Wall clock time and date at job start Wed Apr 1 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47204 * 2 1 4 4 C 1.52997 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47414 * 54.99996 * 4 3 2 6 6 C 1.50700 * 109.46942 * 174.99825 * 4 3 2 7 7 O 1.21280 * 120.00187 * 34.99772 * 6 4 3 8 8 N 1.34782 * 119.99838 * 214.99860 * 6 4 3 9 9 C 1.46501 * 119.99844 * 179.97438 * 8 6 4 10 10 H 1.09002 * 110.55745 * 36.97374 * 9 8 6 11 11 C 1.54854 * 110.76232 * 159.97092 * 9 8 6 12 12 C 1.55841 * 103.44534 * 118.55495 * 11 9 8 13 13 H 1.08998 * 116.12594 * 159.14905 * 12 11 9 14 14 C 1.55846 * 105.06459 * 288.17538 * 12 11 9 15 15 C 1.54854 * 103.44538 * 71.82465 * 14 12 11 16 16 C 1.55839 * 103.44247 * 0.02562 * 15 14 12 17 17 H 1.09007 * 115.55678 * 159.56582 * 16 15 14 18 18 N 1.50233 * 101.05236 * 32.93950 * 12 11 9 19 19 C 1.36932 * 130.83936 * 126.05358 * 18 12 11 20 20 H 1.08005 * 120.00215 * 179.97438 * 19 18 12 21 21 C 1.38814 * 120.00209 * 359.96802 * 19 18 12 22 22 N 1.31618 * 119.99582 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47316 * 60.00345 * 23 21 19 25 25 H 1.48493 * 109.47192 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46932 * 300.00309 * 23 21 19 27 27 S 1.81399 * 109.46992 * 294.99537 * 4 3 2 28 28 N 1.65599 * 104.44963 * 300.00221 * 27 4 3 29 29 O 1.42101 * 110.54355 * 51.62778 * 27 4 3 30 30 O 1.42104 * 110.53995 * 188.37746 * 27 4 3 31 31 H 1.08999 * 109.46990 * 60.00728 * 1 2 3 32 32 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00171 * 1 2 3 34 34 H 1.08999 * 109.47018 * 239.99062 * 2 1 3 35 35 H 1.09000 * 109.46512 * 119.99499 * 2 1 3 36 36 H 1.09000 * 109.47439 * 59.99340 * 3 2 1 37 37 H 1.09009 * 109.46639 * 299.99728 * 3 2 1 38 38 H 0.96999 * 119.99719 * 0.02562 * 8 6 4 39 39 H 1.09002 * 110.62524 * 237.04764 * 11 9 8 40 40 H 1.09002 * 110.62404 * 0.06291 * 11 9 8 41 41 H 1.09005 * 110.62579 * 313.33722 * 14 12 11 42 42 H 1.09002 * 110.62676 * 190.31679 * 14 12 11 43 43 H 1.08996 * 110.62570 * 241.51068 * 15 14 12 44 44 H 1.09005 * 110.75946 * 118.55485 * 15 14 12 45 45 H 0.97002 * 119.99382 * 179.97438 * 22 21 19 46 46 H 0.96993 * 120.00070 * 0.02562 * 28 27 4 47 47 H 0.97003 * 119.99632 * 180.02562 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8528 -0.8409 6 6 4.0724 2.8578 -0.1232 7 8 3.4632 3.7657 0.4016 8 7 5.1988 3.1147 -0.8173 9 6 5.6869 4.4908 -0.9382 10 1 5.5161 5.0402 -0.0124 11 6 7.1889 4.5094 -1.3146 12 6 7.2086 5.2395 -2.6912 13 1 8.1609 5.6790 -2.9879 14 6 6.5952 4.2209 -3.6987 15 6 5.0932 4.2023 -3.3224 16 6 5.0036 5.2126 -2.1393 17 1 4.0113 5.6183 -1.9415 18 7 6.0669 6.2015 -2.5233 19 6 6.0122 7.5613 -2.6746 20 1 5.0834 8.0864 -2.5072 21 6 7.1506 8.2651 -3.0431 22 7 8.2824 7.6252 -3.2475 23 14 7.0761 10.1202 -3.2488 24 1 6.6683 10.7447 -1.9647 25 1 8.4141 10.6286 -3.6440 26 1 6.0863 10.4621 -4.3018 27 16 4.1740 0.7200 1.5511 28 7 3.5552 1.7013 2.7328 29 8 3.5613 -0.5405 1.7859 30 8 5.5813 0.8825 1.6619 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.6767 1.9563 -0.8901 38 1 5.6859 2.3886 -1.2374 39 1 7.7631 5.0680 -0.5753 40 1 7.5727 3.4939 -1.4129 41 1 7.0371 3.2336 -3.5636 42 1 6.7300 4.5661 -4.7238 43 1 4.7902 3.2059 -3.0007 44 1 4.4809 4.5369 -4.1599 45 1 9.0778 8.1170 -3.5053 46 1 3.0041 2.4622 2.4920 47 1 3.7441 1.5151 3.6659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109560804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:30 Heat of formation + Delta-G solvation = -91.305904 kcal Electronic energy + Delta-G solvation = -30122.224531 eV Core-core repulsion = 26046.340766 eV Total energy + Delta-G solvation = -4075.883766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.65194 -40.09922 -38.43926 -37.17556 -36.43116 -35.57776 -34.27517 -34.01416 -31.99167 -31.00767 -30.64995 -29.16207 -26.41815 -25.63705 -22.97202 -22.36868 -22.24208 -21.28784 -20.58160 -20.16282 -19.13885 -19.07486 -18.66672 -17.81398 -17.23648 -16.84004 -16.80284 -16.60972 -16.33055 -15.87038 -15.49855 -15.27592 -15.00725 -14.74284 -14.10058 -14.03237 -13.73654 -13.48564 -13.46748 -13.28400 -13.27455 -13.23022 -13.13549 -12.88456 -12.78749 -12.62620 -12.45567 -12.38694 -12.02842 -11.96549 -11.91691 -11.88473 -11.57693 -11.33205 -11.31156 -11.14147 -11.05859 -10.90566 -10.79586 -10.07155 -8.87001 -7.79478 -5.18981 -1.02382 1.39153 1.46912 1.49015 1.54833 1.66101 1.98700 2.45228 2.49556 2.94878 3.31191 3.35743 3.53820 3.68867 3.87073 3.94510 4.08748 4.13882 4.16687 4.24730 4.40197 4.46379 4.59203 4.60000 4.70948 4.73351 4.78692 4.91713 4.96354 4.98780 5.06611 5.15033 5.15454 5.19156 5.28614 5.31910 5.37774 5.45176 5.52043 5.54503 5.70995 5.88622 6.24704 6.26538 6.40646 7.02030 7.06904 7.69460 8.54841 9.27196 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019869 B = 0.002932 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.869421 B = 9547.459315 C = 9851.987499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.168 4.168 3 C -0.088 4.088 4 C -0.601 4.601 5 H 0.198 0.802 6 C 0.527 3.473 7 O -0.549 6.549 8 N -0.689 5.689 9 C 0.143 3.857 10 H 0.063 0.937 11 C -0.130 4.130 12 C 0.137 3.863 13 H 0.120 0.880 14 C -0.128 4.128 15 C -0.119 4.119 16 C 0.122 3.878 17 H 0.074 0.926 18 N -0.617 5.617 19 C -0.226 4.226 20 H 0.073 0.927 21 C -0.063 4.063 22 N -0.944 5.944 23 Si 0.975 3.025 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.281 1.281 27 S 2.644 3.356 28 N -1.242 6.242 29 O -0.961 6.961 30 O -0.986 6.986 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.415 0.585 39 H 0.047 0.953 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.035 0.965 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.249 0.751 46 H 0.424 0.576 47 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 -18.755 6.768 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.206 4.206 3 C -0.127 4.127 4 C -0.713 4.713 5 H 0.215 0.785 6 C 0.310 3.690 7 O -0.427 6.427 8 N -0.341 5.341 9 C 0.036 3.964 10 H 0.081 0.919 11 C -0.170 4.170 12 C 0.031 3.969 13 H 0.137 0.863 14 C -0.167 4.167 15 C -0.158 4.158 16 C 0.014 3.986 17 H 0.092 0.908 18 N -0.338 5.338 19 C -0.355 4.355 20 H 0.091 0.909 21 C -0.256 4.256 22 N -0.593 5.593 23 Si 0.804 3.196 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.208 1.208 27 S 2.733 3.267 28 N -0.921 5.921 29 O -0.950 6.950 30 O -0.975 6.975 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.253 0.747 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.254 0.746 47 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -11.215 -18.702 7.049 22.918 hybrid contribution -0.034 1.854 -0.514 1.925 sum -11.249 -16.848 6.535 21.286 Atomic orbital electron populations 1.21729 0.94479 1.02439 1.02245 1.22254 0.97916 0.94811 1.05613 1.21373 0.85640 0.99588 1.06095 1.30595 1.10248 1.04730 1.25685 0.78501 1.19566 0.81005 0.89024 0.79387 1.90741 1.57084 1.46667 1.48254 1.46044 1.25708 1.09868 1.52472 1.22238 0.94763 0.81063 0.98315 0.91915 1.23151 0.93472 1.01003 0.99352 1.23693 0.94354 0.86892 0.91957 0.86263 1.22967 0.95819 0.99263 0.98682 1.22854 0.96460 0.99128 0.97367 1.23310 0.91998 0.89424 0.93871 0.90760 1.46699 1.07126 1.01490 1.78528 1.19273 0.95697 0.82064 1.38426 0.90874 1.25411 0.95376 1.01839 1.02929 1.69664 1.00311 1.34686 1.54683 0.85194 0.76283 0.80308 0.77783 1.20898 1.21846 1.20780 1.03892 0.73424 0.73818 0.75589 1.52841 1.70640 1.46645 1.21957 1.93550 1.77079 1.41116 1.83216 1.93617 1.32394 1.86422 1.85072 0.92345 0.91797 0.92407 0.89988 0.88519 0.89529 0.88946 0.74687 0.93399 0.88730 0.89556 0.94651 0.89259 0.93793 0.94163 0.74638 0.74057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.17 -2.16 5.65 30.60 0.17 -1.99 16 3 C -0.09 -1.23 4.21 30.59 0.13 -1.11 16 4 C -0.60 -9.17 2.75 29.85 0.08 -9.08 16 5 H 0.20 1.47 8.11 -2.39 -0.02 1.45 16 6 C 0.53 12.40 6.58 87.66 0.58 12.98 16 7 O -0.55 -16.30 15.23 -3.03 -0.05 -16.35 16 8 N -0.69 -17.08 3.64 -434.80 -1.58 -18.66 16 9 C 0.14 4.95 3.07 46.63 0.14 5.09 16 10 H 0.06 2.49 7.70 -2.39 -0.02 2.47 16 11 C -0.13 -4.72 6.21 32.21 0.20 -4.52 16 12 C 0.14 6.03 4.72 46.23 0.22 6.24 16 13 H 0.12 6.21 5.52 -2.39 -0.01 6.19 16 14 C -0.13 -4.53 6.44 32.21 0.21 -4.32 16 15 C -0.12 -3.89 6.33 32.21 0.20 -3.68 16 16 C 0.12 4.81 5.35 46.25 0.25 5.06 16 17 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 18 N -0.62 -30.39 2.98 -615.24 -1.84 -32.22 16 19 C -0.23 -12.52 10.59 84.03 0.89 -11.63 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 22 N -0.94 -54.39 10.47 21.65 0.23 -54.16 16 23 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 S 2.64 48.11 5.46 -56.49 -0.31 47.81 16 28 N -1.24 -19.42 9.13 37.02 0.34 -19.08 16 29 O -0.96 -19.83 14.89 -127.65 -1.90 -21.73 16 30 O -0.99 -25.29 18.01 -127.65 -2.30 -27.59 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.10 1.48 4.90 -2.39 -0.01 1.47 16 36 H 0.09 1.18 6.96 -2.39 -0.02 1.16 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.30 16 38 H 0.42 7.63 8.00 -92.71 -0.74 6.89 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 2.69 7.35 -2.39 -0.02 2.67 16 41 H 0.09 2.35 7.82 -2.38 -0.02 2.33 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 2.20 6.48 -2.39 -0.02 2.18 16 44 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 46 H 0.42 6.36 6.95 -96.75 -0.67 5.69 16 47 H 0.43 5.23 8.96 -96.74 -0.87 4.37 16 Total: -1.00 -74.41 376.16 -2.39 -76.80 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -1.26 Total: 28.60 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.25 Total: -11.06 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -2.86 Total: -124.12 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -4.25 Total: -65.66 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 48.11 SS G_CDS: -0.31 Total: 47.81 kcal Total: -74.41 -2.39 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109560804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.505 kcal (2) G-P(sol) polarization free energy of solvation -74.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds