 1.53609 0.86096 0.76640 0.84508 0.77924 1.21164 1.21551 1.21249 1.04478 0.74341 0.74047 0.75443 1.52957 1.70878 1.46748 1.21569 1.93551 1.77154 1.40256 1.82938 1.93651 1.30050 1.85866 1.84372 0.92729 0.92335 0.92477 0.91316 0.87559 0.89734 0.89204 0.76630 0.91246 0.92402 0.93551 0.92555 0.93274 0.92973 0.93431 0.74982 0.75001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.17 -1.34 5.65 -26.73 -0.15 -1.49 16 3 C -0.09 -0.74 4.21 -26.73 -0.11 -0.85 16 4 C -0.62 -5.74 2.75 -27.88 -0.08 -5.82 16 5 H 0.16 1.00 8.11 -51.92 -0.42 0.58 16 6 C 0.53 6.92 6.58 -10.98 -0.07 6.85 16 7 O -0.52 -8.20 15.23 5.56 0.08 -8.12 16 8 N -0.69 -9.65 3.64 -51.36 -0.19 -9.83 16 9 C 0.12 2.22 3.07 -65.40 -0.20 2.02 16 10 H 0.09 1.72 7.70 -51.93 -0.40 1.32 16 11 C -0.14 -2.64 6.21 -24.24 -0.15 -2.79 16 12 C 0.15 3.38 4.72 -62.81 -0.30 3.08 16 13 H 0.16 3.91 5.52 -51.93 -0.29 3.62 16 14 C -0.14 -2.58 6.44 -24.23 -0.16 -2.74 16 15 C -0.13 -2.33 6.33 -24.24 -0.15 -2.48 16 16 C 0.13 2.60 5.35 -62.79 -0.34 2.26 16 17 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 18 N -0.59 -14.25 2.98 -145.81 -0.44 -14.68 16 19 C -0.21 -5.76 10.59 -15.06 -0.16 -5.92 16 20 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.92 -25.74 10.47 55.49 0.58 -25.16 16 23 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 S 2.63 26.94 5.46 -107.50 -0.59 26.35 16 28 N -1.24 -10.73 9.13 60.35 0.55 -10.18 16 29 O -0.95 -10.89 14.89 -57.54 -0.86 -11.75 16 30 O -0.95 -13.12 18.01 -57.54 -1.04 -14.15 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.96 4.90 -51.93 -0.25 0.70 16 36 H 0.08 0.67 6.96 -51.93 -0.36 0.31 16 37 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.40 4.59 8.00 -40.82 -0.33 4.26 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 0.91 7.35 -51.93 -0.38 0.53 16 41 H 0.05 0.73 7.82 -51.93 -0.41 0.32 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.72 6.48 -51.93 -0.34 0.38 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 46 H 0.42 3.48 6.95 -34.47 -0.24 3.24 16 47 H 0.42 2.85 8.96 -34.47 -0.31 2.54 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -33.36 376.16 -9.91 -43.27 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -7.07 Total: 10.86 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.59 Total: -8.94 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.51 Total: -59.85 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.81 Total: -34.01 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 26.94 SS G_CDS: -0.59 Total: 26.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.36 -9.91 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109560804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.733 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds